Wall clock time and date at job start Tue Mar 31 2020 05:23:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35668 * 117.00167 * 2 1 4 4 C 1.38702 * 120.13764 * 359.97438 * 3 2 1 5 5 C 1.38050 * 120.09906 * 179.97438 * 4 3 2 6 6 C 1.38643 * 120.37813 * 359.97438 * 5 4 3 7 7 Cl 1.73597 * 119.86170 * 179.97438 * 6 5 4 8 8 C 1.37888 * 120.27324 * 0.03040 * 6 5 4 9 9 C 1.39714 * 119.89814 * 359.69303 * 8 6 5 10 10 C 1.47530 * 120.19083 * 180.32380 * 9 8 6 11 11 O 1.21593 * 120.00164 * 180.22726 * 10 9 8 12 12 N 1.34777 * 119.99828 * 0.23140 * 10 9 8 13 13 C 1.46501 * 119.99618 * 179.97438 * 12 10 9 14 14 H 1.09000 * 109.47269 * 35.01037 * 13 12 10 15 15 C 1.52996 * 109.47483 * 274.99934 * 13 12 10 16 16 C 1.50711 * 109.46632 * 155.00205 * 13 12 10 17 17 H 1.08001 * 119.99742 * 359.97438 * 16 13 12 18 18 C 1.37878 * 119.99523 * 180.02562 * 16 13 12 19 19 N 1.31510 * 120.00443 * 0.02562 * 18 16 13 20 20 Si 1.86807 * 119.99491 * 179.97438 * 18 16 13 21 21 H 1.48502 * 109.47177 * 60.00022 * 20 18 16 22 22 H 1.48500 * 109.46768 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47233 * 299.99692 * 20 18 16 24 24 H 1.09001 * 109.47103 * 300.00520 * 1 2 3 25 25 H 1.09004 * 109.47054 * 60.00024 * 1 2 3 26 26 H 1.09000 * 109.47187 * 180.02562 * 1 2 3 27 27 H 1.08004 * 119.95092 * 0.02562 * 4 3 2 28 28 H 1.08003 * 119.81128 * 180.02562 * 5 4 3 29 29 H 1.08007 * 120.05062 * 179.97438 * 8 6 5 30 30 H 0.96993 * 120.00095 * 0.02562 * 12 10 9 31 31 H 1.08993 * 109.46801 * 60.00452 * 15 13 12 32 32 H 1.09003 * 109.47045 * 180.02562 * 15 13 12 33 33 H 1.08999 * 109.47050 * 300.00205 * 15 13 12 34 34 H 0.96996 * 120.00060 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 1.2924 2.3739 -0.0005 5 6 1.9200 3.6035 0.0000 6 6 3.3041 3.6842 0.0016 7 17 4.0793 5.2375 0.0016 8 6 4.0674 2.5358 0.0021 9 6 3.4442 1.2854 0.0074 10 6 4.2546 0.0526 0.0151 11 8 3.7086 -1.0338 0.0155 12 7 5.6001 0.1307 0.0218 13 6 6.4047 -1.0935 0.0300 14 1 5.9040 -1.8614 -0.5596 15 6 6.5725 -1.5840 1.4695 16 6 7.7598 -0.8078 -0.5645 17 1 7.9976 0.1861 -0.9138 18 6 8.6956 -1.8156 -0.6633 19 7 8.4055 -3.0262 -0.2392 20 14 10.3750 -1.4617 -1.4008 21 1 11.0578 -0.4155 -0.5978 22 1 11.1907 -2.7025 -1.3923 23 1 10.2118 -0.9855 -2.7978 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.2138 2.3191 -0.0005 28 1 1.3294 4.5077 0.0000 29 1 5.1454 2.6029 0.0029 30 1 6.0356 0.9974 0.0218 31 1 5.5924 -1.7905 1.8994 32 1 7.1716 -2.4946 1.4755 33 1 7.0733 -0.8160 2.0589 34 1 9.0640 -3.7351 -0.3084 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050336507.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:24 Heat of formation + Delta-G solvation = -55.965877 kcal Electronic energy + Delta-G solvation = -19709.669556 eV Core-core repulsion = 16440.899797 eV Total energy + Delta-G solvation = -3268.769759 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.47811 -38.43407 -37.64848 -36.18050 -34.72252 -32.52794 -31.43633 -30.01075 -28.71910 -27.26315 -25.22630 -24.03770 -22.27508 -21.10760 -19.48290 -18.56504 -17.34911 -16.51308 -16.06681 -15.82816 -15.15490 -15.07963 -14.75550 -14.19681 -14.06228 -13.74914 -13.25332 -13.00220 -12.60718 -12.41241 -11.99868 -11.95923 -11.63892 -11.39054 -11.06395 -11.04049 -10.93060 -10.76328 -10.68771 -10.29346 -10.19830 -9.22821 -9.04725 -9.00402 -8.51589 -8.22755 -7.83767 -6.09047 -4.18290 0.79713 1.09972 2.04868 3.11641 3.21356 3.28414 3.33378 3.34781 4.00307 4.08783 4.38480 4.53285 4.64688 4.87583 5.05481 5.07096 5.20908 5.23437 5.41338 5.41728 5.63355 5.74266 6.00241 6.04692 6.36311 6.87068 7.01357 7.18830 7.28820 7.48962 7.60373 7.73012 7.95410 8.18191 8.68691 8.81472 9.15201 9.49068 10.96945 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.016850 B = 0.004882 C = 0.003923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.310365 B = 5734.121925 C = 7135.052140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.271 6.271 3 C 0.185 3.815 4 C -0.211 4.211 5 C -0.053 4.053 6 C -0.083 4.083 7 Cl -0.072 7.072 8 C -0.040 4.040 9 C -0.146 4.146 10 C 0.545 3.455 11 O -0.529 6.529 12 N -0.705 5.705 13 C 0.266 3.734 14 H 0.050 0.950 15 C -0.147 4.147 16 C -0.534 4.534 17 H 0.061 0.939 18 C 0.067 3.933 19 N -0.883 5.883 20 Si 0.902 3.098 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.276 1.276 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.103 0.897 27 H 0.141 0.859 28 H 0.137 0.863 29 H 0.146 0.854 30 H 0.386 0.614 31 H 0.015 0.985 32 H 0.090 0.910 33 H 0.026 0.974 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.087 13.501 1.138 19.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.182 6.182 3 C 0.136 3.864 4 C -0.230 4.230 5 C -0.072 4.072 6 C -0.110 4.110 7 Cl -0.043 7.043 8 C -0.059 4.059 9 C -0.150 4.150 10 C 0.329 3.671 11 O -0.407 6.407 12 N -0.353 5.353 13 C 0.164 3.836 14 H 0.068 0.932 15 C -0.205 4.205 16 C -0.572 4.572 17 H 0.079 0.921 18 C -0.136 4.136 19 N -0.521 5.521 20 Si 0.729 3.271 21 H -0.202 1.202 22 H -0.211 1.211 23 H -0.202 1.202 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.121 0.879 27 H 0.159 0.841 28 H 0.154 0.846 29 H 0.163 0.837 30 H 0.219 0.781 31 H 0.034 0.966 32 H 0.109 0.891 33 H 0.045 0.955 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.211 12.400 1.155 18.896 hybrid contribution 0.956 0.980 -0.368 1.418 sum -13.256 13.380 0.786 18.851 Atomic orbital electron populations 1.23187 0.78970 1.04446 1.00968 1.86473 1.20492 1.24974 1.86226 1.19152 0.91143 0.84977 0.91160 1.21150 1.00445 0.91278 1.10167 1.20891 0.92312 0.97991 0.95985 1.20585 0.92837 0.86626 1.10949 1.98362 1.81232 1.27399 1.97298 1.21156 1.00632 0.89359 0.94768 1.19749 0.91150 0.94517 1.09616 1.17818 0.83000 0.87701 0.78544 1.90788 1.71703 1.28202 1.49999 1.46479 1.04897 1.11705 1.72269 1.18761 0.89191 0.81579 0.94048 0.93199 1.22076 0.98520 1.02611 0.97342 1.21179 0.97797 0.96643 1.41620 0.92119 1.24876 0.98767 0.94842 0.95146 1.69892 1.35178 1.01184 1.45828 0.86509 0.83287 0.77631 0.79670 1.20154 1.21146 1.20175 0.92664 0.92643 0.87870 0.84140 0.84551 0.83681 0.78063 0.96570 0.89123 0.95462 0.92534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 101.05 0.99 1.18 16 2 O -0.27 -4.34 8.57 -40.59 -0.35 -4.69 16 3 C 0.18 2.78 6.70 -38.70 -0.26 2.52 16 4 C -0.21 -2.34 9.03 -39.48 -0.36 -2.70 16 5 C -0.05 -0.55 9.81 -39.50 -0.39 -0.94 16 6 C -0.08 -1.01 6.31 -39.56 -0.25 -1.26 16 7 Cl -0.07 -0.79 28.94 -51.86 -1.50 -2.29 16 8 C -0.04 -0.56 9.31 -39.16 -0.36 -0.92 16 9 C -0.15 -2.47 5.89 -104.85 -0.62 -3.08 16 10 C 0.54 11.67 7.73 -12.47 -0.10 11.57 16 11 O -0.53 -13.28 14.82 -16.60 -0.25 -13.53 16 12 N -0.70 -15.28 5.02 -55.97 -0.28 -15.56 16 13 C 0.27 6.90 2.56 -69.08 -0.18 6.73 16 14 H 0.05 1.49 7.58 -51.93 -0.39 1.10 16 15 C -0.15 -3.73 9.26 37.16 0.34 -3.38 16 16 C -0.53 -14.30 8.73 -34.43 -0.30 -14.60 16 17 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 18 C 0.07 1.81 5.30 -17.82 -0.09 1.72 16 19 N -0.88 -25.06 11.32 55.43 0.63 -24.44 16 20 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 21 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 22 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 25 H 0.05 0.43 7.66 -51.93 -0.40 0.04 16 26 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.14 1.11 6.30 -52.48 -0.33 0.78 16 28 H 0.14 1.05 8.06 -52.48 -0.42 0.62 16 29 H 0.15 1.89 6.41 -52.48 -0.34 1.55 16 30 H 0.39 7.23 6.57 -40.82 -0.27 6.96 16 31 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 33 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 306.74 15.07 4.62 4.62 Total: -1.00 -31.99 306.74 -7.38 -39.38 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -3.67 Total: 3.91 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: -1.57 Total: -3.16 kcal Atomic # 7 Polarization: -40.34 SS G_CDS: 0.35 Total: -40.00 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: -0.59 Total: -18.22 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -1.50 Total: -2.29 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.99 -7.38 -39.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050336507.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.588 kcal (2) G-P(sol) polarization free energy of solvation -31.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds