Wall clock time and date at job start Tue Mar 31 2020 05:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38263 * 119.98974 * 2 1 4 4 C 1.38222 * 120.02598 * 180.02562 * 3 2 1 5 5 C 1.38236 * 120.01621 * 0.23040 * 4 3 2 6 6 C 1.38340 * 119.98182 * 359.47230 * 5 4 3 7 7 Cl 1.73597 * 120.01252 * 180.27715 * 6 5 4 8 8 C 1.38192 * 119.99597 * 179.97438 * 2 1 3 9 9 C 1.50694 * 120.00597 * 359.97438 * 8 2 1 10 10 N 1.46498 * 109.47100 * 90.00425 * 9 8 2 11 11 C 1.36946 * 119.99930 * 269.99817 * 10 9 8 12 12 H 1.07999 * 119.99268 * 14.22554 * 11 10 9 13 13 C 1.38808 * 120.00347 * 194.22465 * 11 10 9 14 14 N 1.31616 * 119.99568 * 23.85335 * 13 11 10 15 15 Si 1.86798 * 120.00179 * 203.85332 * 13 11 10 16 16 H 1.48499 * 109.46951 * 359.97438 * 15 13 11 17 17 H 1.48493 * 109.47240 * 119.99875 * 15 13 11 18 18 H 1.48497 * 109.46818 * 240.00073 * 15 13 11 19 19 C 1.46502 * 120.00455 * 89.99720 * 10 9 8 20 20 C 1.50698 * 109.46888 * 84.01125 * 19 10 9 21 21 O 1.20823 * 120.00145 * 0.02562 * 20 19 10 22 22 O 1.34232 * 119.99949 * 180.02562 * 20 19 10 23 23 H 1.09005 * 109.46599 * 90.00386 * 1 2 3 24 24 H 1.09001 * 109.46839 * 209.99561 * 1 2 3 25 25 H 1.08998 * 109.47685 * 330.00297 * 1 2 3 26 26 H 1.08003 * 119.98867 * 359.97438 * 3 2 1 27 27 H 1.08006 * 119.99388 * 179.97438 * 4 3 2 28 28 H 1.07998 * 120.01471 * 179.74843 * 5 4 3 29 29 H 1.09006 * 109.47344 * 209.99751 * 9 8 2 30 30 H 1.09000 * 109.47473 * 330.00035 * 9 8 2 31 31 H 0.97006 * 119.99646 * 180.02562 * 14 13 11 32 32 H 1.09006 * 109.47074 * 204.01079 * 19 10 9 33 33 H 1.08997 * 109.46975 * 324.00982 * 19 10 9 34 34 H 0.96700 * 117.00423 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1975 0.0000 4 6 3.5803 1.1984 -0.0005 5 6 4.2726 0.0019 -0.0059 6 6 3.5816 -1.1966 0.0003 7 17 4.4502 -2.6996 0.0009 8 6 2.1979 -1.1968 0.0005 9 6 1.4444 -2.5019 0.0017 10 7 1.1998 -2.9258 -1.3791 11 6 0.0584 -2.5310 -2.0246 12 1 -0.5448 -1.7339 -1.6157 13 6 -0.3233 -3.1552 -3.2042 14 7 0.0904 -4.3770 -3.4658 15 14 -1.4240 -2.2614 -4.4202 16 1 -1.7480 -0.9108 -3.8945 17 1 -0.7206 -2.1309 -5.7214 18 1 -2.6790 -3.0320 -4.6109 19 6 2.1763 -3.7720 -2.0696 20 6 1.9308 -5.2155 -1.7132 21 8 1.0322 -5.5075 -0.9602 22 8 2.7106 -6.1769 -2.2324 23 1 -0.3633 -0.0001 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3634 0.8900 0.5138 26 1 1.6577 2.1326 -0.0004 27 1 4.1196 2.1341 -0.0010 28 1 5.3525 0.0026 -0.0104 29 1 2.0338 -3.2613 0.5158 30 1 0.4922 -2.3713 0.5158 31 1 -0.1760 -4.8131 -4.2903 32 1 2.0732 -3.6411 -3.1468 33 1 3.1833 -3.4884 -1.7638 34 1 2.5144 -7.0881 -1.9749 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610522580.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:28 Heat of formation + Delta-G solvation = -65.587448 kcal Electronic energy + Delta-G solvation = -20784.518603 eV Core-core repulsion = 17515.331622 eV Total energy + Delta-G solvation = -3269.186981 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.79936 -40.31856 -37.49123 -37.39115 -36.30823 -34.12516 -33.19430 -31.74646 -29.23433 -28.30071 -26.93489 -24.45097 -22.82635 -22.26465 -21.29087 -18.80036 -18.53856 -17.59606 -17.17872 -16.87895 -16.73623 -16.04488 -15.98007 -15.54279 -15.15163 -14.55816 -14.27936 -14.08021 -13.78922 -13.53443 -13.40141 -13.34074 -12.93281 -12.80525 -12.48430 -12.25925 -12.09886 -12.08276 -11.92565 -11.83839 -11.66327 -11.41710 -11.09543 -10.52639 -9.55421 -9.42993 -8.98145 -7.92484 -5.23627 0.34541 0.46273 1.28854 1.47408 1.50500 1.59586 1.97450 2.47531 2.73679 2.82903 3.28772 3.67481 3.92272 4.01762 4.17311 4.27762 4.46020 4.65486 4.69428 4.75205 4.81220 4.97105 4.99645 5.07213 5.13183 5.19938 5.37891 5.43954 5.54135 5.72788 5.79240 6.06352 6.09074 6.21957 7.03286 7.57051 7.79599 8.19592 9.17213 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.014484 B = 0.008862 C = 0.006161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.725551 B = 3158.689132 C = 4543.870010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.069 4.069 3 C -0.118 4.118 4 C -0.106 4.106 5 C -0.123 4.123 6 C -0.042 4.042 7 Cl -0.082 7.082 8 C -0.098 4.098 9 C 0.178 3.822 10 N -0.566 5.566 11 C -0.252 4.252 12 H 0.099 0.901 13 C -0.056 4.056 14 N -0.933 5.933 15 Si 0.963 3.037 16 H -0.259 1.259 17 H -0.293 1.293 18 H -0.304 1.304 19 C 0.184 3.816 20 C 0.482 3.518 21 O -0.556 6.556 22 O -0.535 6.535 23 H 0.067 0.933 24 H 0.058 0.942 25 H 0.088 0.912 26 H 0.152 0.848 27 H 0.163 0.837 28 H 0.148 0.852 29 H 0.045 0.955 30 H 0.061 0.939 31 H 0.247 0.753 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.260 10.482 6.486 14.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.070 4.070 3 C -0.136 4.136 4 C -0.124 4.124 5 C -0.142 4.142 6 C -0.069 4.069 7 Cl -0.053 7.053 8 C -0.101 4.101 9 C 0.053 3.947 10 N -0.285 5.285 11 C -0.381 4.381 12 H 0.117 0.883 13 C -0.250 4.250 14 N -0.581 5.581 15 Si 0.792 3.208 16 H -0.183 1.183 17 H -0.220 1.220 18 H -0.232 1.232 19 C 0.054 3.946 20 C 0.324 3.676 21 O -0.445 6.445 22 O -0.347 6.347 23 H 0.085 0.915 24 H 0.077 0.923 25 H 0.107 0.893 26 H 0.169 0.831 27 H 0.180 0.820 28 H 0.165 0.835 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.056 0.944 32 H 0.106 0.894 33 H 0.101 0.899 34 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 8.110 10.594 6.465 14.825 hybrid contribution -0.895 -1.359 -0.743 1.789 sum 7.215 9.235 5.722 13.041 Atomic orbital electron populations 1.20928 0.90579 1.02934 1.02536 1.19907 0.96859 0.92056 0.98171 1.21428 0.94832 0.97681 0.99678 1.21392 0.94057 0.98110 0.98890 1.21241 1.01091 0.90363 1.01482 1.20986 0.91818 0.87312 1.06799 1.98328 1.76230 1.34063 1.96665 1.20468 0.92360 0.97481 0.99784 1.19826 0.97807 0.91140 0.85952 1.44035 1.20473 1.53861 1.10089 1.19932 1.01850 1.12809 1.03533 0.88347 1.25514 1.01678 0.95813 1.01988 1.70088 1.51163 1.11564 1.25268 0.85264 0.77385 0.78840 0.79320 1.18334 1.21965 1.23182 1.20451 0.92702 0.82231 0.99178 1.25512 0.77278 0.90231 0.74628 1.90471 1.32132 1.83973 1.37961 1.84569 1.59031 1.20513 1.70568 0.91458 0.92272 0.89322 0.83060 0.81959 0.83465 0.93656 0.92100 0.94356 0.89371 0.89870 0.74154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.32 8.40 71.24 0.60 -2.72 16 2 C -0.07 -2.11 5.88 -19.87 -0.12 -2.23 16 3 C -0.12 -2.80 9.70 22.27 0.22 -2.58 16 4 C -0.11 -2.26 10.05 22.27 0.22 -2.03 16 5 C -0.12 -3.09 9.83 22.29 0.22 -2.87 16 6 C -0.04 -1.34 6.32 22.33 0.14 -1.20 16 7 Cl -0.08 -2.64 24.63 -2.72 -0.07 -2.70 16 8 C -0.10 -3.45 5.47 -19.84 -0.11 -3.56 16 9 C 0.18 7.47 4.98 85.63 0.43 7.90 16 10 N -0.57 -27.50 2.02 -710.69 -1.43 -28.94 16 11 C -0.25 -13.09 9.53 84.03 0.80 -12.29 16 12 H 0.10 4.79 5.07 -2.91 -0.01 4.77 16 13 C -0.06 -3.02 4.84 84.86 0.41 -2.61 16 14 N -0.93 -54.07 9.42 21.65 0.20 -53.86 16 15 Si 0.96 44.08 29.62 68.60 2.03 46.11 16 16 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 17 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 18 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 19 C 0.18 8.92 5.49 85.63 0.47 9.39 16 20 C 0.48 24.12 6.60 71.24 0.47 24.59 16 21 O -0.56 -31.50 16.98 21.97 0.37 -31.13 16 22 O -0.54 -22.57 13.42 -51.44 -0.69 -23.26 16 23 H 0.07 2.20 6.66 -2.38 -0.02 2.19 16 24 H 0.06 1.89 5.91 -2.39 -0.01 1.87 16 25 H 0.09 1.95 8.09 -2.39 -0.02 1.93 16 26 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 27 H 0.16 2.19 8.06 -2.91 -0.02 2.17 16 28 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 29 H 0.05 1.94 6.83 -2.38 -0.02 1.93 16 30 H 0.06 2.57 5.84 -2.39 -0.01 2.56 16 31 H 0.25 14.14 8.31 -92.70 -0.77 13.37 16 32 H 0.09 4.72 6.26 -2.38 -0.01 4.71 16 33 H 0.08 3.62 5.14 -2.39 -0.01 3.60 16 34 H 0.40 13.28 9.10 -74.06 -0.67 12.61 16 Total: -1.00 -68.08 295.88 4.65 -63.42 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: 0.48 Total: 20.56 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: 3.75 Total: 9.79 kcal Atomic # 7 Polarization: -81.57 SS G_CDS: -1.23 Total: -82.80 kcal Atomic # 8 Polarization: -54.07 SS G_CDS: -0.32 Total: -54.38 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Atomic # 17 Polarization: -2.64 SS G_CDS: -0.07 Total: -2.70 kcal Total: -68.08 4.65 -63.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610522580.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.163 kcal (2) G-P(sol) polarization free energy of solvation -68.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds