Wall clock time and date at job start Tue Mar 31 2020 05:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34227 * 116.99860 * 2 1 4 4 O 1.20828 * 119.99988 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00105 * 179.97438 * 3 2 1 6 6 N 1.46506 * 109.46895 * 179.97438 * 5 3 2 7 7 C 1.36935 * 119.99876 * 263.33359 * 6 5 3 8 8 H 1.07998 * 119.99473 * 142.26987 * 7 6 5 9 9 C 1.38817 * 120.00384 * 322.27350 * 7 6 5 10 10 N 1.31614 * 120.00238 * 157.58283 * 9 7 6 11 11 Si 1.86799 * 119.99732 * 337.58583 * 9 7 6 12 12 H 1.48498 * 109.47279 * 95.87175 * 11 9 7 13 13 H 1.48498 * 109.46953 * 215.87444 * 11 9 7 14 14 H 1.48506 * 109.46975 * 335.86903 * 11 9 7 15 15 C 1.46497 * 119.99640 * 83.06824 * 6 5 3 16 16 C 1.50695 * 109.47599 * 89.99597 * 15 6 5 17 17 C 1.38242 * 119.98831 * 269.72323 * 16 15 6 18 18 C 1.38216 * 120.01224 * 179.72055 * 17 16 15 19 19 C 1.38349 * 119.98581 * 0.55446 * 18 17 16 20 20 Cl 1.73599 * 120.01257 * 179.70168 * 19 18 17 21 21 C 1.38355 * 119.97793 * 359.71846 * 19 18 17 22 22 C 1.38217 * 119.98148 * 0.02562 * 21 19 18 23 23 H 1.08997 * 109.47637 * 300.00049 * 1 2 3 24 24 H 1.09003 * 109.47369 * 60.00790 * 1 2 3 25 25 H 1.09005 * 109.47270 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46878 * 59.99908 * 5 3 2 27 27 H 1.08998 * 109.46807 * 299.99447 * 5 3 2 28 28 H 0.96993 * 120.00303 * 179.97438 * 10 9 7 29 29 H 1.09006 * 109.46518 * 209.99874 * 15 6 5 30 30 H 1.09004 * 109.47408 * 329.99112 * 15 6 5 31 31 H 1.08002 * 119.98954 * 359.97438 * 17 16 15 32 32 H 1.07999 * 120.00359 * 180.27325 * 18 17 16 33 33 H 1.07994 * 120.00695 * 179.97438 * 21 19 18 34 34 H 1.08002 * 119.98835 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9815 2.6799 -0.0002 7 6 4.3081 3.2967 -1.1783 8 1 4.0320 4.3277 -1.3426 9 6 4.9940 2.5967 -2.1615 10 7 4.9309 2.9911 -3.4155 11 14 6.0065 1.0949 -1.7045 12 1 5.1977 -0.1317 -1.9200 13 1 7.2233 1.0411 -2.5540 14 1 6.4035 1.1815 -0.2761 15 6 4.0418 3.4265 1.2589 16 6 5.4148 3.2828 1.8630 17 6 5.6792 2.2467 2.7392 18 6 6.9400 2.1111 3.2891 19 6 7.9343 3.0191 2.9714 20 17 9.5159 2.8539 3.6678 21 6 7.6676 4.0592 2.0989 22 6 6.4079 4.1907 1.5455 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5137 -0.8901 25 1 -0.3634 -1.0277 0.0005 26 1 3.9563 0.7806 -0.8891 27 1 3.9556 0.7811 0.8909 28 1 5.4104 2.5022 -4.1024 29 1 3.8378 4.4799 1.0666 30 1 3.2973 3.0327 1.9509 31 1 4.9016 1.5407 2.9908 32 1 7.1477 1.2990 3.9701 33 1 8.4432 4.7686 1.8510 34 1 6.1994 5.0028 0.8647 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052864282.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:12 Heat of formation + Delta-G solvation = -40.390392 kcal Electronic energy + Delta-G solvation = -20094.695406 eV Core-core repulsion = 16826.601051 eV Total energy + Delta-G solvation = -3268.094355 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.74696 -39.01797 -36.61709 -36.08049 -35.16981 -32.14985 -30.89430 -30.71859 -28.49633 -26.52312 -25.84866 -22.52883 -22.40970 -20.97178 -20.07466 -17.33766 -17.05353 -16.75315 -16.12832 -15.63646 -15.20836 -15.00953 -14.81414 -14.34136 -13.52364 -13.25241 -13.14352 -13.05894 -12.90301 -12.66122 -12.38097 -11.74508 -11.68339 -11.39681 -11.19899 -11.08163 -10.75756 -10.64353 -10.54210 -10.35983 -10.27299 -9.83313 -9.69789 -8.77449 -8.69379 -8.23769 -7.19583 -6.19319 -3.63697 1.48383 1.64092 2.33765 2.95833 3.16416 3.29354 3.38050 3.42916 3.96707 4.33737 4.84311 5.05842 5.15109 5.15909 5.35825 5.40178 5.45476 5.56392 5.63078 5.71411 5.78900 5.87409 5.98539 6.01294 6.08457 6.29967 6.47302 6.52408 6.63200 6.97584 7.02540 7.17800 7.75892 8.17505 8.46972 8.73226 9.45681 9.79442 10.94583 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.017399 B = 0.005799 C = 0.005041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.887828 B = 4826.916411 C = 5553.602530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.376 6.376 3 C 0.428 3.572 4 O -0.495 6.495 5 C 0.141 3.859 6 N -0.563 5.563 7 C -0.273 4.273 8 H 0.086 0.914 9 C 0.043 3.957 10 N -0.884 5.884 11 Si 0.858 3.142 12 H -0.281 1.281 13 H -0.294 1.294 14 H -0.256 1.256 15 C 0.182 3.818 16 C -0.077 4.077 17 C -0.108 4.108 18 C -0.116 4.116 19 C -0.047 4.047 20 Cl -0.091 7.091 21 C -0.113 4.113 22 C -0.083 4.083 23 H 0.054 0.946 24 H 0.057 0.943 25 H 0.090 0.910 26 H 0.099 0.901 27 H 0.081 0.919 28 H 0.267 0.733 29 H 0.072 0.928 30 H 0.055 0.945 31 H 0.123 0.877 32 H 0.124 0.876 33 H 0.127 0.873 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.891 -3.647 12.168 12.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.293 6.293 3 C 0.267 3.733 4 O -0.380 6.380 5 C 0.011 3.989 6 N -0.281 5.281 7 C -0.401 4.401 8 H 0.103 0.897 9 C -0.159 4.159 10 N -0.523 5.523 11 Si 0.686 3.314 12 H -0.209 1.209 13 H -0.221 1.221 14 H -0.180 1.180 15 C 0.057 3.943 16 C -0.080 4.080 17 C -0.127 4.127 18 C -0.135 4.135 19 C -0.074 4.074 20 Cl -0.062 7.062 21 C -0.132 4.132 22 C -0.102 4.102 23 H 0.073 0.927 24 H 0.076 0.924 25 H 0.109 0.891 26 H 0.117 0.883 27 H 0.099 0.901 28 H 0.077 0.923 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.141 0.859 32 H 0.142 0.858 33 H 0.145 0.855 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.841 -3.325 12.013 12.493 hybrid contribution 0.581 -0.965 -0.043 1.127 sum 1.422 -4.289 11.970 12.794 Atomic orbital electron populations 1.23078 0.78511 1.02484 1.01935 1.86616 1.22100 1.35712 1.84900 1.26458 0.94147 0.80853 0.71865 1.90570 1.66795 1.36387 1.44297 1.21272 0.85162 0.89282 1.03154 1.43846 1.72818 1.07821 1.03610 1.18797 1.31719 0.99102 0.90483 0.89653 1.25497 0.97230 0.98016 0.95192 1.69860 1.41534 1.41296 0.99589 0.87178 0.81139 0.83058 0.80003 1.20890 1.22104 1.17962 1.20034 0.89541 0.97955 0.86765 1.21070 0.99444 0.93773 0.93730 1.20978 0.95970 0.98226 0.97543 1.20904 0.92573 0.98707 1.01284 1.20804 0.86239 0.99399 1.00927 1.98329 1.26418 1.97637 1.83845 1.21033 0.97824 0.97415 0.96944 1.21088 0.91584 0.99620 0.97872 0.92681 0.92423 0.89146 0.88342 0.90087 0.92260 0.91004 0.92704 0.85861 0.85755 0.85542 0.84745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.56 101.05 1.07 1.54 16 2 O -0.38 -6.73 10.57 -39.25 -0.41 -7.14 16 3 C 0.43 8.80 8.01 36.01 0.29 9.09 16 4 O -0.50 -11.41 16.10 -18.75 -0.30 -11.71 16 5 C 0.14 2.91 4.86 -5.19 -0.03 2.88 16 6 N -0.56 -12.49 1.57 -175.98 -0.28 -12.77 16 7 C -0.27 -7.16 9.91 -15.06 -0.15 -7.30 16 8 H 0.09 2.44 8.06 -52.49 -0.42 2.02 16 9 C 0.04 1.18 5.26 -17.43 -0.09 1.09 16 10 N -0.88 -25.81 13.97 55.49 0.78 -25.03 16 11 Si 0.86 20.58 25.05 -169.99 -4.26 16.33 16 12 H -0.28 -6.52 6.70 56.52 0.38 -6.14 16 13 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 14 H -0.26 -5.96 7.11 56.52 0.40 -5.55 16 15 C 0.18 3.38 5.72 -5.20 -0.03 3.35 16 16 C -0.08 -1.32 5.46 -104.62 -0.57 -1.90 16 17 C -0.11 -1.66 9.70 -39.59 -0.38 -2.05 16 18 C -0.12 -1.70 9.83 -39.55 -0.39 -2.09 16 19 C -0.05 -0.71 6.32 -39.50 -0.25 -0.96 16 20 Cl -0.09 -1.22 28.96 -51.86 -1.50 -2.73 16 21 C -0.11 -1.76 9.83 -39.55 -0.39 -2.14 16 22 C -0.08 -1.39 9.70 -39.59 -0.38 -1.77 16 23 H 0.05 0.72 8.13 -51.93 -0.42 0.30 16 24 H 0.06 0.83 8.13 -51.93 -0.42 0.41 16 25 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.10 2.21 3.67 -51.93 -0.19 2.02 16 27 H 0.08 1.42 8.12 -51.93 -0.42 1.00 16 28 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 29 H 0.07 1.33 7.98 -51.93 -0.41 0.92 16 30 H 0.05 0.93 8.01 -51.93 -0.42 0.51 16 31 H 0.12 1.65 8.06 -52.49 -0.42 1.22 16 32 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 33 H 0.13 1.72 8.06 -52.49 -0.42 1.29 16 34 H 0.13 2.22 8.06 -52.49 -0.42 1.80 16 LS Contribution 313.08 15.07 4.72 4.72 Total: -1.00 -30.45 313.08 -6.55 -37.00 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -3.98 Total: 1.60 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: -1.31 Total: -0.26 kcal Atomic # 7 Polarization: -38.30 SS G_CDS: 0.50 Total: -37.80 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: -0.72 Total: -18.85 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -4.26 Total: 16.33 kcal Atomic # 17 Polarization: -1.22 SS G_CDS: -1.50 Total: -2.73 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.45 -6.55 -37.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052864282.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.393 kcal (2) G-P(sol) polarization free energy of solvation -30.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds