Wall clock time and date at job start Tue Mar 31 2020 05:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47057 * 2 1 4 4 C 1.50696 * 109.47712 * 239.99735 * 2 1 3 5 5 H 1.07999 * 120.00319 * 240.00495 * 4 2 1 6 6 C 1.37885 * 119.99717 * 59.99878 * 4 2 1 7 7 N 1.31516 * 119.99913 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46506 * 109.47074 * 119.99711 * 2 1 3 13 13 C 1.34781 * 120.00067 * 275.00178 * 12 2 1 14 14 O 1.21281 * 119.99724 * 359.97438 * 13 12 2 15 15 C 1.50697 * 119.99965 * 179.97438 * 13 12 2 16 16 O 1.42893 * 109.47010 * 180.02562 * 15 13 12 17 17 C 1.35926 * 116.99920 * 180.02562 * 16 15 13 18 18 C 1.38722 * 120.04143 * 359.72139 * 17 16 15 19 19 C 1.38146 * 119.95587 * 179.79535 * 18 17 16 20 20 C 1.38363 * 120.04187 * 0.46490 * 19 18 17 21 21 Cl 1.73605 * 119.95760 * 179.77060 * 20 19 18 22 22 C 1.38366 * 120.08577 * 359.78546 * 20 19 18 23 23 C 1.38142 * 120.04375 * 359.97438 * 22 20 19 24 24 H 1.08997 * 109.46749 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47024 * 300.00143 * 1 2 3 26 26 H 1.08998 * 109.46637 * 59.99843 * 1 2 3 27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 28 28 H 0.97000 * 119.99972 * 95.00133 * 12 2 1 29 29 H 1.08996 * 109.47441 * 300.00678 * 15 13 12 30 30 H 1.09005 * 109.46714 * 60.00041 * 15 13 12 31 31 H 1.07996 * 120.02089 * 0.02661 * 18 17 16 32 32 H 1.08002 * 119.97993 * 180.22872 * 19 18 17 33 33 H 1.08002 * 119.98155 * 179.97438 * 22 20 19 34 34 H 1.07997 * 120.02515 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 2.1375 -0.8596 -3.5565 8 14 0.6260 1.2797 -2.6541 9 1 -0.8019 0.8744 -2.6994 10 1 0.8491 2.1773 -1.4922 11 1 0.9774 1.9953 -3.9070 12 7 2.0183 -0.6906 1.1963 13 6 2.1470 -0.0182 2.3572 14 8 1.8590 1.1587 2.4115 15 6 2.6488 -0.7287 3.5879 16 8 2.6964 0.1894 4.6818 17 6 3.1309 -0.2947 5.8753 18 6 3.4981 -1.6273 5.9919 19 6 3.9435 -2.1165 7.2047 20 6 4.0143 -1.2805 8.3049 21 17 4.5686 -1.8990 9.8294 22 6 3.6435 0.0477 8.1918 23 6 3.2023 0.5418 6.9796 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3632 0.5139 -0.8900 27 1 1.9028 -0.5285 -4.4375 28 1 2.2491 -1.6317 1.1527 29 1 1.9760 -1.5505 3.8327 30 1 3.6480 -1.1212 3.3987 31 1 3.4394 -2.2810 5.1343 32 1 4.2330 -3.1531 7.2950 33 1 3.6990 0.6987 9.0518 34 1 2.9126 1.5785 6.8917 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050337147.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:26 Heat of formation + Delta-G solvation = -51.885578 kcal Electronic energy + Delta-G solvation = -18934.429244 eV Core-core repulsion = 15665.836420 eV Total energy + Delta-G solvation = -3268.592824 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.52691 -39.10114 -37.69921 -36.39566 -35.06568 -32.52579 -31.56442 -30.67704 -29.87421 -27.73934 -25.24649 -23.32965 -22.57707 -21.27223 -19.79791 -18.62568 -17.59192 -16.79214 -16.38567 -16.34651 -15.71907 -15.46374 -14.76515 -14.43516 -14.19832 -13.85303 -13.46543 -13.44180 -12.98222 -12.79789 -12.47543 -12.26232 -12.08563 -11.82852 -11.58488 -11.33637 -11.03639 -10.88529 -10.86913 -10.25089 -9.77240 -9.44078 -9.31532 -9.28839 -8.82872 -8.39629 -8.30073 -6.26941 -4.30352 0.90513 0.94330 1.89289 2.67177 2.98798 3.19684 3.32170 3.32233 3.36345 3.96644 4.26585 4.41400 4.49836 4.74495 4.90579 5.01451 5.04946 5.08425 5.11619 5.21749 5.58952 5.67094 5.92000 5.95655 6.23344 6.24885 6.30040 6.47884 6.77309 7.01361 7.13928 7.17481 7.41924 8.02752 8.39258 8.66081 8.76742 9.33092 10.85026 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.052477 B = 0.002747 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.437653 B =10189.444975 C =10533.254246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.239 3.761 3 H 0.050 0.950 4 C -0.537 4.537 5 H 0.081 0.919 6 C 0.079 3.921 7 N -0.891 5.891 8 Si 0.885 3.115 9 H -0.276 1.276 10 H -0.261 1.261 11 H -0.293 1.293 12 N -0.696 5.696 13 C 0.505 3.495 14 O -0.532 6.532 15 C 0.038 3.962 16 O -0.283 6.283 17 C 0.142 3.858 18 C -0.201 4.201 19 C -0.068 4.068 20 C -0.079 4.079 21 Cl -0.077 7.077 22 C -0.070 4.070 23 C -0.139 4.139 24 H 0.054 0.946 25 H 0.036 0.964 26 H 0.049 0.951 27 H 0.268 0.732 28 H 0.397 0.603 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.140 0.860 32 H 0.136 0.864 33 H 0.139 0.861 34 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.883 -3.389 22.299 22.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.136 3.864 3 H 0.068 0.932 4 C -0.575 4.575 5 H 0.099 0.901 6 C -0.125 4.125 7 N -0.527 5.527 8 Si 0.715 3.285 9 H -0.202 1.202 10 H -0.186 1.186 11 H -0.221 1.221 12 N -0.346 5.346 13 C 0.288 3.712 14 O -0.409 6.409 15 C -0.041 4.041 16 O -0.194 6.194 17 C 0.095 3.905 18 C -0.220 4.220 19 C -0.086 4.086 20 C -0.105 4.105 21 Cl -0.048 7.048 22 C -0.088 4.088 23 C -0.158 4.158 24 H 0.073 0.927 25 H 0.055 0.945 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.230 0.770 29 H 0.109 0.891 30 H 0.111 0.889 31 H 0.158 0.842 32 H 0.154 0.846 33 H 0.157 0.843 34 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 2.660 -2.392 22.177 22.464 hybrid contribution -0.369 -0.135 -0.235 0.458 sum 2.291 -2.526 21.942 22.205 Atomic orbital electron populations 1.22463 0.99124 1.00990 0.99500 1.19153 0.90249 0.94729 0.82301 0.93186 1.21004 1.33537 1.14557 0.88439 0.90099 1.24829 0.95456 0.96720 0.95491 1.69862 1.44717 1.40060 0.98093 0.86878 0.80525 0.83558 0.77573 1.20229 1.18600 1.22059 1.46075 1.65368 1.13939 1.09265 1.19859 0.79473 0.87676 0.84157 1.90712 1.49865 1.15634 1.84702 1.22674 1.03016 0.92530 0.85891 1.86217 1.80022 1.37497 1.15702 1.19206 0.93092 0.92170 0.86034 1.21290 1.06466 0.95015 0.99226 1.20832 0.97279 0.99795 0.90721 1.20769 1.07311 0.94668 0.87775 1.98360 1.88419 1.87599 1.30423 1.20852 0.96888 0.93485 0.97598 1.20432 1.04480 1.00790 0.90089 0.92689 0.94455 0.93275 0.92183 0.76964 0.89064 0.88925 0.84247 0.84638 0.84285 0.83951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.53 8.97 37.16 0.33 -3.20 16 2 C 0.24 5.51 2.15 -69.08 -0.15 5.36 16 3 H 0.05 1.29 6.63 -51.93 -0.34 0.94 16 4 C -0.54 -14.08 9.31 -34.44 -0.32 -14.40 16 5 H 0.08 2.21 7.98 -52.49 -0.42 1.79 16 6 C 0.08 2.17 5.45 -17.82 -0.10 2.07 16 7 N -0.89 -25.87 13.96 55.43 0.77 -25.09 16 8 Si 0.89 21.36 24.37 -169.99 -4.14 17.22 16 9 H -0.28 -6.43 6.87 56.52 0.39 -6.04 16 10 H -0.26 -6.28 6.53 56.52 0.37 -5.91 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 12 N -0.70 -12.93 5.07 -54.93 -0.28 -13.21 16 13 C 0.51 9.11 7.87 -10.98 -0.09 9.02 16 14 O -0.53 -12.03 16.16 -14.35 -0.23 -12.26 16 15 C 0.04 0.48 5.22 36.00 0.19 0.67 16 16 O -0.28 -4.09 9.67 -39.42 -0.38 -4.47 16 17 C 0.14 1.67 6.69 -39.22 -0.26 1.40 16 18 C -0.20 -1.94 9.04 -39.44 -0.36 -2.30 16 19 C -0.07 -0.60 9.82 -39.57 -0.39 -0.99 16 20 C -0.08 -0.74 6.32 -39.49 -0.25 -0.99 16 21 Cl -0.08 -0.67 28.95 -51.86 -1.50 -2.17 16 22 C -0.07 -0.63 9.82 -39.57 -0.39 -1.02 16 23 C -0.14 -1.46 9.99 -39.44 -0.39 -1.86 16 24 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 25 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.05 1.11 3.27 -51.93 -0.17 0.94 16 27 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 28 H 0.40 6.15 8.54 -40.82 -0.35 5.80 16 29 H 0.09 0.88 7.65 -51.93 -0.40 0.49 16 30 H 0.09 0.94 7.67 -51.93 -0.40 0.54 16 31 H 0.14 1.06 6.30 -52.49 -0.33 0.73 16 32 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 33 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 34 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 306.15 15.07 4.61 4.61 Total: -1.00 -31.92 306.15 -7.02 -38.94 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -3.70 Total: 2.66 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: -2.17 Total: -6.23 kcal Atomic # 7 Polarization: -38.80 SS G_CDS: 0.50 Total: -38.30 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: -0.61 Total: -16.73 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.14 Total: 17.22 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.50 Total: -2.17 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.92 -7.02 -38.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050337147.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.946 kcal (2) G-P(sol) polarization free energy of solvation -31.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds