Wall clock time and date at job start Tue Mar 31 2020 05:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35668 * 117.00167 * 2 1 4 4 C 1.38695 * 120.13737 * 359.72026 * 3 2 1 5 5 C 1.38056 * 120.10148 * 179.77044 * 4 3 2 6 6 C 1.38643 * 120.37314 * 0.50964 * 5 4 3 7 7 Cl 1.73607 * 119.86269 * 179.76688 * 6 5 4 8 8 C 1.37888 * 120.27466 * 359.74621 * 6 5 4 9 9 C 1.39709 * 119.89522 * 359.97438 * 8 6 5 10 10 C 1.47533 * 120.18639 * 180.02562 * 9 8 6 11 11 O 1.21592 * 120.00063 * 179.97438 * 10 9 8 12 12 N 1.34780 * 120.00139 * 359.97438 * 10 9 8 13 13 C 1.46500 * 120.00038 * 179.97438 * 12 10 9 14 14 H 1.08997 * 109.47525 * 325.00944 * 13 12 10 15 15 C 1.53001 * 109.46573 * 85.00443 * 13 12 10 16 16 C 1.50697 * 109.47306 * 205.00124 * 13 12 10 17 17 H 1.08003 * 120.00236 * 0.02562 * 16 13 12 18 18 C 1.37877 * 120.00346 * 180.02562 * 16 13 12 19 19 N 1.31514 * 120.00051 * 180.02562 * 18 16 13 20 20 Si 1.86806 * 119.99745 * 359.97438 * 18 16 13 21 21 H 1.48501 * 109.46820 * 90.00455 * 20 18 16 22 22 H 1.48495 * 109.46868 * 210.00426 * 20 18 16 23 23 H 1.48500 * 109.47198 * 330.00833 * 20 18 16 24 24 H 1.09001 * 109.47103 * 300.00520 * 1 2 3 25 25 H 1.09004 * 109.47054 * 60.00024 * 1 2 3 26 26 H 1.09000 * 109.47187 * 180.02562 * 1 2 3 27 27 H 1.07999 * 119.95115 * 0.02562 * 4 3 2 28 28 H 1.07999 * 119.81266 * 180.23451 * 5 4 3 29 29 H 1.08007 * 120.05113 * 180.02562 * 8 6 5 30 30 H 0.97000 * 119.99660 * 0.02562 * 12 10 9 31 31 H 1.08994 * 109.47618 * 299.99793 * 15 13 12 32 32 H 1.08999 * 109.47307 * 60.00031 * 15 13 12 33 33 H 1.09004 * 109.47266 * 179.97438 * 15 13 12 34 34 H 0.97003 * 119.99897 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 1.2925 2.3738 -0.0059 5 6 1.9200 3.6035 -0.0011 6 6 3.3041 3.6842 -0.0010 7 17 4.0794 5.2375 -0.0011 8 6 4.0674 2.5358 -0.0005 9 6 3.4441 1.2855 0.0005 10 6 4.2546 0.0527 0.0017 11 8 3.7086 -1.0338 0.0030 12 7 5.6001 0.1307 0.0012 13 6 6.4048 -1.0935 0.0029 14 1 5.9011 -1.8587 0.5935 15 6 6.5796 -1.5908 -1.4335 16 6 7.7569 -0.8050 0.6025 17 1 7.9931 0.1905 0.9483 18 6 8.6926 -1.8120 0.7099 19 7 9.8724 -1.5603 1.2337 20 14 8.2839 -3.5342 0.1126 21 1 8.6693 -3.6672 -1.3154 22 1 9.0320 -4.5293 0.9220 23 1 6.8256 -3.7749 0.2561 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.2139 2.3190 -0.0100 28 1 1.3294 4.5077 -0.0018 29 1 5.1454 2.6029 -0.0001 30 1 6.0356 0.9974 0.0005 31 1 5.6017 -1.7994 -1.8673 32 1 7.0833 -0.8256 -2.0242 33 1 7.1787 -2.5014 -1.4324 34 1 10.5305 -2.2689 1.3095 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050336503.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:21 Heat of formation + Delta-G solvation = -47.702221 kcal Electronic energy + Delta-G solvation = -19777.071949 eV Core-core repulsion = 16508.660529 eV Total energy + Delta-G solvation = -3268.411420 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.56465 -38.61131 -37.71815 -36.22161 -34.94210 -32.54497 -31.63130 -30.07392 -29.54152 -27.36134 -25.18195 -24.15878 -22.35580 -21.21054 -19.65195 -18.63391 -17.46036 -16.57883 -16.30686 -15.90435 -15.45663 -15.18485 -14.84369 -14.28820 -14.12010 -13.85041 -13.34175 -13.06824 -12.87407 -12.65622 -12.20153 -12.06819 -12.01842 -11.75761 -11.44792 -11.23459 -11.07444 -10.79800 -10.78279 -10.15553 -9.68202 -9.29789 -9.19615 -9.15622 -8.72954 -8.30859 -8.07035 -6.18251 -4.20663 0.72503 1.04589 2.01833 3.02541 3.14090 3.26064 3.37884 3.43082 3.85239 3.95024 4.34484 4.47553 4.57136 4.81778 4.99548 5.00895 5.12929 5.16766 5.33298 5.35492 5.55901 5.66621 5.93753 5.97387 6.29573 6.35442 6.42098 6.59511 6.89211 7.17951 7.26455 7.31642 7.54597 8.17707 8.54260 8.78704 8.95529 9.42608 10.93889 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.017935 B = 0.005048 C = 0.004062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.796232 B = 5544.935174 C = 6891.651645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.273 6.273 3 C 0.186 3.814 4 C -0.211 4.211 5 C -0.051 4.051 6 C -0.083 4.083 7 Cl -0.069 7.069 8 C -0.038 4.038 9 C -0.148 4.148 10 C 0.548 3.452 11 O -0.530 6.530 12 N -0.698 5.698 13 C 0.238 3.762 14 H 0.050 0.950 15 C -0.161 4.161 16 C -0.534 4.534 17 H 0.080 0.920 18 C 0.079 3.921 19 N -0.893 5.893 20 Si 0.885 3.115 21 H -0.276 1.276 22 H -0.294 1.294 23 H -0.261 1.261 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.103 0.897 27 H 0.141 0.859 28 H 0.138 0.862 29 H 0.147 0.853 30 H 0.393 0.607 31 H 0.036 0.964 32 H 0.053 0.947 33 H 0.047 0.953 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.038 10.795 -3.562 21.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.183 6.183 3 C 0.137 3.863 4 C -0.230 4.230 5 C -0.070 4.070 6 C -0.110 4.110 7 Cl -0.040 7.040 8 C -0.057 4.057 9 C -0.152 4.152 10 C 0.333 3.667 11 O -0.408 6.408 12 N -0.347 5.347 13 C 0.134 3.866 14 H 0.068 0.932 15 C -0.219 4.219 16 C -0.572 4.572 17 H 0.098 0.902 18 C -0.125 4.125 19 N -0.530 5.530 20 Si 0.715 3.285 21 H -0.203 1.203 22 H -0.222 1.222 23 H -0.186 1.186 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.121 0.879 27 H 0.159 0.841 28 H 0.155 0.845 29 H 0.165 0.835 30 H 0.227 0.773 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -18.065 9.833 -3.501 20.864 hybrid contribution 0.026 -0.096 -0.316 0.332 sum -18.039 9.737 -3.818 20.852 Atomic orbital electron populations 1.23191 0.78888 1.04449 1.01049 1.86457 1.20569 1.25015 1.86260 1.19128 0.91080 0.84994 0.91135 1.21151 1.00475 0.91259 1.10142 1.20916 0.92333 0.98029 0.95689 1.20594 0.92840 0.86766 1.10759 1.98369 1.81178 1.27220 1.97267 1.21175 1.00727 0.89341 0.94500 1.19620 0.91068 0.94295 1.10250 1.17836 0.82814 0.87867 0.78164 1.90783 1.71748 1.28273 1.50043 1.46132 1.04767 1.11241 1.72543 1.19117 0.91138 0.83304 0.92993 0.93214 1.22451 0.99349 1.00455 0.99683 1.21037 0.95795 0.98861 1.41542 0.90164 1.24822 0.94580 0.98778 0.94314 1.69870 1.05355 1.33626 1.44100 0.86880 0.79283 0.84181 0.78178 1.20303 1.22184 1.18597 0.92580 0.92617 0.87883 0.84093 0.84465 0.83538 0.77286 0.94457 0.92792 0.93437 0.92306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 101.05 0.99 1.17 16 2 O -0.27 -4.13 8.57 -40.59 -0.35 -4.48 16 3 C 0.19 2.66 6.70 -38.71 -0.26 2.40 16 4 C -0.21 -2.22 9.03 -39.48 -0.36 -2.58 16 5 C -0.05 -0.51 9.81 -39.50 -0.39 -0.90 16 6 C -0.08 -0.97 6.31 -39.56 -0.25 -1.22 16 7 Cl -0.07 -0.75 28.94 -51.86 -1.50 -2.25 16 8 C -0.04 -0.51 9.31 -39.16 -0.36 -0.88 16 9 C -0.15 -2.38 5.89 -104.85 -0.62 -3.00 16 10 C 0.55 11.10 7.73 -12.47 -0.10 11.01 16 11 O -0.53 -12.52 14.82 -16.60 -0.25 -12.76 16 12 N -0.70 -14.41 5.02 -55.98 -0.28 -14.69 16 13 C 0.24 5.79 2.15 -69.08 -0.15 5.64 16 14 H 0.05 1.33 6.63 -51.93 -0.34 0.99 16 15 C -0.16 -3.67 8.96 37.16 0.33 -3.34 16 16 C -0.53 -14.58 9.31 -34.44 -0.32 -14.90 16 17 H 0.08 2.29 7.98 -52.48 -0.42 1.87 16 18 C 0.08 2.22 5.45 -17.82 -0.10 2.12 16 19 N -0.89 -26.57 13.96 55.43 0.77 -25.80 16 20 Si 0.89 21.95 24.37 -169.99 -4.14 17.81 16 21 H -0.28 -6.62 6.87 56.52 0.39 -6.24 16 22 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 23 H -0.26 -6.46 6.53 56.52 0.37 -6.09 16 24 H 0.06 0.41 7.67 -51.93 -0.40 0.01 16 25 H 0.06 0.40 7.65 -51.93 -0.40 0.00 16 26 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.14 1.04 6.30 -52.49 -0.33 0.71 16 28 H 0.14 1.00 8.06 -52.49 -0.42 0.57 16 29 H 0.15 1.85 6.40 -52.48 -0.34 1.52 16 30 H 0.39 7.12 6.57 -40.82 -0.27 6.85 16 31 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.05 1.11 3.27 -51.93 -0.17 0.94 16 34 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 299.92 15.07 4.52 4.52 Total: -1.00 -32.88 299.92 -6.33 -39.21 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -3.54 Total: 2.91 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: -1.57 Total: -4.47 kcal Atomic # 7 Polarization: -40.98 SS G_CDS: 0.49 Total: -40.49 kcal Atomic # 8 Polarization: -16.65 SS G_CDS: -0.59 Total: -17.24 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.14 Total: 17.81 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -1.50 Total: -2.25 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -32.88 -6.33 -39.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050336503.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.491 kcal (2) G-P(sol) polarization free energy of solvation -32.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds