Wall clock time and date at job start Tue Mar 31 2020 05:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38263 * 119.98974 * 2 1 4 4 C 1.38222 * 120.02598 * 180.02562 * 3 2 1 5 5 C 1.38236 * 120.01621 * 0.23040 * 4 3 2 6 6 C 1.38340 * 119.98182 * 359.47230 * 5 4 3 7 7 Cl 1.73597 * 120.01252 * 180.27715 * 6 5 4 8 8 C 1.38192 * 119.99597 * 179.97438 * 2 1 3 9 9 C 1.50694 * 120.00597 * 359.97438 * 8 2 1 10 10 N 1.46498 * 109.47100 * 90.00425 * 9 8 2 11 11 C 1.36946 * 119.99930 * 269.99817 * 10 9 8 12 12 H 1.07999 * 119.99268 * 14.22554 * 11 10 9 13 13 C 1.38808 * 120.00347 * 194.22465 * 11 10 9 14 14 N 1.31616 * 119.99568 * 23.85335 * 13 11 10 15 15 Si 1.86798 * 120.00179 * 203.85332 * 13 11 10 16 16 H 1.48499 * 109.46951 * 359.97438 * 15 13 11 17 17 H 1.48493 * 109.47240 * 119.99875 * 15 13 11 18 18 H 1.48497 * 109.46818 * 240.00073 * 15 13 11 19 19 C 1.46502 * 120.00455 * 89.99720 * 10 9 8 20 20 C 1.50698 * 109.46888 * 84.01125 * 19 10 9 21 21 O 1.20823 * 120.00145 * 0.02562 * 20 19 10 22 22 O 1.34232 * 119.99949 * 180.02562 * 20 19 10 23 23 H 1.09005 * 109.46599 * 90.00386 * 1 2 3 24 24 H 1.09001 * 109.46839 * 209.99561 * 1 2 3 25 25 H 1.08998 * 109.47685 * 330.00297 * 1 2 3 26 26 H 1.08003 * 119.98867 * 359.97438 * 3 2 1 27 27 H 1.08006 * 119.99388 * 179.97438 * 4 3 2 28 28 H 1.07998 * 120.01471 * 179.74843 * 5 4 3 29 29 H 1.09006 * 109.47344 * 209.99751 * 9 8 2 30 30 H 1.09000 * 109.47473 * 330.00035 * 9 8 2 31 31 H 0.97006 * 119.99646 * 180.02562 * 14 13 11 32 32 H 1.09006 * 109.47074 * 204.01079 * 19 10 9 33 33 H 1.08997 * 109.46975 * 324.00982 * 19 10 9 34 34 H 0.96700 * 117.00423 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1975 0.0000 4 6 3.5803 1.1984 -0.0005 5 6 4.2726 0.0019 -0.0059 6 6 3.5816 -1.1966 0.0003 7 17 4.4502 -2.6996 0.0009 8 6 2.1979 -1.1968 0.0005 9 6 1.4444 -2.5019 0.0017 10 7 1.1998 -2.9258 -1.3791 11 6 0.0584 -2.5310 -2.0246 12 1 -0.5448 -1.7339 -1.6157 13 6 -0.3233 -3.1552 -3.2042 14 7 0.0904 -4.3770 -3.4658 15 14 -1.4240 -2.2614 -4.4202 16 1 -1.7480 -0.9108 -3.8945 17 1 -0.7206 -2.1309 -5.7214 18 1 -2.6790 -3.0320 -4.6109 19 6 2.1763 -3.7720 -2.0696 20 6 1.9308 -5.2155 -1.7132 21 8 1.0322 -5.5075 -0.9602 22 8 2.7106 -6.1769 -2.2324 23 1 -0.3633 -0.0001 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3634 0.8900 0.5138 26 1 1.6577 2.1326 -0.0004 27 1 4.1196 2.1341 -0.0010 28 1 5.3525 0.0026 -0.0104 29 1 2.0338 -3.2613 0.5158 30 1 0.4922 -2.3713 0.5158 31 1 -0.1760 -4.8131 -4.2903 32 1 2.0732 -3.6411 -3.1468 33 1 3.1833 -3.4884 -1.7638 34 1 2.5144 -7.0881 -1.9749 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610522580.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:29 Heat of formation + Delta-G solvation = -47.322577 kcal Electronic energy + Delta-G solvation = -20783.726579 eV Core-core repulsion = 17515.331622 eV Total energy + Delta-G solvation = -3268.394957 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.39041 -38.58639 -36.14329 -35.74773 -34.40632 -32.66471 -31.70105 -30.21793 -27.41589 -26.98413 -25.38612 -22.72056 -21.58662 -20.66573 -19.71574 -16.91074 -16.65307 -16.32717 -15.46339 -15.34982 -15.17675 -14.71791 -14.11252 -13.87024 -13.33494 -13.27947 -12.93665 -12.74637 -12.40988 -12.18636 -11.78951 -11.69787 -11.24553 -11.13529 -10.95922 -10.87894 -10.62454 -10.44455 -10.28993 -10.13752 -9.91289 -9.73407 -9.17972 -8.55069 -8.28711 -8.26910 -7.08369 -5.92440 -3.23155 1.50803 1.63176 2.52208 3.34063 3.41782 3.43824 3.90702 3.94222 4.39137 4.57155 5.07122 5.10229 5.22717 5.37495 5.46466 5.53852 5.62119 5.80778 5.98421 6.11501 6.19485 6.26750 6.47803 6.51030 6.56599 6.67148 6.70746 6.98708 7.01468 7.08164 7.19339 7.70898 7.87919 8.16278 9.00777 9.45265 9.70827 10.13527 11.18450 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.014484 B = 0.008862 C = 0.006161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.725551 B = 3158.689132 C = 4543.870010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.053 4.053 3 C -0.122 4.122 4 C -0.119 4.119 5 C -0.123 4.123 6 C -0.026 4.026 7 Cl -0.073 7.073 8 C -0.073 4.073 9 C 0.173 3.827 10 N -0.554 5.554 11 C -0.257 4.257 12 H 0.089 0.911 13 C 0.000 4.000 14 N -0.901 5.901 15 Si 0.903 3.097 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.292 1.292 19 C 0.180 3.820 20 C 0.479 3.521 21 O -0.519 6.519 22 O -0.544 6.544 23 H 0.085 0.915 24 H 0.075 0.925 25 H 0.056 0.944 26 H 0.121 0.879 27 H 0.123 0.877 28 H 0.124 0.876 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.256 0.744 32 H 0.112 0.888 33 H 0.063 0.937 34 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.326 7.733 6.081 12.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.054 4.054 3 C -0.141 4.141 4 C -0.138 4.138 5 C -0.142 4.142 6 C -0.053 4.053 7 Cl -0.045 7.045 8 C -0.076 4.076 9 C 0.046 3.954 10 N -0.273 5.273 11 C -0.386 4.386 12 H 0.106 0.894 13 C -0.198 4.198 14 N -0.546 5.546 15 Si 0.733 3.267 16 H -0.202 1.202 17 H -0.215 1.215 18 H -0.219 1.219 19 C 0.051 3.949 20 C 0.319 3.681 21 O -0.405 6.405 22 O -0.354 6.354 23 H 0.104 0.896 24 H 0.093 0.907 25 H 0.075 0.925 26 H 0.139 0.861 27 H 0.141 0.859 28 H 0.142 0.858 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.066 0.934 32 H 0.130 0.870 33 H 0.080 0.920 34 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 7.150 7.826 6.036 12.198 hybrid contribution -0.692 -0.538 -0.711 1.129 sum 6.458 7.288 5.325 11.098 Atomic orbital electron populations 1.20997 0.90723 1.02100 1.03581 1.19708 0.96467 0.91625 0.97604 1.21064 0.94147 0.97576 1.01273 1.20898 0.94224 0.97074 1.01577 1.20891 0.99777 0.90956 1.02579 1.20787 0.92137 0.86645 1.05772 1.98338 1.76289 1.33212 1.96612 1.20772 0.91770 0.98447 0.96643 1.19876 0.97876 0.89795 0.87817 1.43849 1.20922 1.53665 1.08819 1.19514 1.01818 1.13459 1.03789 0.89383 1.24808 0.99523 0.95176 1.00255 1.69946 1.49081 1.10218 1.25328 0.86207 0.79638 0.79310 0.81547 1.20189 1.21499 1.21928 1.20503 0.91557 0.82320 1.00521 1.25366 0.77873 0.89402 0.75479 1.90496 1.30516 1.83271 1.36200 1.84645 1.60062 1.19370 1.71318 0.89625 0.90656 0.92543 0.86149 0.85948 0.85775 0.92638 0.91372 0.93367 0.87036 0.91974 0.76517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.81 8.40 36.00 0.30 -1.50 16 2 C -0.05 -0.86 5.88 -104.63 -0.62 -1.48 16 3 C -0.12 -1.70 9.70 -39.58 -0.38 -2.08 16 4 C -0.12 -1.54 10.05 -39.59 -0.40 -1.94 16 5 C -0.12 -1.75 9.83 -39.54 -0.39 -2.14 16 6 C -0.03 -0.44 6.32 -39.49 -0.25 -0.69 16 7 Cl -0.07 -1.21 24.63 -51.86 -1.28 -2.48 16 8 C -0.07 -1.31 5.47 -104.59 -0.57 -1.88 16 9 C 0.17 3.57 4.98 -5.20 -0.03 3.55 16 10 N -0.55 -13.26 2.02 -175.98 -0.35 -13.62 16 11 C -0.26 -6.61 9.53 -15.06 -0.14 -6.76 16 12 H 0.09 2.14 5.07 -52.49 -0.27 1.87 16 13 C 0.00 0.01 4.84 -17.43 -0.08 -0.08 16 14 N -0.90 -25.45 9.42 55.49 0.52 -24.92 16 15 Si 0.90 21.17 29.62 -169.99 -5.03 16.13 16 16 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 17 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 18 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 19 C 0.18 4.29 5.49 -5.19 -0.03 4.27 16 20 C 0.48 11.78 6.60 36.00 0.24 12.02 16 21 O -0.52 -14.35 16.98 -18.75 -0.32 -14.67 16 22 O -0.54 -11.47 13.42 -39.26 -0.53 -12.00 16 23 H 0.09 1.45 6.66 -51.93 -0.35 1.10 16 24 H 0.07 1.21 5.91 -51.93 -0.31 0.90 16 25 H 0.06 0.70 8.09 -51.93 -0.42 0.28 16 26 H 0.12 1.37 8.06 -52.48 -0.42 0.94 16 27 H 0.12 1.22 8.06 -52.48 -0.42 0.79 16 28 H 0.12 1.49 8.06 -52.49 -0.42 1.06 16 29 H 0.06 1.16 6.83 -51.93 -0.35 0.80 16 30 H 0.07 1.40 5.84 -51.93 -0.30 1.09 16 31 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 32 H 0.11 2.91 6.26 -51.93 -0.32 2.58 16 33 H 0.06 1.34 5.14 -51.93 -0.27 1.07 16 34 H 0.38 6.39 9.10 45.56 0.41 6.80 16 LS Contribution 295.88 15.07 4.46 4.46 Total: -1.00 -31.19 295.88 -7.46 -38.64 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -2.58 Total: 7.17 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: -2.35 Total: 1.29 kcal Atomic # 7 Polarization: -38.71 SS G_CDS: 0.17 Total: -38.54 kcal Atomic # 8 Polarization: -25.82 SS G_CDS: -0.85 Total: -26.67 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.03 Total: 16.13 kcal Atomic # 17 Polarization: -1.21 SS G_CDS: -1.28 Total: -2.48 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -31.19 -7.46 -38.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610522580.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.678 kcal (2) G-P(sol) polarization free energy of solvation -31.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds