Wall clock time and date at job start Tue Mar 31 2020 05:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46500 * 119.99709 * 2 1 4 4 C 1.50698 * 109.47247 * 270.00180 * 3 2 1 5 5 H 1.07999 * 120.00072 * 359.97438 * 4 3 2 6 6 C 1.37875 * 120.00384 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99510 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 120.00464 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47349 * 59.99258 * 8 6 4 10 10 H 1.48500 * 109.47341 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46793 * 299.99476 * 8 6 4 12 12 C 1.34768 * 120.00081 * 179.97438 * 2 1 3 13 13 O 1.21289 * 120.00243 * 179.97438 * 12 2 1 14 14 C 1.50702 * 120.00585 * 0.02562 * 12 2 1 15 15 O 1.42893 * 109.47853 * 179.97438 * 14 12 2 16 16 C 1.35916 * 117.00323 * 179.97438 * 15 14 12 17 17 C 1.38728 * 120.04362 * 0.27384 * 16 15 14 18 18 C 1.38137 * 119.95782 * 180.23553 * 17 16 15 19 19 C 1.38365 * 120.04335 * 359.48598 * 18 17 16 20 20 Cl 1.73604 * 119.96019 * 180.27880 * 19 18 17 21 21 C 1.38371 * 120.08418 * 0.25849 * 19 18 17 22 22 C 1.38143 * 120.04298 * 0.02562 * 21 19 18 23 23 H 1.09000 * 109.46946 * 269.99934 * 1 2 3 24 24 H 1.08991 * 109.47097 * 30.00101 * 1 2 3 25 25 H 1.09004 * 109.46815 * 150.00268 * 1 2 3 26 26 H 1.08995 * 109.47224 * 30.00137 * 3 2 1 27 27 H 1.09001 * 109.47214 * 149.99963 * 3 2 1 28 28 H 0.97003 * 120.00033 * 180.02562 * 7 6 4 29 29 H 1.08998 * 109.47224 * 59.99117 * 14 12 2 30 30 H 1.09008 * 109.46441 * 299.99618 * 14 12 2 31 31 H 1.07998 * 120.01718 * 359.97438 * 17 16 15 32 32 H 1.08002 * 119.98114 * 179.77139 * 18 17 16 33 33 H 1.08001 * 119.97793 * 180.02562 * 21 19 18 34 34 H 1.07998 * 120.01925 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0981 1.0959 -2.2417 6 6 3.1268 2.8775 -1.6728 7 7 3.5541 3.6176 -0.6731 8 14 3.4374 3.4172 -3.4339 9 1 2.1396 3.5955 -4.1333 10 1 4.1800 4.7033 -3.4339 11 1 4.2393 2.3822 -4.1346 12 6 2.1389 -1.1671 0.0005 13 8 3.3518 -1.1671 0.0001 14 6 1.3856 -2.4723 0.0005 15 8 2.3141 -3.5584 0.0005 16 6 1.7947 -4.8144 0.0011 17 6 0.4195 -4.9973 -0.0042 18 6 -0.1065 -6.2746 0.0013 19 6 0.7372 -7.3712 0.0013 20 17 0.0737 -8.9755 0.0008 21 6 2.1091 -7.1909 0.0011 22 6 2.6390 -5.9151 0.0016 23 1 -0.3633 0.0000 1.0277 24 1 -0.3633 0.8899 -0.5138 25 1 -0.3633 -0.8901 -0.5138 26 1 1.6084 2.0283 0.5138 27 1 3.1499 1.1385 0.5138 28 1 4.0309 4.4436 -0.8503 29 1 0.7591 -2.5303 -0.8896 30 1 0.7586 -2.5299 0.8904 31 1 -0.2393 -4.1416 -0.0082 32 1 -1.1771 -6.4174 0.0010 33 1 2.7660 -8.0481 0.0007 34 1 3.7098 -5.7748 0.0010 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019833775.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:06 Heat of formation + Delta-G solvation = -49.540730 kcal Electronic energy + Delta-G solvation = -19064.263603 eV Core-core repulsion = 15795.772460 eV Total energy + Delta-G solvation = -3268.491143 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.45790 -38.98623 -37.59598 -36.33647 -34.91654 -32.70647 -31.49163 -30.24646 -28.86505 -27.22083 -25.74416 -23.40502 -22.81098 -22.04725 -18.79492 -18.58512 -16.76551 -16.68716 -16.58053 -16.14172 -15.79978 -15.19540 -14.69635 -14.40417 -14.26528 -13.79707 -13.50696 -13.30236 -12.60149 -12.56964 -12.39375 -12.25364 -11.96265 -11.80135 -11.51889 -11.26024 -10.98019 -10.97537 -10.80447 -10.62288 -10.20952 -9.71694 -9.38669 -9.05541 -8.48044 -8.32396 -7.79486 -6.09325 -4.14715 0.96163 1.00167 1.93604 2.78481 3.18599 3.29477 3.34224 3.37623 3.38552 3.99122 4.40313 4.46151 4.54131 4.78435 4.90803 5.01105 5.09359 5.11777 5.24306 5.25701 5.48780 5.64336 5.72808 5.78268 5.97175 6.02124 6.07803 6.30658 6.89192 7.19154 7.34055 7.42124 7.86124 8.15599 8.22580 8.79615 8.94028 9.50499 10.98855 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.037291 B = 0.002914 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.681088 B = 9607.963433 C = 9750.713483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.598 5.598 3 C 0.247 3.753 4 C -0.531 4.531 5 H 0.057 0.943 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.900 3.100 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.506 3.494 13 O -0.517 6.517 14 C 0.040 3.960 15 O -0.282 6.282 16 C 0.143 3.857 17 C -0.202 4.202 18 C -0.068 4.068 19 C -0.080 4.080 20 Cl -0.078 7.078 21 C -0.069 4.069 22 C -0.139 4.139 23 H 0.048 0.952 24 H 0.079 0.921 25 H 0.055 0.945 26 H 0.036 0.964 27 H 0.046 0.954 28 H 0.265 0.735 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.138 0.862 32 H 0.135 0.865 33 H 0.139 0.861 34 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.223 -19.671 2.600 22.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.332 5.332 3 C 0.128 3.872 4 C -0.570 4.570 5 H 0.076 0.924 6 C -0.140 4.140 7 N -0.533 5.533 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.201 1.201 12 C 0.290 3.710 13 O -0.392 6.392 14 C -0.039 4.039 15 O -0.194 6.194 16 C 0.097 3.903 17 C -0.221 4.221 18 C -0.086 4.086 19 C -0.106 4.106 20 Cl -0.049 7.049 21 C -0.088 4.088 22 C -0.158 4.158 23 H 0.067 0.933 24 H 0.098 0.902 25 H 0.073 0.927 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.156 0.844 32 H 0.153 0.847 33 H 0.157 0.843 34 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -9.318 -19.530 2.650 21.801 hybrid contribution -0.303 0.311 -1.003 1.093 sum -9.621 -19.220 1.648 21.556 Atomic orbital electron populations 1.21720 0.81211 1.02855 1.00734 1.48099 1.06285 1.07266 1.71553 1.19355 0.92649 0.77454 0.97739 1.21376 1.36972 1.06448 0.92156 0.92445 1.24937 0.95206 0.96327 0.97568 1.69919 1.38126 1.14362 1.30865 0.86533 0.78397 0.77875 0.84484 1.20218 1.21111 1.20101 1.19673 0.88172 0.84210 0.78945 1.90731 1.13412 1.86643 1.48421 1.22751 0.92149 0.85898 1.03069 1.86232 1.34552 1.11186 1.87386 1.19232 0.91887 0.85216 0.94006 1.21269 0.94093 0.98145 1.08605 1.20810 0.99922 0.90469 0.97445 1.20755 0.93574 0.85912 1.10397 1.98356 1.86017 1.23268 1.97280 1.20851 0.93047 0.97128 0.97756 1.20448 1.00655 0.89342 1.05371 0.93316 0.90197 0.92667 0.94578 0.93634 0.92552 0.89298 0.89426 0.84388 0.84715 0.84302 0.83896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.12 10.24 59.85 0.61 1.73 16 2 N -0.60 -12.17 2.86 -182.95 -0.52 -12.70 16 3 C 0.25 6.31 5.16 -5.19 -0.03 6.29 16 4 C -0.53 -14.83 9.39 -34.44 -0.32 -15.15 16 5 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 7 N -0.89 -26.29 13.29 55.43 0.74 -25.55 16 8 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 9 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 10 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 C 0.51 10.38 7.75 -10.99 -0.09 10.29 16 13 O -0.52 -13.31 16.08 -14.36 -0.23 -13.54 16 14 C 0.04 0.58 3.77 36.01 0.14 0.71 16 15 O -0.28 -4.51 9.67 -39.39 -0.38 -4.90 16 16 C 0.14 1.83 6.69 -39.22 -0.26 1.57 16 17 C -0.20 -2.09 9.04 -39.44 -0.36 -2.45 16 18 C -0.07 -0.64 9.82 -39.57 -0.39 -1.03 16 19 C -0.08 -0.79 6.32 -39.49 -0.25 -1.04 16 20 Cl -0.08 -0.71 28.95 -51.86 -1.50 -2.21 16 21 C -0.07 -0.68 9.82 -39.57 -0.39 -1.06 16 22 C -0.14 -1.59 9.99 -39.44 -0.39 -1.99 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.08 1.18 8.07 -51.93 -0.42 0.77 16 25 H 0.05 0.60 6.44 -51.93 -0.33 0.26 16 26 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 27 H 0.05 1.32 7.42 -51.93 -0.39 0.94 16 28 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 29 H 0.09 1.06 6.91 -51.93 -0.36 0.70 16 30 H 0.09 0.98 7.64 -51.92 -0.40 0.59 16 31 H 0.14 1.15 6.30 -52.49 -0.33 0.82 16 32 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 33 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 34 H 0.14 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 314.44 15.07 4.74 4.74 Total: -1.00 -33.53 314.44 -7.89 -41.42 By element: Atomic # 1 Polarization: 0.46 SS G_CDS: -3.88 Total: -3.42 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: -1.82 Total: -0.46 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: 0.21 Total: -38.25 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: -0.61 Total: -18.43 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.50 Total: -2.21 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -33.53 -7.89 -41.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019833775.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.122 kcal (2) G-P(sol) polarization free energy of solvation -33.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds