Wall clock time and date at job start Tue Mar 31 2020 05:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46497 * 120.00129 * 2 1 4 4 C 1.50709 * 109.47273 * 270.00327 * 3 2 1 5 5 C 1.38264 * 119.98497 * 269.72780 * 4 3 2 6 6 C 1.38224 * 120.04903 * 179.72879 * 5 4 3 7 7 C 1.38217 * 120.02445 * 0.54020 * 6 5 4 8 8 C 1.38440 * 119.97446 * 359.72935 * 7 6 5 9 9 F 1.35107 * 120.02365 * 180.02562 * 8 7 6 10 10 C 1.38179 * 119.98716 * 89.99630 * 4 3 2 11 11 C 1.34777 * 120.00345 * 180.02562 * 2 1 3 12 12 O 1.21283 * 120.00463 * 179.97438 * 11 2 1 13 13 C 1.50700 * 119.99675 * 359.72090 * 11 2 1 14 14 S 1.80997 * 109.47151 * 180.27780 * 13 11 2 15 15 C 1.76196 * 100.00314 * 179.97438 * 14 13 11 16 16 H 1.08005 * 120.00018 * 0.02562 * 15 14 13 17 17 C 1.38799 * 120.00626 * 179.97438 * 15 14 13 18 18 N 1.31633 * 119.99674 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00584 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47157 * 59.99781 * 19 17 15 21 21 H 1.48496 * 109.47271 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.46802 * 300.00045 * 19 17 15 23 23 H 1.08997 * 109.47115 * 269.99822 * 1 2 3 24 24 H 1.08995 * 109.47364 * 30.00213 * 1 2 3 25 25 H 1.09002 * 109.47090 * 149.99764 * 1 2 3 26 26 H 1.09000 * 109.46889 * 29.99981 * 3 2 1 27 27 H 1.09001 * 109.47460 * 150.00590 * 3 2 1 28 28 H 1.08004 * 119.97579 * 359.97174 * 5 4 3 29 29 H 1.07997 * 119.98767 * 180.27242 * 6 5 4 30 30 H 1.08000 * 120.01322 * 179.75545 * 7 6 5 31 31 H 1.08001 * 120.01300 * 359.97438 * 10 4 3 32 32 H 1.09009 * 109.47352 * 300.27556 * 13 11 2 33 33 H 1.08998 * 109.47585 * 60.27844 * 13 11 2 34 34 H 0.97003 * 120.00297 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4209 5 6 3.6036 1.3092 -2.0705 6 6 3.8326 1.7028 -3.3756 7 6 2.9124 2.5008 -4.0289 8 6 1.7582 2.9012 -3.3775 9 9 0.8578 3.6808 -4.0153 10 6 1.5272 2.5016 -2.0720 11 6 2.1389 -1.1672 -0.0005 12 8 3.3517 -1.1672 -0.0010 13 6 1.3854 -2.4723 0.0053 14 16 2.5616 -3.8480 0.0113 15 6 1.4416 -5.2082 0.0181 16 1 0.3763 -5.0305 0.0172 17 6 1.9283 -6.5080 0.0235 18 7 3.2267 -6.7246 0.0230 19 14 0.7410 -7.9500 0.0300 20 1 -0.1145 -7.8923 -1.1825 21 1 1.5071 -9.2221 0.0346 22 1 -0.1137 -7.8819 1.2424 23 1 -0.3633 0.0000 1.0276 24 1 -0.3634 0.8899 -0.5138 25 1 -0.3633 -0.8900 -0.5139 26 1 1.6084 2.0283 0.5138 27 1 3.1500 1.1384 0.5137 28 1 4.3255 0.6896 -1.5592 29 1 4.7330 1.3903 -3.8836 30 1 3.0934 2.8116 -5.0472 31 1 0.6270 2.8130 -1.5630 32 1 0.7588 -2.5261 0.8956 33 1 0.7587 -2.5340 -0.8844 34 1 3.5669 -7.6330 0.0272 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041763798.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:35 Heat of formation + Delta-G solvation = -55.446585 kcal Electronic energy + Delta-G solvation = -19098.075988 eV Core-core repulsion = 15843.745243 eV Total energy + Delta-G solvation = -3254.330745 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.078 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.02648 -39.93946 -38.65638 -35.42095 -32.43828 -32.23452 -30.67581 -29.30938 -27.28664 -25.68866 -25.24551 -22.85980 -21.85585 -19.32153 -17.69082 -17.50108 -16.74862 -16.29651 -16.26660 -15.86432 -15.63298 -15.45131 -14.81250 -14.18311 -13.97338 -13.61607 -13.52123 -13.05058 -12.95754 -12.64449 -12.50130 -12.25483 -11.97621 -11.93618 -11.64512 -11.23487 -11.05401 -11.04564 -10.77641 -9.83077 -9.54010 -9.11507 -9.06791 -8.79452 -8.60860 -8.24984 -6.51361 -6.22584 -3.93306 0.97814 1.07104 2.90810 3.00777 3.22813 3.24206 3.28196 3.47284 3.70590 4.07272 4.19564 4.52179 4.58336 4.80743 4.93545 5.08874 5.12483 5.12963 5.17651 5.27439 5.40036 5.56157 5.60574 5.68367 5.72677 5.88289 5.93989 5.95993 6.11997 6.23295 6.39604 6.54429 6.77139 7.46729 7.58329 8.33912 8.50517 9.22688 10.84790 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.026960 B = 0.003541 C = 0.003504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.320370 B = 7904.487455 C = 7988.498292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.621 5.621 3 C 0.155 3.845 4 C -0.076 4.076 5 C -0.102 4.102 6 C -0.092 4.092 7 C -0.153 4.153 8 C 0.089 3.911 9 F -0.144 7.144 10 C -0.143 4.143 11 C 0.535 3.465 12 O -0.513 6.513 13 C -0.150 4.150 14 S -0.060 6.060 15 C -0.536 4.536 16 H 0.072 0.928 17 C 0.074 3.926 18 N -0.868 5.868 19 Si 0.918 3.082 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.274 1.274 23 H 0.057 0.943 24 H 0.066 0.934 25 H 0.076 0.924 26 H 0.085 0.915 27 H 0.097 0.903 28 H 0.139 0.861 29 H 0.134 0.866 30 H 0.133 0.867 31 H 0.132 0.868 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.535 19.233 -3.480 20.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.356 5.356 3 C 0.033 3.967 4 C -0.078 4.078 5 C -0.120 4.120 6 C -0.110 4.110 7 C -0.172 4.172 8 C 0.070 3.930 9 F -0.122 7.122 10 C -0.162 4.162 11 C 0.323 3.677 12 O -0.387 6.387 13 C -0.301 4.301 14 S 0.166 5.834 15 C -0.684 4.684 16 H 0.090 0.910 17 C -0.135 4.135 18 N -0.503 5.503 19 Si 0.744 3.256 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.199 1.199 23 H 0.075 0.925 24 H 0.085 0.915 25 H 0.094 0.906 26 H 0.103 0.897 27 H 0.116 0.884 28 H 0.157 0.843 29 H 0.152 0.848 30 H 0.151 0.849 31 H 0.150 0.850 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.633 19.110 -3.479 19.602 hybrid contribution -2.510 -0.770 -0.263 2.639 sum -5.144 18.340 -3.742 19.412 Atomic orbital electron populations 1.21791 0.79528 1.03232 1.01828 1.47902 1.06841 1.05159 1.75728 1.20305 0.99125 0.85519 0.91793 1.20177 0.93987 0.96208 0.97423 1.21408 0.97486 0.98405 0.94746 1.21089 0.98999 0.96266 0.94646 1.21167 0.94005 1.00993 1.01055 1.17659 0.88790 0.94907 0.91654 1.91488 1.66418 1.72483 1.81845 1.20992 1.00803 1.00880 0.93555 1.20369 0.87977 0.84515 0.74845 1.90668 1.13650 1.86739 1.47666 1.23560 1.04597 0.97193 1.04721 1.85354 1.08018 0.93295 1.96711 1.22820 0.94281 0.92237 1.59099 0.91011 1.24981 0.95665 0.98346 0.94497 1.70006 1.11747 1.21775 1.46770 0.86232 0.80204 0.80310 0.78814 1.19940 1.20796 1.19920 0.92455 0.91497 0.90577 0.89663 0.88439 0.84269 0.84842 0.84948 0.85034 0.89233 0.89300 0.92124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.80 10.24 59.84 0.61 1.42 16 2 N -0.62 -8.38 2.86 -182.96 -0.52 -8.91 16 3 C 0.16 1.77 5.53 -5.19 -0.03 1.74 16 4 C -0.08 -0.90 5.46 -104.63 -0.57 -1.47 16 5 C -0.10 -1.28 9.70 -39.58 -0.38 -1.66 16 6 C -0.09 -1.01 10.04 -39.59 -0.40 -1.41 16 7 C -0.15 -1.63 10.03 -39.51 -0.40 -2.02 16 8 C 0.09 1.01 7.30 -39.42 -0.29 0.72 16 9 F -0.14 -1.68 17.27 2.25 0.04 -1.64 16 10 C -0.14 -1.53 9.68 -39.52 -0.38 -1.91 16 11 C 0.53 9.79 7.69 -10.98 -0.08 9.71 16 12 O -0.51 -10.99 14.99 5.55 0.08 -10.91 16 13 C -0.15 -3.01 4.71 36.01 0.17 -2.84 16 14 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 15 C -0.54 -15.16 9.50 30.94 0.29 -14.87 16 16 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 17 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 18 N -0.87 -25.99 13.22 55.49 0.73 -25.26 16 19 Si 0.92 21.26 29.55 -169.99 -5.02 16.24 16 20 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 23 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.07 0.53 8.07 -51.93 -0.42 0.11 16 25 H 0.08 0.81 6.45 -51.93 -0.33 0.47 16 26 H 0.09 0.71 8.02 -51.93 -0.42 0.29 16 27 H 0.10 1.21 7.36 -51.93 -0.38 0.83 16 28 H 0.14 1.92 7.60 -52.48 -0.40 1.52 16 29 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 30 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 31 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 32 H 0.09 1.66 8.11 -51.91 -0.42 1.24 16 33 H 0.09 1.67 7.41 -51.92 -0.38 1.29 16 34 H 0.27 7.50 8.31 -40.82 -0.34 7.17 16 LS Contribution 316.60 15.07 4.77 4.77 Total: -1.00 -33.34 316.60 -7.68 -41.02 By element: Atomic # 1 Polarization: 3.09 SS G_CDS: -3.99 Total: -0.90 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: -1.55 Total: -10.58 kcal Atomic # 7 Polarization: -34.38 SS G_CDS: 0.21 Total: -34.17 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.08 Total: -10.91 kcal Atomic # 9 Polarization: -1.68 SS G_CDS: 0.04 Total: -1.64 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -33.34 -7.68 -41.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041763798.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.426 kcal (2) G-P(sol) polarization free energy of solvation -33.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds