Wall clock time and date at job start Tue Mar 31 2020 05:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37099 * 120.00172 * 2 1 4 4 H 1.07994 * 119.99676 * 142.82579 * 3 2 1 5 5 C 1.38945 * 119.99783 * 322.82711 * 3 2 1 6 6 N 1.31414 * 119.99820 * 158.40659 * 5 3 2 7 7 Si 1.86796 * 120.00242 * 338.40970 * 5 3 2 8 8 H 1.48499 * 109.47321 * 95.72195 * 7 5 3 9 9 H 1.48506 * 109.46908 * 215.72078 * 7 5 3 10 10 H 1.48495 * 109.47336 * 335.71832 * 7 5 3 11 11 C 1.34773 * 119.99708 * 180.02562 * 2 1 3 12 12 O 1.21296 * 120.00139 * 179.97438 * 11 2 1 13 13 C 1.50701 * 120.00132 * 359.97438 * 11 2 1 14 14 C 1.52998 * 109.47075 * 179.97438 * 13 11 2 15 15 O 1.42906 * 109.47038 * 179.97438 * 14 13 11 16 16 C 1.35905 * 116.99625 * 180.02562 * 15 14 13 17 17 C 1.38759 * 120.05130 * 359.72500 * 16 15 14 18 18 C 1.38129 * 119.96602 * 179.74559 * 17 16 15 19 19 C 1.38263 * 120.07302 * 0.55542 * 18 17 16 20 20 C 1.38368 * 120.09656 * 359.69601 * 19 18 17 21 21 Cl 1.73595 * 119.98891 * 180.02562 * 20 19 18 22 22 C 1.38281 * 120.02763 * 0.02562 * 20 19 18 23 23 H 1.09009 * 109.46691 * 265.13642 * 1 2 3 24 24 H 1.09001 * 109.47166 * 25.12967 * 1 2 3 25 25 H 1.08993 * 109.47321 * 145.13767 * 1 2 3 26 26 H 0.96997 * 120.00372 * 179.97438 * 6 5 3 27 27 H 1.09005 * 109.47061 * 60.00112 * 13 11 2 28 28 H 1.08992 * 109.47400 * 299.99796 * 13 11 2 29 29 H 1.09006 * 109.47315 * 60.00448 * 14 13 11 30 30 H 1.08994 * 109.47584 * 300.00088 * 14 13 11 31 31 H 1.07994 * 120.01558 * 0.02594 * 17 16 15 32 32 H 1.08007 * 119.96617 * 180.24987 * 18 17 16 33 33 H 1.07997 * 119.95825 * 179.71800 * 19 18 17 34 34 H 1.08004 * 120.03521 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.0659 1.2822 0.5651 5 6 1.6675 2.2683 -0.7271 6 7 2.0433 3.4889 -0.4175 7 14 0.4840 1.9867 -2.1445 8 1 -0.9113 2.1586 -1.6661 9 1 0.7617 2.9683 -3.2237 10 1 0.6607 0.6094 -2.6708 11 6 2.1388 -1.1672 -0.0005 12 8 3.3518 -1.1673 -0.0010 13 6 1.3853 -2.4723 -0.0005 14 6 2.3795 -3.6352 -0.0018 15 8 1.6649 -4.8728 -0.0012 16 6 2.4051 -6.0126 -0.0017 17 6 3.7909 -5.9412 -0.0084 18 6 4.5415 -7.1007 -0.0036 19 6 3.9136 -8.3325 -0.0036 20 6 2.5319 -8.4070 -0.0021 21 17 1.7465 -9.9551 -0.0014 22 6 1.7765 -7.2488 -0.0011 23 1 -0.3633 -0.0871 1.0241 24 1 -0.3633 0.9304 -0.4364 25 1 -0.3633 -0.8432 -0.5874 26 1 1.7065 4.2436 -0.9252 27 1 0.7583 -2.5298 -0.8903 28 1 0.7590 -2.5303 0.8896 29 1 3.0068 -3.5780 0.8878 30 1 3.0055 -3.5772 -0.8922 31 1 4.2822 -4.9795 -0.0129 32 1 5.6201 -7.0451 -0.0048 33 1 4.5023 -9.2379 -0.0044 34 1 0.6980 -7.3069 0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060294331.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:53 Heat of formation + Delta-G solvation = -63.040934 kcal Electronic energy + Delta-G solvation = -19068.044693 eV Core-core repulsion = 15798.968137 eV Total energy + Delta-G solvation = -3269.076556 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.30398 -40.51911 -38.73347 -37.29486 -36.79829 -34.23533 -33.10556 -31.79828 -30.64513 -28.23503 -27.32320 -25.11882 -23.73341 -22.75481 -20.56794 -19.50519 -19.06517 -17.96202 -17.52967 -17.26176 -16.99732 -16.80887 -16.16241 -16.00725 -15.39350 -14.85247 -14.71142 -14.56298 -14.45979 -14.16271 -14.04040 -13.50623 -13.34646 -12.92947 -12.82595 -12.68345 -12.36966 -12.27463 -12.14119 -11.85340 -11.80750 -11.70037 -11.08692 -10.48988 -9.90981 -9.74963 -9.32316 -8.53850 -6.17762 0.07010 0.29759 0.98445 1.20358 1.33072 1.45775 1.87593 1.95592 2.16861 2.58554 2.81658 2.98604 3.66293 3.81240 3.94216 3.98183 4.03217 4.13324 4.19280 4.30142 4.40469 4.45721 4.58657 4.71549 4.80385 4.81467 4.84479 5.11418 5.24342 5.33782 5.49465 5.53514 6.00710 6.25777 6.50179 6.89186 7.25089 7.79381 8.63264 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.041259 B = 0.002973 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.477672 B = 9416.585097 C = 9803.158595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.481 5.481 3 C -0.340 4.340 4 H 0.045 0.955 5 C 0.009 3.991 6 N -0.911 5.911 7 Si 0.956 3.044 8 H -0.238 1.238 9 H -0.291 1.291 10 H -0.255 1.255 11 C 0.460 3.540 12 O -0.617 6.617 13 C -0.121 4.121 14 C 0.086 3.914 15 O -0.317 6.317 16 C 0.129 3.871 17 C -0.215 4.215 18 C -0.064 4.064 19 C -0.149 4.149 20 C -0.005 4.005 21 Cl -0.059 7.059 22 C -0.156 4.156 23 H 0.078 0.922 24 H 0.056 0.944 25 H 0.100 0.900 26 H 0.281 0.719 27 H 0.119 0.881 28 H 0.120 0.880 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.134 0.866 32 H 0.161 0.839 33 H 0.157 0.843 34 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.428 -23.953 -0.903 24.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.203 5.203 3 C -0.467 4.467 4 H 0.063 0.937 5 C -0.193 4.193 6 N -0.548 5.548 7 Si 0.779 3.221 8 H -0.163 1.163 9 H -0.219 1.219 10 H -0.179 1.179 11 C 0.250 3.750 12 O -0.502 6.502 13 C -0.161 4.161 14 C 0.010 3.990 15 O -0.231 6.231 16 C 0.083 3.917 17 C -0.234 4.234 18 C -0.082 4.082 19 C -0.168 4.168 20 C -0.031 4.031 21 Cl -0.030 7.030 22 C -0.175 4.175 23 H 0.097 0.903 24 H 0.074 0.926 25 H 0.118 0.882 26 H 0.091 0.909 27 H 0.137 0.863 28 H 0.138 0.862 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.152 0.848 32 H 0.178 0.822 33 H 0.174 0.826 34 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -4.146 -23.829 -0.912 24.204 hybrid contribution 0.109 0.757 -0.383 0.855 sum -4.038 -23.072 -1.295 23.459 Atomic orbital electron populations 1.22315 0.79831 1.03002 1.03691 1.43789 1.06262 1.04508 1.65702 1.18667 1.09525 0.87958 1.30597 0.93742 1.26228 0.99906 0.93816 0.99339 1.69871 1.45971 0.99310 1.39628 0.85736 0.79248 0.79005 0.78125 1.16289 1.21856 1.17922 1.20893 0.87798 0.86033 0.80229 1.90541 1.16310 1.88037 1.55340 1.21369 0.98781 0.88777 1.07148 1.22328 0.94065 0.80147 1.02413 1.85945 1.36027 1.12728 1.88424 1.18986 0.90377 0.86283 0.96086 1.21671 0.92869 1.01244 1.07601 1.21239 1.01468 0.90361 0.95165 1.21257 0.92084 0.99670 1.03767 1.20676 0.93156 0.86316 1.02989 1.98375 1.80890 1.26917 1.96795 1.20308 1.01400 0.88301 1.07495 0.90340 0.92576 0.88182 0.90936 0.86289 0.86168 0.91711 0.91753 0.84818 0.82183 0.82573 0.83552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.84 8.78 127.77 1.12 2.96 16 2 N -0.48 -22.50 2.59 -658.89 -1.70 -24.20 16 3 C -0.34 -19.73 9.37 84.04 0.79 -18.94 16 4 H 0.04 3.04 7.90 -2.91 -0.02 3.02 16 5 C 0.01 0.52 5.29 84.92 0.45 0.97 16 6 N -0.91 -53.75 13.96 21.66 0.30 -53.45 16 7 Si 0.96 40.76 24.96 68.60 1.71 42.47 16 8 H -0.24 -8.75 6.69 99.48 0.67 -8.09 16 9 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 10 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 11 C 0.46 20.30 7.63 87.66 0.67 20.97 16 12 O -0.62 -32.85 15.85 -3.08 -0.05 -32.90 16 13 C -0.12 -3.62 4.69 29.85 0.14 -3.48 16 14 C 0.09 2.51 4.03 71.98 0.29 2.80 16 15 O -0.32 -8.48 10.14 -92.48 -0.94 -9.42 16 16 C 0.13 3.17 6.69 22.50 0.15 3.32 16 17 C -0.22 -4.89 9.04 22.37 0.20 -4.69 16 18 C -0.06 -1.14 10.04 22.25 0.22 -0.91 16 19 C -0.15 -2.50 9.83 22.31 0.22 -2.28 16 20 C 0.00 -0.09 6.32 22.31 0.14 0.05 16 21 Cl -0.06 -1.00 28.95 -2.72 -0.08 -1.08 16 22 C -0.16 -3.38 9.77 22.39 0.22 -3.16 16 23 H 0.08 2.32 8.14 -2.38 -0.02 2.30 16 24 H 0.06 2.06 3.42 -2.39 -0.01 2.05 16 25 H 0.10 2.57 6.64 -2.39 -0.02 2.56 16 26 H 0.28 15.13 8.31 -92.71 -0.77 14.36 16 27 H 0.12 2.98 7.41 -2.38 -0.02 2.97 16 28 H 0.12 2.98 8.11 -2.39 -0.02 2.96 16 29 H 0.06 1.97 7.63 -2.38 -0.02 1.96 16 30 H 0.06 1.97 7.61 -2.39 -0.02 1.95 16 31 H 0.13 3.16 6.30 -2.91 -0.02 3.14 16 32 H 0.16 1.94 8.06 -2.91 -0.02 1.92 16 33 H 0.16 1.84 8.06 -2.91 -0.02 1.81 16 34 H 0.15 2.87 8.06 -2.91 -0.02 2.85 16 Total: -1.00 -71.71 304.46 4.94 -66.77 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: 1.08 Total: 14.19 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: 4.61 Total: -2.38 kcal Atomic # 7 Polarization: -76.25 SS G_CDS: -1.40 Total: -77.65 kcal Atomic # 8 Polarization: -41.34 SS G_CDS: -0.99 Total: -42.32 kcal Atomic # 14 Polarization: 40.76 SS G_CDS: 1.71 Total: 42.47 kcal Atomic # 17 Polarization: -1.00 SS G_CDS: -0.08 Total: -1.08 kcal Total: -71.71 4.94 -66.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060294331.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.730 kcal (2) G-P(sol) polarization free energy of solvation -71.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds