Wall clock time and date at job start Tue Mar 31 2020 05:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35656 * 117.00182 * 2 1 4 4 C 1.38644 * 120.13923 * 359.72127 * 3 2 1 5 5 C 1.38209 * 120.06807 * 179.77328 * 4 3 2 6 6 Cl 1.73593 * 119.81862 * 180.25327 * 5 4 3 7 7 C 1.38702 * 120.36015 * 0.50204 * 5 4 3 8 8 C 1.37726 * 120.29213 * 359.75208 * 7 5 4 9 9 C 1.39753 * 119.91864 * 359.97438 * 8 7 5 10 10 C 1.47475 * 120.17731 * 179.97438 * 9 8 7 11 11 O 1.21591 * 120.00057 * 126.95412 * 10 9 8 12 12 N 1.34779 * 119.99881 * 306.94643 * 10 9 8 13 13 C 1.46500 * 119.99895 * 4.92020 * 12 10 9 14 14 C 1.46497 * 119.99895 * 184.91579 * 12 10 9 15 15 C 1.50697 * 109.47042 * 90.00605 * 14 12 10 16 16 H 1.08006 * 119.99668 * 359.97438 * 15 14 12 17 17 C 1.37879 * 120.00128 * 179.97438 * 15 14 12 18 18 N 1.31512 * 119.99545 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00144 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47393 * 90.00000 * 19 17 15 21 21 H 1.48504 * 109.47121 * 210.00303 * 19 17 15 22 22 H 1.48500 * 109.47208 * 329.99966 * 19 17 15 23 23 H 1.09000 * 109.47058 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.46845 * 60.00517 * 1 2 3 25 25 H 1.08996 * 109.46973 * 300.00292 * 1 2 3 26 26 H 1.07994 * 119.96476 * 359.97438 * 4 3 2 27 27 H 1.08006 * 119.85415 * 179.72554 * 7 5 4 28 28 H 1.08000 * 120.04498 * 179.97438 * 8 7 5 29 29 H 1.09003 * 109.47004 * 125.44477 * 13 12 10 30 30 H 1.08994 * 109.47348 * 245.44839 * 13 12 10 31 31 H 1.09001 * 109.47497 * 5.44651 * 13 12 10 32 32 H 1.09003 * 109.46727 * 210.00337 * 14 12 10 33 33 H 1.09000 * 109.47326 * 330.00189 * 14 12 10 34 34 H 0.97003 * 119.99521 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2927 2.3733 -0.0058 5 6 1.9217 3.6040 -0.0011 6 17 0.9734 5.0580 -0.0018 7 6 3.3064 3.6835 -0.0010 8 6 4.0682 2.5361 -0.0004 9 6 3.4446 1.2854 0.0005 10 6 4.2547 0.0531 0.0005 11 8 4.0603 -0.8023 0.8425 12 7 5.2105 -0.1249 -0.9329 13 6 5.5184 0.9493 -1.8802 14 6 5.9416 -1.3927 -1.0000 15 6 5.2191 -2.3410 -1.9218 16 1 4.3063 -2.0305 -2.4086 17 6 5.7232 -3.6050 -2.1437 18 7 6.8350 -3.9827 -1.5514 19 14 4.8273 -4.7807 -3.2857 20 1 5.3321 -4.6060 -4.6713 21 1 5.0664 -6.1782 -2.8442 22 1 3.3709 -4.4925 -3.2495 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 0.5139 0.8899 26 1 0.2141 2.3188 -0.0108 27 1 3.7894 4.6496 -0.0017 28 1 5.1461 2.6027 -0.0008 29 1 6.5840 1.1751 -1.8397 30 1 5.2523 0.6320 -2.8884 31 1 4.9480 1.8402 -1.6174 32 1 6.9473 -1.2124 -1.3798 33 1 6.0025 -1.8302 -0.0036 34 1 7.1894 -4.8721 -1.7072 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043565345.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:42 Heat of formation + Delta-G solvation = -40.812076 kcal Electronic energy + Delta-G solvation = -19979.212614 eV Core-core repulsion = 16711.099973 eV Total energy + Delta-G solvation = -3268.112641 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.54688 -38.55304 -37.65343 -36.38254 -34.76472 -32.66216 -31.18657 -30.37150 -27.87660 -27.20781 -25.92031 -23.93268 -22.51313 -22.10397 -19.32873 -17.99110 -16.72600 -16.62203 -16.45188 -15.83387 -15.41271 -15.23350 -14.56595 -14.37101 -14.15565 -13.74318 -13.43950 -13.09088 -12.53700 -12.39591 -12.10579 -11.98434 -11.82755 -11.73632 -11.36411 -11.21792 -11.15795 -10.88858 -10.78062 -10.53562 -10.13062 -9.60415 -9.11743 -8.85741 -8.41066 -8.29930 -7.60925 -6.01625 -4.05791 0.79793 1.19510 1.85790 3.17968 3.22151 3.31994 3.38311 3.42821 3.60770 4.04009 4.46719 4.59668 4.79138 4.90061 4.99256 5.10603 5.13476 5.32395 5.36065 5.39940 5.50830 5.63844 5.87697 5.95397 6.01758 6.11196 6.27106 6.41239 7.05875 7.28937 7.46822 7.55447 7.95107 8.26274 8.40392 8.91870 9.08916 9.58840 11.06623 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.024956 B = 0.004545 C = 0.004164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.715047 B = 6159.170719 C = 6721.976555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.285 6.285 3 C 0.185 3.815 4 C -0.210 4.210 5 C 0.016 3.984 6 Cl -0.070 7.070 7 C -0.156 4.156 8 C -0.043 4.043 9 C -0.142 4.142 10 C 0.555 3.445 11 O -0.524 6.524 12 N -0.595 5.595 13 C 0.069 3.931 14 C 0.246 3.754 15 C -0.525 4.525 16 H 0.057 0.943 17 C 0.061 3.939 18 N -0.895 5.895 19 Si 0.898 3.102 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.274 1.274 23 H 0.105 0.895 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.142 0.858 27 H 0.139 0.861 28 H 0.148 0.852 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.034 0.966 33 H 0.046 0.954 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.184 17.337 1.291 20.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.196 6.196 3 C 0.137 3.863 4 C -0.229 4.229 5 C -0.011 4.011 6 Cl -0.041 7.041 7 C -0.175 4.175 8 C -0.062 4.062 9 C -0.146 4.146 10 C 0.340 3.660 11 O -0.401 6.401 12 N -0.326 5.326 13 C -0.075 4.075 14 C 0.127 3.873 15 C -0.564 4.564 16 H 0.076 0.924 17 C -0.141 4.141 18 N -0.534 5.534 19 Si 0.726 3.274 20 H -0.207 1.207 21 H -0.211 1.211 22 H -0.199 1.199 23 H 0.123 0.877 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.160 0.840 27 H 0.157 0.843 28 H 0.165 0.835 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.052 0.948 33 H 0.064 0.936 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.142 16.612 1.744 19.541 hybrid contribution -0.821 -0.388 -0.797 1.208 sum -10.963 16.223 0.947 19.603 Atomic orbital electron populations 1.23174 0.78290 1.04625 1.01112 1.86334 1.21261 1.25177 1.86851 1.18777 0.90761 0.84412 0.92366 1.20992 1.00742 0.90331 1.10867 1.20709 0.91806 0.86919 1.01689 1.98368 1.72584 1.36437 1.96747 1.20831 0.91242 0.99482 1.05967 1.21126 1.00460 0.89684 0.94899 1.19739 0.91241 0.95582 1.08071 1.17755 0.80441 0.85331 0.82469 1.90775 1.67677 1.43806 1.37799 1.48054 1.36861 1.17178 1.30555 1.21989 1.00630 0.90594 0.94281 1.19313 0.90945 0.78270 0.98793 1.21433 1.09540 0.98356 1.27040 0.92439 1.24923 0.95070 0.97846 0.96241 1.69934 1.20492 1.19883 1.43139 0.86497 0.80153 0.80181 0.80606 1.20657 1.21077 1.19895 0.87706 0.92524 0.92480 0.84030 0.84324 0.83466 0.92339 0.92382 0.91053 0.94813 0.93568 0.92738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 101.05 0.99 1.25 16 2 O -0.29 -4.97 9.66 -23.21 -0.22 -5.19 16 3 C 0.19 2.98 6.68 -38.70 -0.26 2.72 16 4 C -0.21 -2.63 8.80 -39.44 -0.35 -2.98 16 5 C 0.02 0.18 6.32 -39.42 -0.25 -0.07 16 6 Cl -0.07 -0.69 28.94 -51.86 -1.50 -2.20 16 7 C -0.16 -1.72 9.80 -39.60 -0.39 -2.11 16 8 C -0.04 -0.56 7.33 -39.20 -0.29 -0.85 16 9 C -0.14 -2.45 5.06 -104.84 -0.53 -2.98 16 10 C 0.55 12.35 6.85 -12.50 -0.09 12.27 16 11 O -0.52 -14.01 16.26 0.75 0.01 -13.99 16 12 N -0.59 -13.10 2.86 -184.22 -0.53 -13.63 16 13 C 0.07 1.13 10.02 59.85 0.60 1.73 16 14 C 0.25 6.56 5.24 -5.20 -0.03 6.53 16 15 C -0.52 -15.19 9.39 -34.44 -0.32 -15.51 16 16 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 17 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 18 N -0.90 -26.86 13.29 55.43 0.74 -26.12 16 19 Si 0.90 22.12 29.54 -169.99 -5.02 17.10 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 23 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 24 H 0.06 0.53 7.65 -51.93 -0.40 0.13 16 25 H 0.06 0.53 7.67 -51.93 -0.40 0.13 16 26 H 0.14 1.44 6.30 -52.49 -0.33 1.11 16 27 H 0.14 1.16 8.06 -52.48 -0.42 0.74 16 28 H 0.15 1.64 7.09 -52.49 -0.37 1.26 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.07 0.96 3.92 -51.93 -0.20 0.75 16 32 H 0.03 0.90 8.07 -51.93 -0.42 0.48 16 33 H 0.05 1.38 7.36 -51.93 -0.38 1.00 16 34 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 309.30 15.07 4.66 4.66 Total: -1.00 -34.67 309.30 -6.60 -41.28 By element: Atomic # 1 Polarization: 0.16 SS G_CDS: -3.74 Total: -3.58 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: -1.00 Total: 1.67 kcal Atomic # 7 Polarization: -39.96 SS G_CDS: 0.21 Total: -39.75 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: -0.21 Total: -19.19 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -1.50 Total: -2.20 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -34.67 -6.60 -41.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043565345.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.465 kcal (2) G-P(sol) polarization free energy of solvation -34.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds