Wall clock time and date at job start Tue Mar 31 2020 05:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.47190 * 2 1 4 4 C 1.50693 * 109.47058 * 120.00237 * 2 1 3 5 5 H 1.08005 * 120.00291 * 114.36412 * 4 2 1 6 6 C 1.37881 * 120.00259 * 294.36743 * 4 2 1 7 7 N 1.31514 * 120.00212 * 156.61898 * 6 4 2 8 8 Si 1.86795 * 119.99775 * 336.88788 * 6 4 2 9 9 H 1.48501 * 109.47165 * 179.72704 * 8 6 4 10 10 H 1.48500 * 109.47318 * 299.72681 * 8 6 4 11 11 H 1.48500 * 109.47076 * 59.72783 * 8 6 4 12 12 N 1.46498 * 109.46908 * 240.00405 * 2 1 3 13 13 C 1.34776 * 119.99973 * 85.00105 * 12 2 1 14 14 O 1.21275 * 120.00093 * 0.02562 * 13 12 2 15 15 C 1.50701 * 119.99964 * 179.97438 * 13 12 2 16 16 O 1.42900 * 109.47192 * 180.02562 * 15 13 12 17 17 C 1.35921 * 116.99720 * 179.97438 * 16 15 13 18 18 C 1.38722 * 120.04660 * 359.72216 * 17 16 15 19 19 C 1.38146 * 119.95835 * 179.78790 * 18 17 16 20 20 C 1.38361 * 120.04011 * 0.46704 * 19 18 17 21 21 Cl 1.73599 * 119.95651 * 179.76607 * 20 19 18 22 22 C 1.38369 * 120.09007 * 359.78544 * 20 19 18 23 23 C 1.38144 * 120.03508 * 359.97438 * 22 20 19 24 24 H 1.09007 * 109.46955 * 53.09808 * 1 2 3 25 25 H 1.08994 * 109.47507 * 173.10064 * 1 2 3 26 26 H 1.09003 * 109.46967 * 293.10580 * 1 2 3 27 27 H 0.97003 * 119.99433 * 355.20223 * 7 6 4 28 28 H 0.96999 * 119.99673 * 264.99382 * 12 2 1 29 29 H 1.09007 * 109.46983 * 299.99861 * 15 13 12 30 30 H 1.08994 * 109.47412 * 59.99878 * 15 13 12 31 31 H 1.08004 * 120.01859 * 0.02562 * 18 17 16 32 32 H 1.07999 * 119.97795 * 180.23071 * 19 18 17 33 33 H 1.08000 * 119.98171 * 179.97438 * 22 20 19 34 34 H 1.08011 * 120.01717 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.5761 -1.6386 1.1339 6 6 1.7976 -0.1756 2.4794 7 7 1.8026 -0.9539 3.5395 8 14 1.4651 1.6531 2.6649 9 1 1.2392 1.9724 4.0975 10 1 2.6331 2.4218 2.1647 11 1 0.2588 2.0190 1.8800 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0181 -2.3571 14 8 1.8590 1.1587 -2.4114 15 6 2.6498 -0.7283 -3.5875 16 8 2.6984 0.1901 -4.6812 17 6 3.1339 -0.2938 -5.8744 18 6 3.5122 -1.6235 -5.9883 19 6 3.9504 -2.1145 -7.2029 20 6 4.0213 -1.2785 -8.3031 21 17 4.5781 -1.8963 -9.8269 22 6 3.6494 0.0495 -8.1903 23 6 3.2060 0.5429 -6.9785 24 1 -0.3633 0.6171 -0.8218 25 1 -0.3634 -1.0201 -0.1234 26 1 -0.3633 0.4033 0.9453 27 1 1.9020 -1.9133 3.4363 28 1 2.2490 -1.6317 -1.1527 29 1 3.6492 -1.1201 -3.3980 30 1 1.9777 -1.5505 -3.8327 31 1 3.4605 -2.2755 -5.1288 32 1 4.2414 -3.1507 -7.2928 33 1 3.7058 0.7007 -9.0501 34 1 2.9161 1.5797 -6.8907 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050337145.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:24 Heat of formation + Delta-G solvation = -60.410256 kcal Electronic energy + Delta-G solvation = -18931.102106 eV Core-core repulsion = 15662.139625 eV Total energy + Delta-G solvation = -3268.962481 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.53354 -39.08735 -37.70016 -36.40306 -35.01523 -32.59614 -31.57235 -30.59505 -29.78213 -27.66957 -24.90858 -23.31572 -22.55078 -21.04322 -19.73991 -18.63515 -17.97008 -16.80820 -16.69638 -16.38091 -15.84730 -15.16956 -14.79027 -14.28005 -13.95418 -13.85722 -13.42538 -13.39193 -12.81641 -12.72915 -12.47491 -12.33321 -12.02690 -11.66882 -11.58998 -11.42022 -11.04297 -10.90011 -10.54497 -10.17707 -9.89345 -9.45118 -9.36833 -9.21941 -8.40794 -8.36661 -8.32074 -6.66517 -4.28088 0.89470 0.93334 1.88321 2.67180 2.99494 3.31181 3.37131 3.42889 3.58179 3.98063 4.39128 4.40535 4.48763 4.73365 4.89480 5.00654 5.03733 5.05461 5.11824 5.21358 5.57875 5.66085 5.90943 5.94691 6.23605 6.31707 6.47631 6.59757 6.87505 7.03846 7.21376 7.28376 7.55968 8.17365 8.30736 8.59719 8.80950 9.37956 10.72150 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.049005 B = 0.002769 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.232584 B =10108.041124 C =10431.149085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.245 3.755 3 H 0.042 0.958 4 C -0.627 4.627 5 H 0.063 0.937 6 C 0.047 3.953 7 N -0.888 5.888 8 Si 1.033 2.967 9 H -0.282 1.282 10 H -0.280 1.280 11 H -0.273 1.273 12 N -0.697 5.697 13 C 0.504 3.496 14 O -0.533 6.533 15 C 0.038 3.962 16 O -0.282 6.282 17 C 0.142 3.858 18 C -0.201 4.201 19 C -0.068 4.068 20 C -0.079 4.079 21 Cl -0.077 7.077 22 C -0.069 4.069 23 C -0.139 4.139 24 H 0.030 0.970 25 H 0.044 0.956 26 H 0.060 0.940 27 H 0.271 0.729 28 H 0.394 0.606 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.139 0.861 32 H 0.136 0.864 33 H 0.140 0.860 34 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.731 -3.218 -22.344 22.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.143 3.857 3 H 0.060 0.940 4 C -0.665 4.665 5 H 0.081 0.919 6 C -0.161 4.161 7 N -0.519 5.519 8 Si 0.860 3.140 9 H -0.208 1.208 10 H -0.206 1.206 11 H -0.199 1.199 12 N -0.347 5.347 13 C 0.287 3.713 14 O -0.410 6.410 15 C -0.041 4.041 16 O -0.194 6.194 17 C 0.095 3.905 18 C -0.220 4.220 19 C -0.086 4.086 20 C -0.105 4.105 21 Cl -0.048 7.048 22 C -0.088 4.088 23 C -0.158 4.158 24 H 0.049 0.951 25 H 0.063 0.937 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.228 0.772 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.157 0.843 32 H 0.153 0.847 33 H 0.157 0.843 34 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 3.232 -1.041 -21.280 21.549 hybrid contribution 0.541 -2.162 -1.191 2.527 sum 3.772 -3.203 -22.470 23.009 Atomic orbital electron populations 1.22438 0.98724 1.00058 1.00353 1.19041 0.90635 0.94198 0.81868 0.94007 1.21986 1.42325 1.11259 0.90889 0.91872 1.25645 0.92883 1.05938 0.91674 1.70877 1.42745 1.06474 1.31852 0.84187 0.77849 0.75619 0.76370 1.20767 1.20579 1.19910 1.46191 1.65288 1.13837 1.09407 1.19883 0.79543 0.87734 0.84172 1.90704 1.49962 1.15609 1.84684 1.22685 1.02901 0.92558 0.85976 1.86221 1.79989 1.37462 1.15722 1.19210 0.93044 0.92190 0.86067 1.21286 1.06495 0.95097 0.99159 1.20827 0.97343 0.99768 0.90697 1.20768 1.07295 0.94662 0.87797 1.98359 1.88323 1.87625 1.30476 1.20856 0.96853 0.93491 0.97602 1.20436 1.04450 1.00780 0.90110 0.95109 0.93696 0.92073 0.91897 0.77245 0.89063 0.89149 0.84314 0.84655 0.84259 0.83925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.48 9.20 37.16 0.34 -3.13 16 2 C 0.25 5.74 2.16 -69.09 -0.15 5.59 16 3 H 0.04 1.07 6.15 -51.93 -0.32 0.75 16 4 C -0.63 -16.45 8.95 -34.44 -0.31 -16.76 16 5 H 0.06 1.71 7.96 -52.48 -0.42 1.30 16 6 C 0.05 1.28 5.19 -17.82 -0.09 1.19 16 7 N -0.89 -25.74 13.70 55.43 0.76 -24.98 16 8 Si 1.03 24.57 26.44 -169.99 -4.50 20.07 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.27 -6.15 6.14 56.52 0.35 -5.80 16 12 N -0.70 -13.32 5.07 -54.94 -0.28 -13.60 16 13 C 0.50 9.29 7.87 -10.98 -0.09 9.20 16 14 O -0.53 -12.17 16.16 -14.35 -0.23 -12.41 16 15 C 0.04 0.49 5.22 36.01 0.19 0.68 16 16 O -0.28 -4.15 9.67 -39.40 -0.38 -4.53 16 17 C 0.14 1.69 6.69 -39.22 -0.26 1.43 16 18 C -0.20 -1.98 9.04 -39.44 -0.36 -2.34 16 19 C -0.07 -0.61 9.82 -39.57 -0.39 -1.00 16 20 C -0.08 -0.74 6.32 -39.49 -0.25 -0.99 16 21 Cl -0.08 -0.67 28.95 -51.86 -1.50 -2.17 16 22 C -0.07 -0.64 9.82 -39.57 -0.39 -1.03 16 23 C -0.14 -1.48 9.99 -39.44 -0.39 -1.87 16 24 H 0.03 0.65 8.14 -51.92 -0.42 0.22 16 25 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 26 H 0.06 1.39 5.47 -51.93 -0.28 1.11 16 27 H 0.27 7.74 8.73 -40.82 -0.36 7.38 16 28 H 0.39 6.37 8.53 -40.82 -0.35 6.03 16 29 H 0.09 0.96 7.65 -51.92 -0.40 0.56 16 30 H 0.09 0.91 7.67 -51.93 -0.40 0.52 16 31 H 0.14 1.09 6.30 -52.48 -0.33 0.76 16 32 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 33 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 34 H 0.14 1.39 8.06 -52.48 -0.42 0.97 16 LS Contribution 309.54 15.07 4.66 4.66 Total: -1.00 -31.55 309.54 -7.43 -38.98 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -3.82 Total: 3.00 kcal Atomic # 6 Polarization: -6.89 SS G_CDS: -2.15 Total: -9.03 kcal Atomic # 7 Polarization: -39.06 SS G_CDS: 0.48 Total: -38.58 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: -0.61 Total: -16.93 kcal Atomic # 14 Polarization: 24.57 SS G_CDS: -4.50 Total: 20.07 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.50 Total: -2.17 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.55 -7.43 -38.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050337145.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.435 kcal (2) G-P(sol) polarization free energy of solvation -31.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds