Wall clock time and date at job start Tue Mar 31 2020 05:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47174 * 2 1 4 4 O 1.42905 * 109.46919 * 240.00462 * 2 1 3 5 5 C 1.35889 * 117.00358 * 87.80705 * 4 2 1 6 6 C 1.38763 * 120.05004 * 355.27617 * 5 4 2 7 7 C 1.38133 * 119.96895 * 180.02562 * 6 5 4 8 8 C 1.38265 * 120.06958 * 0.25415 * 7 6 5 9 9 C 1.38360 * 120.09627 * 359.48843 * 8 7 6 10 10 Cl 1.73601 * 119.98451 * 180.27679 * 9 8 7 11 11 C 1.38282 * 120.03075 * 0.51236 * 9 8 7 12 12 C 1.50695 * 109.47574 * 120.00122 * 2 1 3 13 13 O 1.21295 * 120.00347 * 119.99537 * 12 2 1 14 14 N 1.34780 * 119.99848 * 299.99930 * 12 2 1 15 15 C 1.46504 * 119.99928 * 359.97438 * 14 12 2 16 16 C 1.37093 * 119.99839 * 179.97438 * 14 12 2 17 17 H 1.08001 * 120.00044 * 320.32445 * 16 14 12 18 18 C 1.38947 * 119.99907 * 140.33178 * 16 14 12 19 19 N 1.31410 * 120.00293 * 161.46725 * 18 16 14 20 20 Si 1.86800 * 119.99866 * 341.46372 * 18 16 14 21 21 H 1.48503 * 109.47104 * 95.39236 * 20 18 16 22 22 H 1.48499 * 109.47360 * 215.39119 * 20 18 16 23 23 H 1.48498 * 109.47192 * 335.39272 * 20 18 16 24 24 H 1.09004 * 109.47583 * 59.99859 * 1 2 3 25 25 H 1.08994 * 109.47278 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46879 * 300.00037 * 1 2 3 27 27 H 1.07997 * 120.01696 * 0.02562 * 6 5 4 28 28 H 1.08006 * 119.96024 * 179.97438 * 7 6 5 29 29 H 1.08001 * 119.94678 * 179.72059 * 8 7 6 30 30 H 1.08005 * 120.03351 * 179.76943 * 11 9 8 31 31 H 1.08998 * 109.47032 * 87.14338 * 15 14 12 32 32 H 1.08994 * 109.46909 * 207.14025 * 15 14 12 33 33 H 1.09001 * 109.46832 * 327.14653 * 15 14 12 34 34 H 0.96999 * 120.00217 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1669 5 6 2.1682 0.0757 -2.2889 6 6 1.7828 1.4087 -2.2959 7 6 1.9477 2.1687 -3.4376 8 6 2.4916 1.6011 -4.5750 9 6 2.8818 0.2737 -4.5695 10 17 3.5710 -0.4340 -5.9971 11 6 2.7186 -0.4909 -3.4289 12 6 2.0324 -0.7104 1.2304 13 8 2.7297 -1.6966 1.1191 14 7 1.7068 -0.2499 2.4545 15 6 0.8650 0.9415 2.5890 16 6 2.1635 -0.8965 3.5738 17 1 2.1949 -1.9758 3.5990 18 6 2.5858 -0.1633 4.6760 19 7 2.6750 -0.7396 5.8536 20 14 3.0268 1.6417 4.4837 21 1 1.8509 2.4786 4.8332 22 1 4.1572 1.9741 5.3876 23 1 3.4230 1.9073 3.0774 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.3540 1.8518 -1.4093 28 1 1.6472 3.2061 -3.4430 29 1 2.6155 2.1959 -5.4679 30 1 3.0197 -1.5281 -3.4257 31 1 -0.1847 0.6486 2.5712 32 1 1.0874 1.4389 3.5330 33 1 1.0660 1.6235 1.7627 34 1 2.9701 -0.2278 6.6229 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051018347.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:25 Heat of formation + Delta-G solvation = -28.209928 kcal Electronic energy + Delta-G solvation = -19887.079588 eV Core-core repulsion = 16619.513418 eV Total energy + Delta-G solvation = -3267.566170 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.49829 -38.91920 -37.47473 -36.35877 -34.93167 -32.65673 -31.60336 -30.64106 -29.75235 -26.63350 -25.55493 -23.95582 -22.94440 -21.99299 -19.22007 -18.47454 -17.22227 -16.37459 -16.27647 -15.87700 -15.72238 -15.34824 -14.74837 -14.26020 -14.16474 -13.75931 -13.54007 -13.18236 -12.88002 -12.72260 -12.33572 -12.18453 -11.99455 -11.83976 -11.70106 -11.49641 -11.19314 -10.98237 -10.93009 -10.73740 -10.35715 -10.01692 -9.15803 -9.01032 -8.65433 -8.26455 -7.85214 -6.46899 -4.09984 0.97416 1.22405 1.88178 2.94010 3.09095 3.14440 3.17049 3.48250 3.55249 4.05397 4.35701 4.60572 4.77509 4.83511 4.92759 4.98337 5.10971 5.14418 5.26047 5.30817 5.52450 5.64191 5.70348 5.76078 5.91984 6.00428 6.07611 6.14867 6.18346 6.26939 6.41309 7.31808 7.49449 8.16276 8.39361 8.83879 9.18189 9.60294 10.64676 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.031075 B = 0.003955 C = 0.003844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.827514 B = 7077.652543 C = 7282.544655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.067 3.933 3 H 0.089 0.911 4 O -0.276 6.276 5 C 0.155 3.845 6 C -0.212 4.212 7 C -0.066 4.066 8 C -0.158 4.158 9 C 0.006 3.994 10 Cl -0.068 7.068 11 C -0.148 4.148 12 C 0.468 3.532 13 O -0.540 6.540 14 N -0.464 5.464 15 C 0.058 3.942 16 C -0.317 4.317 17 H 0.107 0.893 18 C 0.061 3.939 19 N -0.863 5.863 20 Si 0.882 3.118 21 H -0.274 1.274 22 H -0.286 1.286 23 H -0.266 1.266 24 H 0.064 0.936 25 H 0.073 0.927 26 H 0.091 0.909 27 H 0.137 0.863 28 H 0.134 0.866 29 H 0.132 0.868 30 H 0.143 0.857 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.054 0.946 34 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.511 9.247 -17.658 20.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.007 3.993 3 H 0.107 0.893 4 O -0.188 6.188 5 C 0.108 3.892 6 C -0.231 4.231 7 C -0.084 4.084 8 C -0.177 4.177 9 C -0.021 4.021 10 Cl -0.039 7.039 11 C -0.167 4.167 12 C 0.254 3.746 13 O -0.419 6.419 14 N -0.188 5.188 15 C -0.085 4.085 16 C -0.443 4.443 17 H 0.125 0.875 18 C -0.146 4.146 19 N -0.498 5.498 20 Si 0.710 3.290 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.190 1.190 24 H 0.083 0.917 25 H 0.092 0.908 26 H 0.109 0.891 27 H 0.154 0.846 28 H 0.151 0.849 29 H 0.150 0.850 30 H 0.161 0.839 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.004 8.450 -17.571 19.905 hybrid contribution 0.220 1.215 0.056 1.236 sum -3.784 9.666 -17.516 20.360 Atomic orbital electron populations 1.22567 0.93433 1.04546 1.03776 1.22445 0.95340 0.96955 0.84583 0.89299 1.86260 1.80082 1.35838 1.16591 1.18936 0.93164 0.89952 0.87166 1.21471 1.07098 0.93901 1.00605 1.20864 0.96385 0.99619 0.91536 1.20889 1.03590 0.93427 0.99806 1.20535 0.99858 0.93573 0.88144 1.98370 1.83186 1.84253 1.38111 1.20238 1.04549 1.01676 0.90259 1.19807 0.83539 0.87867 0.83387 1.90611 1.39003 1.26798 1.85461 1.43513 1.44353 1.26237 1.04724 1.22235 0.95620 0.89128 1.01561 1.19057 1.42720 0.93786 0.88783 0.87522 1.25400 0.95408 0.98866 0.94878 1.69706 1.43335 1.37868 0.98939 0.86878 0.78310 0.84839 0.78987 1.20079 1.21232 1.19013 0.91656 0.90750 0.89071 0.84570 0.84858 0.85010 0.83945 0.92166 0.91487 0.92762 0.91401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.55 8.92 37.16 0.33 -2.22 16 2 C 0.07 1.16 1.83 -27.89 -0.05 1.10 16 3 H 0.09 1.34 5.35 -51.93 -0.28 1.07 16 4 O -0.28 -5.04 9.32 -39.30 -0.37 -5.40 16 5 C 0.16 2.32 6.63 -39.22 -0.26 2.06 16 6 C -0.21 -2.57 8.40 -39.43 -0.33 -2.91 16 7 C -0.07 -0.66 10.04 -39.61 -0.40 -1.06 16 8 C -0.16 -1.64 9.83 -39.53 -0.39 -2.03 16 9 C 0.01 0.07 6.32 -39.52 -0.25 -0.18 16 10 Cl -0.07 -0.74 28.95 -51.86 -1.50 -2.24 16 11 C -0.15 -2.05 9.77 -39.40 -0.38 -2.44 16 12 C 0.47 10.90 7.11 -10.99 -0.08 10.82 16 13 O -0.54 -15.10 16.39 -14.36 -0.24 -15.33 16 14 N -0.46 -10.91 2.55 -122.19 -0.31 -11.23 16 15 C 0.06 1.05 7.48 59.85 0.45 1.49 16 16 C -0.32 -8.83 9.35 -14.94 -0.14 -8.97 16 17 H 0.11 3.36 7.95 -52.49 -0.42 2.94 16 18 C 0.06 1.65 5.34 -17.47 -0.09 1.55 16 19 N -0.86 -24.52 13.96 55.50 0.77 -23.75 16 20 Si 0.88 19.90 24.87 -169.99 -4.23 15.67 16 21 H -0.27 -5.64 6.73 56.52 0.38 -5.26 16 22 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 23 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 24 H 0.06 0.72 7.30 -51.93 -0.38 0.35 16 25 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 26 H 0.09 1.13 4.48 -51.93 -0.23 0.90 16 27 H 0.14 1.46 5.57 -52.49 -0.29 1.16 16 28 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 29 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 30 H 0.14 1.96 8.06 -52.48 -0.42 1.53 16 31 H 0.06 0.93 6.76 -51.93 -0.35 0.58 16 32 H 0.07 1.30 3.41 -51.93 -0.18 1.12 16 33 H 0.05 0.79 6.23 -51.93 -0.32 0.46 16 34 H 0.28 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 295.66 15.07 4.46 4.46 Total: -1.00 -32.34 295.66 -6.31 -38.65 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -3.30 Total: 1.95 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: -1.60 Total: -2.77 kcal Atomic # 7 Polarization: -35.44 SS G_CDS: 0.46 Total: -34.97 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: -0.60 Total: -20.74 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -4.23 Total: 15.67 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -1.50 Total: -2.24 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -32.34 -6.31 -38.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051018347.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.436 kcal (2) G-P(sol) polarization free energy of solvation -32.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds