Wall clock time and date at job start Tue Mar 31 2020 05:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.46923 * 2 1 4 4 C 1.36918 * 119.99805 * 278.13425 * 3 2 1 5 5 H 1.07999 * 119.99781 * 232.15787 * 4 3 2 6 6 C 1.39019 * 119.99816 * 52.16260 * 4 3 2 7 7 N 1.31386 * 120.00142 * 39.68860 * 6 4 3 8 8 Si 1.86803 * 119.99877 * 219.69389 * 6 4 3 9 9 H 1.48504 * 109.46846 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47136 * 119.99895 * 8 6 4 11 11 H 1.48497 * 109.46881 * 240.00128 * 8 6 4 12 12 C 1.34770 * 120.00078 * 98.13693 * 3 2 1 13 13 O 1.21642 * 119.99991 * 185.78154 * 12 3 2 14 14 C 1.47369 * 120.00154 * 5.77813 * 12 3 2 15 15 C 1.39797 * 120.18492 * 312.40110 * 14 12 3 16 16 C 1.37718 * 119.91738 * 179.97438 * 15 14 12 17 17 C 1.38711 * 120.29039 * 0.02562 * 16 15 14 18 18 Cl 1.73600 * 119.81295 * 180.02562 * 17 16 15 19 19 C 1.38229 * 120.37260 * 359.73857 * 17 16 15 20 20 C 1.38615 * 120.07643 * 0.51546 * 19 17 16 21 21 O 1.35669 * 120.14419 * 179.76643 * 20 19 17 22 22 C 1.42897 * 116.99917 * 359.72167 * 21 20 19 23 23 H 1.08998 * 109.46822 * 200.30486 * 1 2 3 24 24 H 1.09003 * 109.47226 * 320.30480 * 1 2 3 25 25 H 1.08992 * 109.47159 * 80.30460 * 1 2 3 26 26 H 1.08991 * 109.47130 * 239.99914 * 2 1 3 27 27 H 1.09002 * 109.47261 * 119.99427 * 2 1 3 28 28 H 0.96999 * 120.00104 * 179.97438 * 7 6 4 29 29 H 1.07999 * 120.04007 * 0.02562 * 15 14 12 30 30 H 1.08000 * 119.85388 * 180.02562 * 16 15 14 31 31 H 1.08000 * 119.96228 * 180.26054 * 19 17 16 32 32 H 1.08994 * 109.46855 * 179.97438 * 22 21 20 33 33 H 1.09001 * 109.46839 * 59.99927 * 22 21 20 34 34 H 1.08996 * 109.47040 * 300.00274 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.0882 2.0826 -1.1738 5 1 3.0091 2.5705 -1.4573 6 6 0.9739 2.1667 -2.0007 7 7 -0.2217 2.3213 -1.4783 8 14 1.1763 2.0598 -3.8547 9 1 2.6136 1.8880 -4.1865 10 1 0.4065 0.8995 -4.3706 11 1 0.6700 3.3076 -4.4806 12 6 2.3986 1.9615 1.1554 13 8 2.7038 3.1389 1.1730 14 6 2.4447 1.1697 2.3974 15 6 1.3673 0.3516 2.7498 16 6 1.4165 -0.3864 3.9115 17 6 2.5308 -0.3216 4.7350 18 17 2.5799 -1.2577 6.1962 19 6 3.6049 0.4797 4.3957 20 6 3.5695 1.2330 3.2327 21 8 4.6210 2.0235 2.9008 22 6 5.7318 2.0368 3.7996 23 1 -0.3633 -0.9638 0.3566 24 1 -0.3634 0.7908 0.6564 25 1 -0.3633 0.1731 -1.0129 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5137 0.8900 28 1 -0.9992 2.3804 -2.0553 29 1 0.4979 0.2977 2.1114 30 1 0.5837 -1.0185 4.1826 31 1 4.4709 0.5219 5.0396 32 1 6.5012 2.7070 3.4164 33 1 6.1391 1.0297 3.8887 34 1 5.4024 2.3834 4.7791 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045049509.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:25 Heat of formation + Delta-G solvation = -30.986110 kcal Electronic energy + Delta-G solvation = -20475.664483 eV Core-core repulsion = 17207.977929 eV Total energy + Delta-G solvation = -3267.686555 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.23181 -38.24642 -37.35064 -36.09354 -34.91830 -32.17929 -30.62672 -30.11811 -29.41855 -27.22219 -25.17308 -22.99410 -22.17346 -22.02906 -19.58023 -17.90041 -16.93341 -16.30316 -16.19701 -15.60848 -15.14721 -14.84780 -14.44900 -14.31755 -13.78433 -13.32983 -13.13640 -12.98713 -12.64201 -12.10848 -11.98652 -11.71970 -11.60996 -11.45500 -11.16293 -11.08101 -10.96182 -10.85512 -10.69581 -10.36542 -10.31628 -10.07428 -8.74498 -8.63249 -8.24828 -7.98137 -7.31478 -6.37795 -3.95100 1.12637 1.49833 2.09313 3.15557 3.29356 3.36412 3.43739 3.57644 4.17882 4.24131 4.72941 4.87846 4.91465 5.06985 5.16542 5.22335 5.35782 5.53636 5.54775 5.72925 5.78947 5.93222 6.19181 6.28036 6.32040 6.40207 6.50821 6.57752 6.77337 6.92525 7.38223 7.53029 7.62200 8.44631 8.58509 9.26693 9.38270 10.11842 10.61382 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.024634 B = 0.005351 C = 0.004617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.390219 B = 5231.084162 C = 6063.644912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.101 3.899 3 N -0.435 5.435 4 C -0.344 4.344 5 H 0.084 0.916 6 C 0.068 3.932 7 N -0.818 5.818 8 Si 0.888 3.112 9 H -0.265 1.265 10 H -0.279 1.279 11 H -0.282 1.282 12 C 0.509 3.491 13 O -0.552 6.552 14 C -0.128 4.128 15 C -0.051 4.051 16 C -0.157 4.157 17 C 0.009 3.991 18 Cl -0.078 7.078 19 C -0.214 4.214 20 C 0.175 3.825 21 O -0.285 6.285 22 C 0.023 3.977 23 H 0.032 0.968 24 H 0.064 0.936 25 H 0.071 0.929 26 H 0.062 0.938 27 H 0.057 0.943 28 H 0.266 0.734 29 H 0.156 0.844 30 H 0.135 0.865 31 H 0.138 0.862 32 H 0.101 0.899 33 H 0.053 0.947 34 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.288 -8.615 10.696 14.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.023 4.023 3 N -0.156 5.156 4 C -0.470 4.470 5 H 0.102 0.898 6 C -0.142 4.142 7 N -0.450 5.450 8 Si 0.713 3.287 9 H -0.189 1.189 10 H -0.205 1.205 11 H -0.208 1.208 12 C 0.297 3.703 13 O -0.433 6.433 14 C -0.133 4.133 15 C -0.070 4.070 16 C -0.176 4.176 17 C -0.018 4.018 18 Cl -0.049 7.049 19 C -0.234 4.234 20 C 0.127 3.873 21 O -0.197 6.197 22 C -0.072 4.072 23 H 0.051 0.949 24 H 0.082 0.918 25 H 0.090 0.910 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.173 0.827 30 H 0.153 0.847 31 H 0.155 0.845 32 H 0.119 0.881 33 H 0.072 0.928 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.281 -7.937 10.598 13.916 hybrid contribution -0.009 -0.330 -0.446 0.554 sum 4.272 -8.267 10.153 13.772 Atomic orbital electron populations 1.22292 0.96160 0.98717 1.04246 1.21727 0.94720 0.85307 1.00522 1.43319 1.57415 1.09651 1.05209 1.18954 0.97430 1.35989 0.94657 0.89822 1.25378 0.94713 0.94138 1.00020 1.70385 0.99582 1.38316 1.36737 0.86560 0.79254 0.77977 0.84936 1.18899 1.20472 1.20846 1.18164 0.83257 0.86574 0.82308 1.90652 1.52195 1.15515 1.84903 1.20098 0.93346 1.01181 0.98643 1.21703 0.98116 0.91969 0.95211 1.20855 0.97962 1.03501 0.95297 1.20672 0.95993 0.96043 0.89053 1.98348 1.98564 1.72058 1.35966 1.20919 1.00580 1.02756 0.99110 1.18894 0.87674 0.89205 0.91532 1.86323 1.24872 1.61068 1.47399 1.23114 0.87973 1.02186 0.93918 0.94926 0.91757 0.90990 0.91935 0.92472 0.92430 0.82691 0.84719 0.84470 0.88084 0.92810 0.92699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.08 7.22 37.16 0.27 -2.82 16 2 C 0.10 2.10 5.42 -4.04 -0.02 2.08 16 3 N -0.44 -11.08 2.53 -116.05 -0.29 -11.38 16 4 C -0.34 -9.57 8.45 -14.99 -0.13 -9.70 16 5 H 0.08 2.46 8.05 -52.49 -0.42 2.04 16 6 C 0.07 1.79 4.38 -17.45 -0.08 1.71 16 7 N -0.82 -21.77 10.98 55.50 0.61 -21.16 16 8 Si 0.89 19.80 29.69 -169.99 -5.05 14.76 16 9 H -0.26 -5.91 7.11 56.52 0.40 -5.51 16 10 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 12 C 0.51 13.17 6.93 -12.55 -0.09 13.08 16 13 O -0.55 -16.57 16.44 -5.47 -0.09 -16.66 16 14 C -0.13 -2.66 5.02 -104.84 -0.53 -3.19 16 15 C -0.05 -0.89 7.43 -39.19 -0.29 -1.18 16 16 C -0.16 -2.27 9.80 -39.60 -0.39 -2.66 16 17 C 0.01 0.13 6.32 -39.41 -0.25 -0.12 16 18 Cl -0.08 -0.93 28.94 -51.86 -1.50 -2.43 16 19 C -0.21 -3.17 8.80 -39.45 -0.35 -3.52 16 20 C 0.17 3.23 6.67 -38.69 -0.26 2.97 16 21 O -0.29 -5.37 9.50 -29.42 -0.28 -5.65 16 22 C 0.02 0.29 9.81 101.05 0.99 1.28 16 23 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.06 1.39 6.79 -51.93 -0.35 1.04 16 25 H 0.07 1.57 6.21 -51.93 -0.32 1.25 16 26 H 0.06 1.26 8.10 -51.93 -0.42 0.84 16 27 H 0.06 1.05 5.14 -51.93 -0.27 0.78 16 28 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 29 H 0.16 2.69 4.20 -52.49 -0.22 2.47 16 30 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 31 H 0.14 1.66 6.30 -52.49 -0.33 1.33 16 32 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.05 0.55 7.65 -51.93 -0.40 0.15 16 34 H 0.05 0.58 7.67 -51.93 -0.40 0.18 16 LS Contribution 298.44 15.07 4.50 4.50 Total: -1.00 -32.23 298.44 -6.75 -38.98 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -3.54 Total: 1.09 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: -1.11 Total: -2.06 kcal Atomic # 7 Polarization: -32.85 SS G_CDS: 0.32 Total: -32.53 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: -0.37 Total: -22.31 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.05 Total: 14.76 kcal Atomic # 17 Polarization: -0.93 SS G_CDS: -1.50 Total: -2.43 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -32.23 -6.75 -38.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049509.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.997 kcal (2) G-P(sol) polarization free energy of solvation -32.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds