Wall clock time and date at job start Tue Mar 31 2020 05:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37099 * 120.00172 * 2 1 4 4 H 1.07994 * 119.99676 * 142.82579 * 3 2 1 5 5 C 1.38945 * 119.99783 * 322.82711 * 3 2 1 6 6 N 1.31414 * 119.99820 * 158.40659 * 5 3 2 7 7 Si 1.86796 * 120.00242 * 338.40970 * 5 3 2 8 8 H 1.48499 * 109.47321 * 95.72195 * 7 5 3 9 9 H 1.48506 * 109.46908 * 215.72078 * 7 5 3 10 10 H 1.48495 * 109.47336 * 335.71832 * 7 5 3 11 11 C 1.34773 * 119.99708 * 180.02562 * 2 1 3 12 12 O 1.21296 * 120.00139 * 179.97438 * 11 2 1 13 13 C 1.50701 * 120.00132 * 359.97438 * 11 2 1 14 14 C 1.52998 * 109.47075 * 179.97438 * 13 11 2 15 15 O 1.42906 * 109.47038 * 179.97438 * 14 13 11 16 16 C 1.35905 * 116.99625 * 180.02562 * 15 14 13 17 17 C 1.38759 * 120.05130 * 359.72500 * 16 15 14 18 18 C 1.38129 * 119.96602 * 179.74559 * 17 16 15 19 19 C 1.38263 * 120.07302 * 0.55542 * 18 17 16 20 20 C 1.38368 * 120.09656 * 359.69601 * 19 18 17 21 21 Cl 1.73595 * 119.98891 * 180.02562 * 20 19 18 22 22 C 1.38281 * 120.02763 * 0.02562 * 20 19 18 23 23 H 1.09009 * 109.46691 * 265.13642 * 1 2 3 24 24 H 1.09001 * 109.47166 * 25.12967 * 1 2 3 25 25 H 1.08993 * 109.47321 * 145.13767 * 1 2 3 26 26 H 0.96997 * 120.00372 * 179.97438 * 6 5 3 27 27 H 1.09005 * 109.47061 * 60.00112 * 13 11 2 28 28 H 1.08992 * 109.47400 * 299.99796 * 13 11 2 29 29 H 1.09006 * 109.47315 * 60.00448 * 14 13 11 30 30 H 1.08994 * 109.47584 * 300.00088 * 14 13 11 31 31 H 1.07994 * 120.01558 * 0.02594 * 17 16 15 32 32 H 1.08007 * 119.96617 * 180.24987 * 18 17 16 33 33 H 1.07997 * 119.95825 * 179.71800 * 19 18 17 34 34 H 1.08004 * 120.03521 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.0659 1.2822 0.5651 5 6 1.6675 2.2683 -0.7271 6 7 2.0433 3.4889 -0.4175 7 14 0.4840 1.9867 -2.1445 8 1 -0.9113 2.1586 -1.6661 9 1 0.7617 2.9683 -3.2237 10 1 0.6607 0.6094 -2.6708 11 6 2.1388 -1.1672 -0.0005 12 8 3.3518 -1.1673 -0.0010 13 6 1.3853 -2.4723 -0.0005 14 6 2.3795 -3.6352 -0.0018 15 8 1.6649 -4.8728 -0.0012 16 6 2.4051 -6.0126 -0.0017 17 6 3.7909 -5.9412 -0.0084 18 6 4.5415 -7.1007 -0.0036 19 6 3.9136 -8.3325 -0.0036 20 6 2.5319 -8.4070 -0.0021 21 17 1.7465 -9.9551 -0.0014 22 6 1.7765 -7.2488 -0.0011 23 1 -0.3633 -0.0871 1.0241 24 1 -0.3633 0.9304 -0.4364 25 1 -0.3633 -0.8432 -0.5874 26 1 1.7065 4.2436 -0.9252 27 1 0.7583 -2.5298 -0.8903 28 1 0.7590 -2.5303 0.8896 29 1 3.0068 -3.5780 0.8878 30 1 3.0055 -3.5772 -0.8922 31 1 4.2822 -4.9795 -0.0129 32 1 5.6201 -7.0451 -0.0048 33 1 4.5023 -9.2379 -0.0044 34 1 0.6980 -7.3069 0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060294331.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:54 Heat of formation + Delta-G solvation = -43.358224 kcal Electronic energy + Delta-G solvation = -19067.191187 eV Core-core repulsion = 15798.968137 eV Total energy + Delta-G solvation = -3268.223050 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.30682 -38.86913 -37.76879 -36.47869 -34.95755 -32.33459 -31.76418 -30.88454 -29.69247 -26.56595 -25.69761 -23.73544 -22.84740 -21.70512 -18.96775 -18.38374 -17.15349 -16.55903 -16.27407 -16.14292 -15.75738 -15.47859 -15.05523 -14.58631 -13.96883 -13.71244 -13.56183 -13.50191 -12.82234 -12.71371 -12.40579 -12.05656 -11.96105 -11.88010 -11.75617 -11.40480 -11.29440 -10.92581 -10.84891 -10.61331 -10.41830 -9.99133 -9.16348 -9.08257 -8.66481 -8.42313 -7.84178 -6.46715 -4.04752 0.91231 1.14149 1.79666 2.97709 3.07830 3.16837 3.21025 3.42938 3.60122 4.08073 4.44005 4.54858 4.84542 4.87178 4.91131 4.98489 5.15446 5.16714 5.20248 5.45202 5.54058 5.65641 5.79677 5.90071 5.91695 5.95590 6.08807 6.12136 6.16466 6.23341 6.37758 7.26926 7.45398 8.19097 8.40121 8.86329 9.22743 9.64424 10.65090 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.041259 B = 0.002973 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.477672 B = 9416.585097 C = 9803.158595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.465 5.465 3 C -0.320 4.320 4 H 0.107 0.893 5 C 0.059 3.941 6 N -0.861 5.861 7 Si 0.881 3.119 8 H -0.275 1.275 9 H -0.287 1.287 10 H -0.265 1.265 11 C 0.465 3.535 12 O -0.569 6.569 13 C -0.135 4.135 14 C 0.077 3.923 15 O -0.315 6.315 16 C 0.153 3.847 17 C -0.203 4.203 18 C -0.066 4.066 19 C -0.155 4.155 20 C 0.002 3.998 21 Cl -0.069 7.069 22 C -0.151 4.151 23 H 0.054 0.946 24 H 0.067 0.933 25 H 0.056 0.944 26 H 0.275 0.725 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.141 0.859 32 H 0.135 0.865 33 H 0.132 0.868 34 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.318 -21.394 0.102 21.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.187 5.187 3 C -0.446 4.446 4 H 0.124 0.876 5 C -0.147 4.147 6 N -0.497 5.497 7 Si 0.709 3.291 8 H -0.202 1.202 9 H -0.214 1.214 10 H -0.189 1.189 11 C 0.253 3.747 12 O -0.452 6.452 13 C -0.176 4.176 14 C 0.002 3.998 15 O -0.228 6.228 16 C 0.106 3.894 17 C -0.222 4.222 18 C -0.084 4.084 19 C -0.174 4.174 20 C -0.025 4.025 21 Cl -0.040 7.040 22 C -0.170 4.170 23 H 0.073 0.927 24 H 0.085 0.915 25 H 0.075 0.925 26 H 0.085 0.915 27 H 0.110 0.890 28 H 0.110 0.890 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.159 0.841 32 H 0.153 0.847 33 H 0.150 0.850 34 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -2.003 -21.245 0.071 21.339 hybrid contribution -0.669 0.073 -0.785 1.034 sum -2.672 -21.172 -0.714 21.352 Atomic orbital electron populations 1.22050 0.83182 1.01771 1.01254 1.43644 1.04190 1.05608 1.65255 1.19059 1.10303 0.85307 1.29978 0.87592 1.25381 0.97472 0.94753 0.97098 1.69751 1.43680 0.98116 1.38195 0.86904 0.80193 0.79059 0.82960 1.20176 1.21351 1.18888 1.19880 0.87988 0.84384 0.82413 1.90569 1.13757 1.87028 1.53870 1.21498 0.99072 0.92407 1.04603 1.22586 0.94498 0.79577 1.03120 1.86003 1.36137 1.12889 1.87794 1.18783 0.89869 0.86405 0.94328 1.21572 0.92939 1.00640 1.07039 1.20929 1.00200 0.91002 0.96294 1.20928 0.92230 0.98830 1.05435 1.20532 0.92633 0.86126 1.03168 1.98370 1.80965 1.27784 1.96865 1.20193 1.00882 0.88427 1.07526 0.92721 0.91509 0.92497 0.91469 0.88979 0.88976 0.90846 0.90854 0.84150 0.84710 0.84966 0.84183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.15 8.78 59.85 0.53 1.68 16 2 N -0.47 -10.99 2.59 -122.19 -0.32 -11.30 16 3 C -0.32 -8.92 9.37 -14.93 -0.14 -9.06 16 4 H 0.11 3.32 7.90 -52.49 -0.41 2.91 16 5 C 0.06 1.61 5.29 -17.47 -0.09 1.52 16 6 N -0.86 -24.59 13.96 55.50 0.77 -23.81 16 7 Si 0.88 20.13 24.96 -169.99 -4.24 15.88 16 8 H -0.27 -5.80 6.69 56.52 0.38 -5.42 16 9 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 10 H -0.26 -5.96 7.11 56.52 0.40 -5.56 16 11 C 0.47 10.32 7.63 -10.99 -0.08 10.23 16 12 O -0.57 -14.63 15.85 5.54 0.09 -14.54 16 13 C -0.14 -2.19 4.69 -27.88 -0.13 -2.32 16 14 C 0.08 1.16 4.03 37.16 0.15 1.31 16 15 O -0.31 -4.45 10.14 -19.44 -0.20 -4.65 16 16 C 0.15 1.97 6.69 -39.22 -0.26 1.71 16 17 C -0.20 -2.40 9.04 -39.43 -0.36 -2.75 16 18 C -0.07 -0.65 10.04 -39.61 -0.40 -1.05 16 19 C -0.16 -1.50 9.83 -39.52 -0.39 -1.89 16 20 C 0.00 0.02 6.32 -39.52 -0.25 -0.23 16 21 Cl -0.07 -0.66 28.95 -51.86 -1.50 -2.16 16 22 C -0.15 -1.76 9.77 -39.40 -0.38 -2.14 16 23 H 0.05 0.90 8.14 -51.92 -0.42 0.48 16 24 H 0.07 1.35 3.42 -51.93 -0.18 1.17 16 25 H 0.06 0.88 6.64 -51.93 -0.34 0.54 16 26 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 27 H 0.09 1.35 7.41 -51.93 -0.38 0.97 16 28 H 0.09 1.31 8.11 -51.93 -0.42 0.89 16 29 H 0.07 1.11 7.63 -51.93 -0.40 0.72 16 30 H 0.07 1.13 7.61 -51.93 -0.40 0.73 16 31 H 0.14 1.65 6.30 -52.49 -0.33 1.31 16 32 H 0.14 0.99 8.06 -52.48 -0.42 0.57 16 33 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 34 H 0.14 1.49 8.06 -52.48 -0.42 1.07 16 LS Contribution 304.46 15.07 4.59 4.59 Total: -1.00 -31.01 304.46 -6.33 -37.34 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -3.71 Total: 1.64 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: -1.81 Total: -3.00 kcal Atomic # 7 Polarization: -35.57 SS G_CDS: 0.46 Total: -35.11 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: -0.11 Total: -19.19 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -4.24 Total: 15.88 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -1.50 Total: -2.16 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.01 -6.33 -37.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060294331.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.014 kcal (2) G-P(sol) polarization free energy of solvation -31.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds