Wall clock time and date at job start Tue Mar 31 2020 05:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99537 * 2 1 4 4 C 1.50697 * 109.46949 * 269.99553 * 3 2 1 5 5 H 1.08004 * 120.00186 * 0.02562 * 4 3 2 6 6 C 1.37881 * 120.00081 * 180.02562 * 4 3 2 7 7 N 1.31519 * 120.00096 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 120.00103 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.46956 * 89.99765 * 8 6 4 10 10 H 1.48497 * 109.47226 * 210.00189 * 8 6 4 11 11 H 1.48501 * 109.47027 * 329.99834 * 8 6 4 12 12 C 1.34777 * 120.00264 * 179.97438 * 2 1 3 13 13 O 1.21283 * 119.99750 * 180.02562 * 12 2 1 14 14 C 1.50702 * 119.99928 * 0.28128 * 12 2 1 15 15 O 1.42899 * 109.46876 * 179.72354 * 14 12 2 16 16 C 1.35897 * 116.99793 * 179.97438 * 15 14 12 17 17 C 1.38769 * 120.04825 * 359.72173 * 16 15 14 18 18 C 1.38132 * 119.96714 * 179.74971 * 17 16 15 19 19 C 1.38266 * 120.06777 * 0.54733 * 18 17 16 20 20 C 1.38363 * 120.10278 * 359.70811 * 19 18 17 21 21 Cl 1.73591 * 119.98844 * 180.02562 * 20 19 18 22 22 C 1.38289 * 120.02324 * 0.02562 * 20 19 18 23 23 H 1.08998 * 109.46921 * 269.99744 * 1 2 3 24 24 H 1.08994 * 109.46996 * 30.00327 * 1 2 3 25 25 H 1.09001 * 109.46578 * 150.00190 * 1 2 3 26 26 H 1.09001 * 109.47567 * 29.99407 * 3 2 1 27 27 H 1.09005 * 109.47076 * 149.99913 * 3 2 1 28 28 H 0.96991 * 119.99957 * 180.02562 * 7 6 4 29 29 H 1.09004 * 109.46965 * 299.72211 * 14 12 2 30 30 H 1.08994 * 109.46990 * 59.72065 * 14 12 2 31 31 H 1.07991 * 120.01401 * 0.02562 * 17 16 15 32 32 H 1.07997 * 119.96222 * 180.25423 * 18 17 16 33 33 H 1.07999 * 119.94735 * 179.72548 * 19 18 17 34 34 H 1.08002 * 120.02770 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1268 2.8775 -1.6728 7 7 3.5549 3.6172 -0.6732 8 14 3.4376 3.4170 -3.4340 9 1 2.3077 4.2605 -3.9000 10 1 4.6982 4.1993 -3.4970 11 1 3.5539 2.2200 -4.3052 12 6 2.1390 -1.1672 0.0005 13 8 3.3518 -1.1671 0.0010 14 6 1.3855 -2.4723 -0.0053 15 8 2.3142 -3.5584 -0.0100 16 6 1.7949 -4.8142 -0.0151 17 6 0.4193 -4.9972 -0.0096 18 6 -0.1068 -6.2744 -0.0200 19 6 0.7357 -7.3707 -0.0244 20 6 2.1077 -7.1915 -0.0245 21 17 3.1628 -8.5700 -0.0306 22 6 2.6388 -5.9147 -0.0197 23 1 -0.3633 0.0000 1.0277 24 1 -0.3633 0.8899 -0.5139 25 1 -0.3632 -0.8900 -0.5138 26 1 1.6083 2.0285 0.5137 27 1 3.1499 1.1385 0.5139 28 1 4.0317 4.4431 -0.8505 29 1 0.7588 -2.5340 0.8844 30 1 0.7590 -2.5261 -0.8955 31 1 -0.2395 -4.1416 -0.0018 32 1 -1.1773 -6.4168 -0.0199 33 1 0.3223 -8.3684 -0.0280 34 1 3.7097 -5.7747 -0.0202 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034651580.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:11 Heat of formation + Delta-G solvation = -48.807173 kcal Electronic energy + Delta-G solvation = -19102.858575 eV Core-core repulsion = 15834.399241 eV Total energy + Delta-G solvation = -3268.459334 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.45139 -38.98081 -37.58572 -36.43875 -34.91272 -32.70342 -31.31336 -30.29868 -28.95697 -27.23104 -25.73844 -23.28871 -22.90005 -22.03397 -18.77848 -18.63339 -16.70774 -16.58070 -16.40204 -16.14108 -15.88713 -15.18215 -14.96298 -14.40827 -14.28278 -13.92289 -13.49024 -13.28710 -12.57071 -12.52840 -12.25390 -12.11659 -11.96190 -11.78574 -11.45600 -11.25428 -11.12371 -11.04394 -10.90450 -10.63113 -10.20389 -9.69508 -9.11221 -9.04854 -8.48087 -8.46868 -7.78839 -6.09096 -4.14365 0.86691 1.10669 1.79207 2.84992 3.19443 3.27837 3.35133 3.38565 3.40164 4.00799 4.40941 4.47844 4.73021 4.80370 4.83515 5.00222 5.07194 5.09988 5.16037 5.25833 5.48890 5.56268 5.78441 5.89449 6.02366 6.06099 6.07795 6.26989 6.89631 7.19764 7.34647 7.42798 7.86599 8.15990 8.23058 8.80298 8.94718 9.50917 10.99133 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.029334 B = 0.003133 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.297067 B = 8934.521337 C = 9348.778548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.598 5.598 3 C 0.246 3.754 4 C -0.530 4.530 5 H 0.058 0.942 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.284 1.284 11 H -0.274 1.274 12 C 0.506 3.494 13 O -0.516 6.516 14 C 0.041 3.959 15 O -0.282 6.282 16 C 0.151 3.849 17 C -0.209 4.209 18 C -0.066 4.066 19 C -0.155 4.155 20 C 0.005 3.995 21 Cl -0.066 7.066 22 C -0.145 4.145 23 H 0.048 0.952 24 H 0.079 0.921 25 H 0.055 0.945 26 H 0.036 0.964 27 H 0.046 0.954 28 H 0.264 0.736 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.136 0.864 32 H 0.135 0.865 33 H 0.133 0.867 34 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.564 -19.812 2.559 22.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.332 5.332 3 C 0.128 3.872 4 C -0.569 4.569 5 H 0.076 0.924 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.198 1.198 12 C 0.290 3.710 13 O -0.391 6.391 14 C -0.037 4.037 15 O -0.194 6.194 16 C 0.104 3.896 17 C -0.228 4.228 18 C -0.084 4.084 19 C -0.174 4.174 20 C -0.022 4.022 21 Cl -0.037 7.037 22 C -0.165 4.165 23 H 0.067 0.933 24 H 0.098 0.902 25 H 0.073 0.927 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.106 0.894 30 H 0.107 0.893 31 H 0.153 0.847 32 H 0.153 0.847 33 H 0.151 0.849 34 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -9.497 -19.662 2.608 21.990 hybrid contribution -0.104 0.346 -0.996 1.059 sum -9.601 -19.316 1.612 21.630 Atomic orbital electron populations 1.21718 0.81223 1.02844 1.00723 1.48098 1.06275 1.07254 1.71591 1.19359 0.92656 0.77449 0.97749 1.21418 1.36857 1.06431 0.92182 0.92383 1.24941 0.95205 0.96350 0.97570 1.69926 1.38196 1.14336 1.30809 0.86472 0.77728 0.78619 0.84478 1.20601 1.21009 1.19839 1.19675 0.88178 0.84209 0.78958 1.90732 1.13411 1.86632 1.48363 1.22748 0.92111 0.85813 1.03072 1.86220 1.34558 1.11080 1.87498 1.18895 0.91554 0.84901 0.94279 1.21428 0.93924 0.99057 1.08373 1.20878 0.99884 0.91163 0.96508 1.20924 0.91020 1.00043 1.05441 1.20547 0.91087 0.87800 1.02743 1.98377 1.66307 1.42175 1.96802 1.20249 1.01055 0.88566 1.06595 0.93326 0.90206 0.92671 0.94589 0.93624 0.92610 0.89423 0.89277 0.84670 0.84741 0.84906 0.83834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.12 10.25 59.85 0.61 1.74 16 2 N -0.60 -12.21 2.86 -182.95 -0.52 -12.73 16 3 C 0.25 6.32 5.16 -5.20 -0.03 6.30 16 4 C -0.53 -14.85 9.39 -34.44 -0.32 -15.17 16 5 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 7 N -0.89 -26.34 13.29 55.43 0.74 -25.61 16 8 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 9 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 12 C 0.51 10.44 7.75 -10.98 -0.09 10.36 16 13 O -0.52 -13.39 16.08 -14.35 -0.23 -13.62 16 14 C 0.04 0.60 3.77 36.01 0.14 0.74 16 15 O -0.28 -4.62 9.67 -39.32 -0.38 -5.00 16 16 C 0.15 1.99 6.69 -39.22 -0.26 1.73 16 17 C -0.21 -2.14 9.04 -39.42 -0.36 -2.49 16 18 C -0.07 -0.56 10.04 -39.61 -0.40 -0.96 16 19 C -0.16 -1.42 9.83 -39.53 -0.39 -1.81 16 20 C 0.00 0.05 6.32 -39.52 -0.25 -0.20 16 21 Cl -0.07 -0.66 28.95 -51.86 -1.50 -2.16 16 22 C -0.15 -1.83 9.77 -39.40 -0.38 -2.21 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 24 H 0.08 1.18 8.07 -51.93 -0.42 0.76 16 25 H 0.05 0.60 6.43 -51.93 -0.33 0.26 16 26 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 27 H 0.05 1.33 7.42 -51.93 -0.39 0.94 16 28 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 29 H 0.09 0.99 7.62 -51.93 -0.40 0.59 16 30 H 0.09 1.07 6.93 -51.93 -0.36 0.71 16 31 H 0.14 1.10 6.30 -52.49 -0.33 0.77 16 32 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 33 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 34 H 0.14 1.81 8.06 -52.49 -0.42 1.39 16 LS Contribution 314.43 15.07 4.74 4.74 Total: -1.00 -33.76 314.43 -7.88 -41.65 By element: Atomic # 1 Polarization: 0.28 SS G_CDS: -3.88 Total: -3.60 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: -1.82 Total: -0.35 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: 0.21 Total: -38.34 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: -0.61 Total: -18.61 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -1.50 Total: -2.16 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -33.76 -7.88 -41.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034651580.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.159 kcal (2) G-P(sol) polarization free energy of solvation -33.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds