Wall clock time and date at job start Tue Mar 31 2020 05:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35928 * 116.99822 * 2 1 4 4 C 1.38742 * 120.03887 * 359.72505 * 3 2 1 5 5 C 1.38127 * 119.94938 * 179.76536 * 4 3 2 6 6 C 1.38382 * 120.04682 * 0.51283 * 5 4 3 7 7 Cl 1.73601 * 119.95948 * 179.76252 * 6 5 4 8 8 C 1.38349 * 120.08305 * 359.74225 * 6 5 4 9 9 C 1.38160 * 120.04293 * 0.02562 * 8 6 5 10 10 C 1.50697 * 120.02101 * 179.97438 * 9 8 6 11 11 C 1.52996 * 109.47399 * 265.01859 * 10 9 8 12 12 N 1.46499 * 109.47548 * 179.97438 * 11 10 9 13 13 C 1.34770 * 120.00064 * 179.97438 * 12 11 10 14 14 O 1.21688 * 120.00248 * 0.02562 * 13 12 11 15 15 C 1.46377 * 120.00032 * 180.02562 * 13 12 11 16 16 H 1.08004 * 119.99785 * 359.97438 * 15 13 12 17 17 C 1.40048 * 120.00462 * 180.02562 * 15 13 12 18 18 N 1.30676 * 119.99542 * 359.97438 * 17 15 13 19 19 Si 1.86799 * 120.00516 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.46945 * 89.99460 * 19 17 15 21 21 H 1.48496 * 109.47175 * 209.99930 * 19 17 15 22 22 H 1.48501 * 109.46748 * 329.99906 * 19 17 15 23 23 H 1.09001 * 109.47103 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47054 * 299.99733 * 1 2 3 25 25 H 1.09000 * 109.47187 * 59.99789 * 1 2 3 26 26 H 1.07991 * 120.02758 * 0.02562 * 4 3 2 27 27 H 1.08005 * 119.97727 * 180.22934 * 5 4 3 28 28 H 1.07998 * 119.97861 * 180.02562 * 8 6 5 29 29 H 1.09000 * 109.47579 * 25.02658 * 10 9 8 30 30 H 1.09007 * 109.47100 * 145.02180 * 10 9 8 31 31 H 1.09002 * 109.47561 * 300.00380 * 11 10 9 32 32 H 1.09007 * 109.46733 * 60.00096 * 11 10 9 33 33 H 0.97002 * 119.99708 * 0.02562 * 12 11 10 34 34 H 0.96995 * 119.99867 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2912 2.3752 -0.0058 5 6 1.9202 3.6050 -0.0009 6 6 3.3021 3.6764 -0.0009 7 17 4.0903 5.2233 -0.0010 8 6 4.0565 2.5167 -0.0005 9 6 3.4312 1.2848 -0.0006 10 6 4.2534 0.0218 -0.0007 11 6 4.4266 -0.4738 -1.4377 12 7 5.2264 -1.7012 -1.4380 13 6 5.5087 -2.3214 -2.6007 14 8 5.0997 -1.8616 -3.6505 15 6 6.3074 -3.5480 -2.6009 16 1 6.6708 -3.9559 -1.6692 17 6 6.6013 -4.1922 -3.8092 18 7 6.1620 -3.6984 -4.9365 19 14 7.6211 -5.7573 -3.8095 20 1 6.7228 -6.9334 -3.6877 21 1 8.3871 -5.8487 -5.0784 22 1 8.5641 -5.7337 -2.6626 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 0.2128 2.3199 -0.0098 27 1 1.3330 4.5114 -0.0016 28 1 5.1350 2.5745 -0.0001 29 1 5.2320 0.2253 0.4340 30 1 3.7459 -0.7421 0.5884 31 1 3.4480 -0.6774 -1.8724 32 1 4.9340 0.2902 -2.0269 33 1 5.5522 -2.0680 -0.6011 34 1 6.3652 -4.1448 -5.7734 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000011891908.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:54 Heat of formation + Delta-G solvation = -93.594425 kcal Electronic energy + Delta-G solvation = -19168.030205 eV Core-core repulsion = 15897.628750 eV Total energy + Delta-G solvation = -3270.401455 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.37112 -39.39769 -38.68625 -37.27462 -35.99978 -34.58621 -33.36795 -31.05850 -29.86875 -28.27802 -27.83661 -24.64989 -23.24796 -22.24965 -21.71926 -19.31880 -18.89772 -17.62877 -17.48174 -17.09735 -16.75288 -16.18518 -15.88239 -15.80636 -15.50239 -14.90010 -14.51779 -14.25792 -14.12462 -14.01609 -13.30020 -13.10934 -13.02921 -12.92915 -12.75030 -12.64696 -12.53497 -12.22869 -12.04359 -12.00012 -11.67862 -11.61204 -10.92145 -10.03165 -9.85607 -9.48464 -9.09939 -8.28034 -6.84973 0.15204 0.18126 1.17169 1.41445 1.43462 1.58919 2.26115 2.33358 2.48199 2.51499 3.12852 3.62615 3.70751 3.73406 4.05527 4.15107 4.21277 4.24695 4.38437 4.40005 4.43447 4.64165 4.72379 4.82162 4.87346 5.04780 5.15834 5.18101 5.31441 5.33028 5.58157 5.88748 6.24352 6.27671 6.36051 6.87419 7.57156 8.50262 8.68565 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.022359 B = 0.003510 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.990701 B = 7975.848129 C = 8766.522624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.331 6.331 3 C 0.127 3.873 4 C -0.193 4.193 5 C -0.070 4.070 6 C -0.081 4.081 7 Cl -0.071 7.071 8 C -0.073 4.073 9 C -0.115 4.115 10 C -0.064 4.064 11 C 0.150 3.850 12 N -0.754 5.754 13 C 0.535 3.465 14 O -0.635 6.635 15 C -0.573 4.573 16 H 0.090 0.910 17 C 0.027 3.973 18 N -0.824 5.824 19 Si 1.001 2.999 20 H -0.261 1.261 21 H -0.273 1.273 22 H -0.247 1.247 23 H 0.110 0.890 24 H 0.078 0.922 25 H 0.064 0.936 26 H 0.165 0.835 27 H 0.160 0.840 28 H 0.145 0.855 29 H 0.093 0.907 30 H 0.085 0.915 31 H 0.024 0.976 32 H 0.027 0.973 33 H 0.397 0.603 34 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.708 12.036 14.701 21.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.244 6.244 3 C 0.080 3.920 4 C -0.212 4.212 5 C -0.089 4.089 6 C -0.108 4.108 7 Cl -0.042 7.042 8 C -0.092 4.092 9 C -0.117 4.117 10 C -0.101 4.101 11 C 0.025 3.975 12 N -0.409 5.409 13 C 0.339 3.661 14 O -0.523 6.523 15 C -0.610 4.610 16 H 0.108 0.892 17 C -0.188 4.188 18 N -0.453 5.453 19 Si 0.820 3.180 20 H -0.186 1.186 21 H -0.198 1.198 22 H -0.171 1.171 23 H 0.129 0.871 24 H 0.096 0.904 25 H 0.083 0.917 26 H 0.183 0.817 27 H 0.177 0.823 28 H 0.163 0.837 29 H 0.112 0.888 30 H 0.104 0.896 31 H 0.042 0.958 32 H 0.045 0.955 33 H 0.231 0.769 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.893 12.329 13.772 20.965 hybrid contribution 0.310 -0.381 -0.111 0.504 sum -9.582 11.948 13.660 20.523 Atomic orbital electron populations 1.23394 0.76285 1.05519 1.02642 1.86147 1.23628 1.26629 1.88015 1.19165 0.91899 0.85382 0.95508 1.21454 1.01647 0.90639 1.07455 1.21108 0.92018 0.98948 0.96793 1.20854 0.93465 0.86559 1.09908 1.98356 1.80796 1.27831 1.97225 1.20926 1.00955 0.89535 0.97790 1.19103 0.91201 0.95135 1.06252 1.20458 1.00298 0.94389 0.94974 1.20765 0.93648 0.86631 0.96477 1.45793 1.58245 1.27661 1.09194 1.18683 0.80317 0.85107 0.81990 1.90547 1.58946 1.69523 1.33297 1.21456 1.35254 1.09046 0.95225 0.89189 1.27032 0.95618 1.02126 0.94046 1.70206 1.37349 1.38441 0.99342 0.84974 0.78075 0.75979 0.78956 1.18561 1.19835 1.17056 0.87125 0.90369 0.91739 0.81745 0.82258 0.83722 0.88811 0.89619 0.95773 0.95467 0.76911 0.91588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.36 16 2 O -0.33 -8.62 9.63 -92.74 -0.89 -9.52 16 3 C 0.13 3.22 6.66 22.50 0.15 3.37 16 4 C -0.19 -3.76 9.04 22.36 0.20 -3.56 16 5 C -0.07 -1.33 9.82 22.28 0.22 -1.11 16 6 C -0.08 -1.81 6.32 22.33 0.14 -1.67 16 7 Cl -0.07 -1.46 28.95 -2.72 -0.08 -1.54 16 8 C -0.07 -1.83 9.46 22.28 0.21 -1.62 16 9 C -0.12 -3.17 5.15 -19.77 -0.10 -3.27 16 10 C -0.06 -1.90 5.18 29.85 0.15 -1.74 16 11 C 0.15 6.24 5.66 86.38 0.49 6.72 16 12 N -0.75 -35.45 5.55 -467.41 -2.59 -38.04 16 13 C 0.53 32.28 7.75 86.36 0.67 32.95 16 14 O -0.64 -44.48 15.02 -4.31 -0.06 -44.54 16 15 C -0.57 -33.22 9.54 24.83 0.24 -32.98 16 16 H 0.09 4.63 7.85 -2.91 -0.02 4.60 16 17 C 0.03 1.51 5.50 85.30 0.47 1.98 16 18 N -0.82 -51.62 11.83 21.84 0.26 -51.36 16 19 Si 1.00 41.42 29.56 68.60 2.03 43.45 16 20 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 21 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 22 H -0.25 -9.44 7.11 99.48 0.71 -8.74 16 23 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 24 H 0.08 0.86 7.67 -2.38 -0.02 0.84 16 25 H 0.06 0.92 7.65 -2.39 -0.02 0.90 16 26 H 0.17 2.14 6.30 -2.92 -0.02 2.12 16 27 H 0.16 2.12 8.06 -2.91 -0.02 2.09 16 28 H 0.15 3.33 8.06 -2.91 -0.02 3.31 16 29 H 0.09 2.42 8.05 -2.39 -0.02 2.40 16 30 H 0.09 2.47 7.69 -2.38 -0.02 2.45 16 31 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.03 1.23 8.14 -2.38 -0.02 1.21 16 33 H 0.40 15.73 8.45 -92.71 -0.78 14.94 16 34 H 0.27 15.51 8.29 -92.71 -0.77 14.74 16 Total: -1.00 -80.35 314.24 2.95 -77.40 By element: Atomic # 1 Polarization: 23.37 SS G_CDS: 0.35 Total: 23.72 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: 3.95 Total: 0.44 kcal Atomic # 7 Polarization: -87.06 SS G_CDS: -2.34 Total: -89.40 kcal Atomic # 8 Polarization: -53.10 SS G_CDS: -0.96 Total: -54.06 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.45 kcal Atomic # 17 Polarization: -1.46 SS G_CDS: -0.08 Total: -1.54 kcal Total: -80.35 2.95 -77.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000011891908.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.197 kcal (2) G-P(sol) polarization free energy of solvation -80.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds