Wall clock time and date at job start Tue Mar 31 2020 05:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35928 * 116.99822 * 2 1 4 4 C 1.38742 * 120.03887 * 359.72505 * 3 2 1 5 5 C 1.38127 * 119.94938 * 179.76536 * 4 3 2 6 6 C 1.38382 * 120.04682 * 0.51283 * 5 4 3 7 7 Cl 1.73601 * 119.95948 * 179.76252 * 6 5 4 8 8 C 1.38349 * 120.08305 * 359.74225 * 6 5 4 9 9 C 1.38160 * 120.04293 * 0.02562 * 8 6 5 10 10 C 1.50697 * 120.02101 * 179.97438 * 9 8 6 11 11 C 1.52996 * 109.47399 * 265.01859 * 10 9 8 12 12 N 1.46499 * 109.47548 * 179.97438 * 11 10 9 13 13 C 1.34770 * 120.00064 * 179.97438 * 12 11 10 14 14 O 1.21688 * 120.00248 * 0.02562 * 13 12 11 15 15 C 1.46377 * 120.00032 * 180.02562 * 13 12 11 16 16 H 1.08004 * 119.99785 * 359.97438 * 15 13 12 17 17 C 1.40048 * 120.00462 * 180.02562 * 15 13 12 18 18 N 1.30676 * 119.99542 * 359.97438 * 17 15 13 19 19 Si 1.86799 * 120.00516 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.46945 * 89.99460 * 19 17 15 21 21 H 1.48496 * 109.47175 * 209.99930 * 19 17 15 22 22 H 1.48501 * 109.46748 * 329.99906 * 19 17 15 23 23 H 1.09001 * 109.47103 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47054 * 299.99733 * 1 2 3 25 25 H 1.09000 * 109.47187 * 59.99789 * 1 2 3 26 26 H 1.07991 * 120.02758 * 0.02562 * 4 3 2 27 27 H 1.08005 * 119.97727 * 180.22934 * 5 4 3 28 28 H 1.07998 * 119.97861 * 180.02562 * 8 6 5 29 29 H 1.09000 * 109.47579 * 25.02658 * 10 9 8 30 30 H 1.09007 * 109.47100 * 145.02180 * 10 9 8 31 31 H 1.09002 * 109.47561 * 300.00380 * 11 10 9 32 32 H 1.09007 * 109.46733 * 60.00096 * 11 10 9 33 33 H 0.97002 * 119.99708 * 0.02562 * 12 11 10 34 34 H 0.96995 * 119.99867 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2912 2.3752 -0.0058 5 6 1.9202 3.6050 -0.0009 6 6 3.3021 3.6764 -0.0009 7 17 4.0903 5.2233 -0.0010 8 6 4.0565 2.5167 -0.0005 9 6 3.4312 1.2848 -0.0006 10 6 4.2534 0.0218 -0.0007 11 6 4.4266 -0.4738 -1.4377 12 7 5.2264 -1.7012 -1.4380 13 6 5.5087 -2.3214 -2.6007 14 8 5.0997 -1.8616 -3.6505 15 6 6.3074 -3.5480 -2.6009 16 1 6.6708 -3.9559 -1.6692 17 6 6.6013 -4.1922 -3.8092 18 7 6.1620 -3.6984 -4.9365 19 14 7.6211 -5.7573 -3.8095 20 1 6.7228 -6.9334 -3.6877 21 1 8.3871 -5.8487 -5.0784 22 1 8.5641 -5.7337 -2.6626 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 0.2128 2.3199 -0.0098 27 1 1.3330 4.5114 -0.0016 28 1 5.1350 2.5745 -0.0001 29 1 5.2320 0.2253 0.4340 30 1 3.7459 -0.7421 0.5884 31 1 3.4480 -0.6774 -1.8724 32 1 4.9340 0.2902 -2.0269 33 1 5.5522 -2.0680 -0.6011 34 1 6.3652 -4.1448 -5.7734 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000011891908.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:55 Heat of formation + Delta-G solvation = -68.647094 kcal Electronic energy + Delta-G solvation = -19166.948408 eV Core-core repulsion = 15897.628750 eV Total energy + Delta-G solvation = -3269.319657 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.44574 -37.82887 -37.26066 -36.32491 -34.38492 -32.50620 -31.75090 -30.12959 -28.42217 -27.32376 -26.02134 -23.21440 -22.35068 -21.09553 -19.61345 -18.17028 -17.11999 -16.66575 -16.20058 -15.86287 -15.24781 -14.73778 -14.42241 -14.37802 -13.96248 -13.81312 -13.43847 -13.09401 -12.44614 -12.38501 -12.20046 -12.02371 -11.84704 -11.37562 -11.31227 -11.10818 -11.03177 -10.77496 -10.75814 -10.50716 -10.39626 -10.18157 -9.05895 -8.80660 -8.17143 -7.55152 -7.42242 -6.13519 -4.58830 1.07737 1.10234 2.06624 3.15342 3.17155 3.23643 3.27273 3.45226 4.14436 4.48099 4.58107 4.64747 4.82131 4.94919 5.00598 5.04624 5.27197 5.34964 5.38517 5.43172 5.64206 5.74132 5.84033 5.93099 6.03834 6.07154 6.16542 6.46436 6.67954 6.71896 7.21486 7.48000 7.99629 8.16745 8.38568 9.07345 9.60965 10.65864 10.84975 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.022359 B = 0.003510 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.990701 B = 7975.848129 C = 8766.522624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.303 6.303 3 C 0.139 3.861 4 C -0.198 4.198 5 C -0.077 4.077 6 C -0.070 4.070 7 Cl -0.077 7.077 8 C -0.068 4.068 9 C -0.089 4.089 10 C -0.083 4.083 11 C 0.142 3.858 12 N -0.768 5.768 13 C 0.554 3.446 14 O -0.581 6.581 15 C -0.546 4.546 16 H 0.067 0.933 17 C 0.087 3.913 18 N -0.769 5.769 19 Si 0.908 3.092 20 H -0.272 1.272 21 H -0.280 1.280 22 H -0.265 1.265 23 H 0.102 0.898 24 H 0.054 0.946 25 H 0.057 0.943 26 H 0.136 0.864 27 H 0.133 0.867 28 H 0.141 0.859 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.050 0.950 32 H 0.046 0.954 33 H 0.380 0.620 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.596 12.293 13.082 20.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.215 6.215 3 C 0.093 3.907 4 C -0.217 4.217 5 C -0.096 4.096 6 C -0.097 4.097 7 Cl -0.048 7.048 8 C -0.086 4.086 9 C -0.091 4.091 10 C -0.120 4.120 11 C 0.017 3.983 12 N -0.423 5.423 13 C 0.358 3.642 14 O -0.464 6.464 15 C -0.583 4.583 16 H 0.086 0.914 17 C -0.132 4.132 18 N -0.398 5.398 19 Si 0.732 3.268 20 H -0.198 1.198 21 H -0.205 1.205 22 H -0.189 1.189 23 H 0.120 0.880 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.154 0.846 27 H 0.151 0.849 28 H 0.159 0.841 29 H 0.094 0.906 30 H 0.100 0.900 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.211 0.789 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.770 12.566 12.078 19.981 hybrid contribution 0.370 -0.556 0.372 0.764 sum -9.400 12.010 12.450 19.688 Atomic orbital electron populations 1.23109 0.78352 1.04333 1.01146 1.86191 1.21299 1.26115 1.87931 1.18945 0.91850 0.84550 0.95374 1.21142 1.00263 0.91525 1.08753 1.20749 0.92330 0.97925 0.98585 1.20716 0.92780 0.86564 1.09653 1.98355 1.80762 1.28440 1.97238 1.20836 1.00520 0.89420 0.97846 1.19148 0.90601 0.95492 1.03829 1.20690 0.98853 0.93560 0.98947 1.20769 0.96008 0.88448 0.93049 1.46116 1.58937 1.27286 1.10009 1.18214 0.80285 0.84385 0.81300 1.90597 1.56820 1.68025 1.30988 1.20895 1.34952 1.08779 0.93684 0.91444 1.25711 0.94653 0.97819 0.95043 1.70031 1.35645 1.35989 0.98137 0.86381 0.80105 0.82031 0.78263 1.19790 1.20503 1.18925 0.87954 0.92748 0.92484 0.84631 0.84928 0.84121 0.90578 0.90017 0.93178 0.93532 0.78916 0.92182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.22 16 2 O -0.30 -4.01 9.63 -19.51 -0.19 -4.20 16 3 C 0.14 1.82 6.66 -39.22 -0.26 1.56 16 4 C -0.20 -2.13 9.04 -39.44 -0.36 -2.49 16 5 C -0.08 -0.82 9.82 -39.57 -0.39 -1.21 16 6 C -0.07 -0.83 6.32 -39.49 -0.25 -1.08 16 7 Cl -0.08 -0.84 28.95 -51.86 -1.50 -2.35 16 8 C -0.07 -0.86 9.46 -39.57 -0.37 -1.23 16 9 C -0.09 -1.23 5.15 -104.48 -0.54 -1.77 16 10 C -0.08 -1.23 5.18 -27.89 -0.14 -1.38 16 11 C 0.14 2.86 5.66 -4.04 -0.02 2.84 16 12 N -0.77 -17.67 5.55 -61.72 -0.34 -18.01 16 13 C 0.55 16.24 7.75 -12.99 -0.10 16.13 16 14 O -0.58 -19.44 15.02 5.20 0.08 -19.36 16 15 C -0.55 -15.72 9.54 -35.63 -0.34 -16.06 16 16 H 0.07 1.77 7.85 -52.48 -0.41 1.36 16 17 C 0.09 2.48 5.50 -17.36 -0.10 2.38 16 18 N -0.77 -23.51 11.83 55.55 0.66 -22.86 16 19 Si 0.91 20.38 29.56 -169.99 -5.02 15.36 16 20 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 21 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 22 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 23 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 24 H 0.05 0.37 7.67 -51.93 -0.40 -0.03 16 25 H 0.06 0.45 7.65 -51.93 -0.40 0.05 16 26 H 0.14 1.10 6.30 -52.49 -0.33 0.77 16 27 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 28 H 0.14 1.63 8.06 -52.49 -0.42 1.21 16 29 H 0.08 1.01 8.05 -51.93 -0.42 0.59 16 30 H 0.08 1.19 7.69 -51.93 -0.40 0.79 16 31 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.38 7.55 8.45 -40.82 -0.35 7.21 16 34 H 0.27 7.40 8.29 -40.82 -0.34 7.06 16 LS Contribution 314.24 15.07 4.74 4.74 Total: -1.00 -35.71 314.24 -7.41 -43.13 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -3.95 Total: 4.63 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: -1.88 Total: -1.08 kcal Atomic # 7 Polarization: -41.18 SS G_CDS: 0.31 Total: -40.87 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: -0.11 Total: -23.56 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -1.50 Total: -2.35 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -35.71 -7.41 -43.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000011891908.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.518 kcal (2) G-P(sol) polarization free energy of solvation -35.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds