Wall clock time and date at job start Tue Mar 31 2020 05:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46501 * 109.47052 * 2 1 4 4 C 1.37095 * 120.00315 * 264.78017 * 3 2 1 5 5 H 1.07997 * 119.99704 * 146.16526 * 4 3 2 6 6 C 1.38946 * 120.00067 * 326.17360 * 4 3 2 7 7 N 1.31413 * 120.00327 * 337.70412 * 6 4 3 8 8 Si 1.86803 * 119.99863 * 157.70739 * 6 4 3 9 9 H 1.48499 * 109.47297 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47278 * 119.99725 * 8 6 4 11 11 H 1.48500 * 109.47385 * 239.99589 * 8 6 4 12 12 C 1.34779 * 119.99544 * 84.78884 * 3 2 1 13 13 O 1.21290 * 119.99878 * 180.02562 * 12 3 2 14 14 C 1.50699 * 120.00144 * 0.26892 * 12 3 2 15 15 O 1.42903 * 109.47192 * 179.72737 * 14 12 3 16 16 C 1.35897 * 116.99699 * 180.02562 * 15 14 12 17 17 C 1.38763 * 120.05270 * 359.72018 * 16 15 14 18 18 C 1.38136 * 119.96894 * 179.74779 * 17 16 15 19 19 C 1.38263 * 120.06881 * 0.55691 * 18 17 16 20 20 C 1.38365 * 120.09700 * 359.69726 * 19 18 17 21 21 Cl 1.73602 * 119.98653 * 180.02562 * 20 19 18 22 22 C 1.38285 * 120.03010 * 0.02562 * 20 19 18 23 23 H 1.09008 * 109.46960 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47252 * 299.99413 * 1 2 3 25 25 H 1.08999 * 109.47321 * 59.99793 * 1 2 3 26 26 H 1.09006 * 109.46940 * 240.00754 * 2 1 3 27 27 H 1.08994 * 109.47748 * 120.00789 * 2 1 3 28 28 H 0.97001 * 120.00186 * 180.02562 * 7 6 4 29 29 H 1.09002 * 109.47622 * 299.73157 * 14 12 3 30 30 H 1.09006 * 109.46958 * 59.72778 * 14 12 3 31 31 H 1.07992 * 120.01269 * 0.03147 * 17 16 15 32 32 H 1.07995 * 119.96509 * 180.25487 * 18 17 16 33 33 H 1.07999 * 119.95421 * 179.72330 * 19 18 17 34 34 H 1.08003 * 120.03166 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3486 1.9916 -1.1823 5 1 2.1807 3.0509 -1.3085 6 6 2.8993 1.2472 -2.2183 7 7 3.5035 0.1090 -1.9607 8 14 2.7808 1.8644 -3.9774 9 1 2.0569 3.1608 -3.9995 10 1 4.1466 2.0502 -4.5299 11 1 2.0442 0.8727 -4.8015 12 6 2.1429 2.0518 1.1624 13 8 2.5467 3.1955 1.1625 14 6 1.7857 1.3789 2.4626 15 8 2.0071 2.2855 3.5448 16 6 1.7324 1.8315 4.7960 17 6 1.2540 0.5417 4.9777 18 6 0.9803 0.0803 6.2507 19 6 1.1717 0.9061 7.3429 20 6 1.6436 2.1945 7.1645 21 17 1.8835 3.2287 8.5380 22 6 1.9244 2.6587 5.8925 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.8933 -0.5137 -0.8901 27 1 1.8934 -0.5139 0.8898 28 1 3.8882 -0.4105 -2.6839 29 1 0.7362 1.0852 2.4436 30 1 2.4081 0.4941 2.5968 31 1 1.1001 -0.1025 4.1248 32 1 0.6119 -0.9249 6.3924 33 1 0.9529 0.5449 8.3369 34 1 2.2931 3.6642 5.7532 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050164686.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:58 Heat of formation + Delta-G solvation = -46.365584 kcal Electronic energy + Delta-G solvation = -19536.476597 eV Core-core repulsion = 16268.123138 eV Total energy + Delta-G solvation = -3268.353459 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.19657 -38.65261 -37.38101 -36.29878 -35.02878 -32.20646 -31.09625 -30.04175 -29.60070 -28.03854 -24.78763 -22.90246 -22.51196 -22.05839 -19.22660 -18.38706 -16.90050 -16.22918 -16.12893 -15.92581 -15.68890 -15.01067 -14.66505 -14.24455 -13.86330 -13.76423 -13.32675 -13.09743 -12.97999 -12.43081 -11.95733 -11.94302 -11.88541 -11.48462 -11.32055 -11.15635 -11.07994 -10.90941 -10.82919 -10.39873 -10.37127 -10.19268 -9.06406 -8.95646 -8.51818 -8.26064 -7.62246 -6.43559 -4.04905 1.03148 1.28062 1.92629 3.09783 3.16640 3.23696 3.32977 3.55189 3.72083 4.12043 4.64493 4.77835 4.90852 4.96215 4.99134 5.12541 5.31987 5.36483 5.44834 5.57329 5.72935 5.81666 6.05885 6.08323 6.18301 6.19252 6.24696 6.35597 6.46889 6.76193 7.13331 7.43616 7.51166 8.12311 8.39609 9.06687 9.26723 9.85121 10.60342 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.037488 B = 0.003447 C = 0.003254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.735619 B = 8121.191469 C = 8602.968319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.091 3.909 3 N -0.434 5.434 4 C -0.307 4.307 5 H 0.096 0.904 6 C 0.036 3.964 7 N -0.868 5.868 8 Si 0.920 3.080 9 H -0.266 1.266 10 H -0.281 1.281 11 H -0.279 1.279 12 C 0.456 3.544 13 O -0.560 6.560 14 C 0.046 3.954 15 O -0.282 6.282 16 C 0.153 3.847 17 C -0.210 4.210 18 C -0.066 4.066 19 C -0.159 4.159 20 C 0.005 3.995 21 Cl -0.069 7.069 22 C -0.149 4.149 23 H 0.053 0.947 24 H 0.040 0.960 25 H 0.060 0.940 26 H 0.118 0.882 27 H 0.046 0.954 28 H 0.269 0.731 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.136 0.864 32 H 0.134 0.866 33 H 0.132 0.868 34 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.268 -4.373 14.000 15.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.033 4.033 3 N -0.155 5.155 4 C -0.434 4.434 5 H 0.113 0.887 6 C -0.168 4.168 7 N -0.506 5.506 8 Si 0.747 3.253 9 H -0.191 1.191 10 H -0.207 1.207 11 H -0.205 1.205 12 C 0.243 3.757 13 O -0.442 6.442 14 C -0.032 4.032 15 O -0.193 6.193 16 C 0.106 3.894 17 C -0.228 4.228 18 C -0.084 4.084 19 C -0.178 4.178 20 C -0.022 4.022 21 Cl -0.040 7.040 22 C -0.168 4.168 23 H 0.072 0.928 24 H 0.059 0.941 25 H 0.079 0.921 26 H 0.136 0.864 27 H 0.065 0.935 28 H 0.079 0.921 29 H 0.097 0.903 30 H 0.100 0.900 31 H 0.154 0.846 32 H 0.151 0.849 33 H 0.150 0.850 34 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -5.867 -3.655 13.922 15.543 hybrid contribution -0.070 -0.170 -0.726 0.749 sum -5.936 -3.824 13.196 14.967 Atomic orbital electron populations 1.22231 0.97951 1.00592 1.01676 1.21687 0.91927 0.85314 1.04421 1.43452 1.55844 1.11918 1.04272 1.19541 1.40079 0.95730 0.88082 0.88670 1.25362 0.94261 0.96474 1.00714 1.69918 1.32382 1.15258 1.33020 0.85964 0.78243 0.79195 0.81930 1.19055 1.20663 1.20503 1.19761 0.83668 0.88439 0.83849 1.90573 1.49156 1.18246 1.86207 1.22826 1.01501 0.92668 0.86235 1.86227 1.80805 1.40709 1.11535 1.18965 0.93077 0.91968 0.85392 1.21468 1.06348 0.95929 0.99096 1.20868 0.96988 0.99343 0.91224 1.20881 1.04419 0.92523 0.99962 1.20527 1.01813 0.92069 0.87771 1.98366 1.95440 1.67451 1.42778 1.20231 1.06323 1.01508 0.88731 0.92787 0.94061 0.92081 0.86422 0.93534 0.92098 0.90313 0.90001 0.84632 0.84853 0.85047 0.83982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.77 10.15 37.16 0.38 -2.39 16 2 C 0.09 1.84 5.44 -4.04 -0.02 1.82 16 3 N -0.43 -10.68 2.56 -114.82 -0.29 -10.97 16 4 C -0.31 -8.32 8.98 -14.94 -0.13 -8.45 16 5 H 0.10 2.72 7.70 -52.49 -0.40 2.32 16 6 C 0.04 0.93 4.92 -17.47 -0.09 0.84 16 7 N -0.87 -22.52 11.33 55.50 0.63 -21.89 16 8 Si 0.92 20.00 29.61 -169.99 -5.03 14.96 16 9 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 10 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 11 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 12 C 0.46 11.18 7.67 -10.99 -0.08 11.09 16 13 O -0.56 -16.11 16.32 -14.36 -0.23 -16.35 16 14 C 0.05 0.86 3.83 36.00 0.14 0.99 16 15 O -0.28 -5.43 9.67 -39.32 -0.38 -5.81 16 16 C 0.15 2.39 6.69 -39.22 -0.26 2.13 16 17 C -0.21 -2.67 9.04 -39.42 -0.36 -3.03 16 18 C -0.07 -0.69 10.04 -39.61 -0.40 -1.09 16 19 C -0.16 -1.71 9.83 -39.53 -0.39 -2.10 16 20 C 0.00 0.06 6.32 -39.52 -0.25 -0.19 16 21 Cl -0.07 -0.77 28.95 -51.86 -1.50 -2.27 16 22 C -0.15 -2.13 9.77 -39.40 -0.38 -2.52 16 23 H 0.05 0.74 8.14 -51.92 -0.42 0.32 16 24 H 0.04 0.64 6.62 -51.93 -0.34 0.29 16 25 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 26 H 0.12 2.67 5.34 -51.93 -0.28 2.39 16 27 H 0.05 0.84 6.65 -51.93 -0.35 0.49 16 28 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 29 H 0.08 1.25 6.07 -51.93 -0.32 0.93 16 30 H 0.08 1.36 6.94 -51.93 -0.36 1.00 16 31 H 0.14 1.54 6.30 -52.49 -0.33 1.21 16 32 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 33 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 34 H 0.14 2.02 8.06 -52.48 -0.42 1.59 16 LS Contribution 306.80 15.07 4.62 4.62 Total: -1.00 -30.85 306.80 -7.67 -38.51 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -3.63 Total: 2.08 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: -1.85 Total: -2.88 kcal Atomic # 7 Polarization: -33.19 SS G_CDS: 0.34 Total: -32.86 kcal Atomic # 8 Polarization: -21.55 SS G_CDS: -0.61 Total: -22.16 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.03 Total: 14.96 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -1.50 Total: -2.27 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.85 -7.67 -38.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050164686.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.851 kcal (2) G-P(sol) polarization free energy of solvation -30.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds