Wall clock time and date at job start Tue Mar 31 2020 05:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47049 * 2 1 4 4 C 1.50693 * 109.47177 * 119.99732 * 2 1 3 5 5 H 1.08007 * 119.99994 * 120.00331 * 4 2 1 6 6 C 1.37870 * 120.00423 * 300.00115 * 4 2 1 7 7 N 1.31518 * 119.99896 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 120.00444 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47068 * 90.00006 * 8 6 4 10 10 H 1.48497 * 109.47443 * 210.00210 * 8 6 4 11 11 H 1.48506 * 109.47045 * 330.00487 * 8 6 4 12 12 N 1.46496 * 109.47203 * 240.00168 * 2 1 3 13 13 C 1.46501 * 119.99942 * 299.99551 * 12 2 1 14 14 C 1.34770 * 120.00246 * 119.99701 * 12 2 1 15 15 O 1.21584 * 119.99889 * 6.96693 * 14 12 2 16 16 C 1.47613 * 120.00335 * 186.96709 * 14 12 2 17 17 C 1.39739 * 120.08093 * 20.37946 * 16 14 12 18 18 C 1.37702 * 119.93299 * 179.76650 * 17 16 14 19 19 C 1.38982 * 120.10139 * 0.51485 * 18 17 16 20 20 O 1.35726 * 119.91584 * 179.72092 * 19 18 17 21 21 C 1.39076 * 120.16772 * 359.74041 * 19 18 17 22 22 Cl 1.73592 * 119.96661 * 179.97438 * 21 19 18 23 23 C 1.37816 * 120.06606 * 0.02562 * 21 19 18 24 24 H 1.09007 * 109.47182 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47471 * 60.00240 * 1 2 3 26 26 H 1.09004 * 109.47143 * 299.99789 * 1 2 3 27 27 H 0.97006 * 119.99852 * 180.02562 * 7 6 4 28 28 H 1.09010 * 109.47107 * 86.49386 * 13 12 2 29 29 H 1.08997 * 109.47281 * 206.49496 * 13 12 2 30 30 H 1.08994 * 109.47349 * 326.49862 * 13 12 2 31 31 H 1.07999 * 120.03257 * 0.02698 * 17 16 14 32 32 H 1.08001 * 119.95141 * 180.25661 * 18 17 16 33 33 H 0.96706 * 114.00272 * 270.01984 * 20 19 18 34 34 H 1.07994 * 120.05377 * 180.02562 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2304 5 1 2.6533 -1.5884 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9427 0.8297 2.6034 8 14 2.3214 -1.1203 4.0079 9 1 3.6297 -0.5458 4.4124 10 1 1.3432 -0.9492 5.1120 11 1 2.4860 -2.5662 3.7119 12 7 2.0183 -0.6906 -1.1962 13 6 1.6645 -2.0932 -1.4280 14 6 2.7931 -0.0356 -2.0833 15 8 3.1915 1.0852 -1.8314 16 6 3.1580 -0.6788 -3.3608 17 6 2.3966 -1.7426 -3.8520 18 6 2.7369 -2.3373 -5.0465 19 6 3.8427 -1.8881 -5.7586 20 8 4.1781 -2.4807 -6.9327 21 6 4.6067 -0.8332 -5.2710 22 17 5.9871 -0.2768 -6.1644 23 6 4.2694 -0.2298 -4.0787 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 0.5138 0.8900 27 1 0.7087 1.1613 3.4844 28 1 0.7061 -2.1455 -1.9448 29 1 2.4333 -2.5656 -2.0393 30 1 1.5905 -2.6120 -0.4723 31 1 1.5395 -2.0952 -3.2975 32 1 2.1462 -3.1568 -5.4284 33 1 4.7880 -3.2251 -6.8375 34 1 4.8626 0.5896 -3.7005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063094099.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:08 Heat of formation + Delta-G solvation = -35.166135 kcal Electronic energy + Delta-G solvation = -19843.896448 eV Core-core repulsion = 16576.028633 eV Total energy + Delta-G solvation = -3267.867814 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.38282 -38.88667 -36.75145 -36.42352 -35.54964 -33.06867 -31.07144 -30.51449 -28.76981 -26.61207 -25.27894 -23.72797 -22.83223 -21.17614 -19.10910 -18.67691 -17.14796 -16.46179 -16.26815 -15.84050 -15.30072 -14.99473 -14.50529 -14.34120 -13.89536 -13.42851 -13.12347 -12.91573 -12.60731 -12.41035 -12.14648 -11.82451 -11.58845 -11.36739 -11.13306 -10.97494 -10.90160 -10.77592 -10.51402 -10.30796 -10.20104 -9.28794 -9.14543 -9.06108 -8.69156 -8.47396 -7.70838 -6.11662 -4.19940 0.65466 1.03194 1.96446 2.95264 3.24851 3.31663 3.32625 3.69905 3.86272 3.91361 4.35855 4.63177 4.79218 4.99900 5.15837 5.20044 5.30575 5.58209 5.66143 5.79234 5.85858 5.99909 6.18382 6.26047 6.42182 6.68661 6.76467 6.98280 7.29455 7.32011 7.45446 7.65473 7.94785 8.12913 8.39620 8.75081 8.91719 9.46523 10.93756 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.029564 B = 0.004015 C = 0.003887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.874986 B = 6971.927572 C = 7202.618154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.257 3.743 3 H 0.065 0.935 4 C -0.527 4.527 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.583 5.583 13 C 0.069 3.931 14 C 0.544 3.456 15 O -0.542 6.542 16 C -0.116 4.116 17 C -0.090 4.090 18 C -0.144 4.144 19 C 0.128 3.872 20 O -0.488 6.488 21 C -0.074 4.074 22 Cl -0.059 7.059 23 C -0.043 4.043 24 H 0.030 0.970 25 H 0.012 0.988 26 H 0.095 0.905 27 H 0.264 0.736 28 H 0.052 0.948 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.164 0.836 32 H 0.142 0.858 33 H 0.393 0.607 34 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.777 -9.073 -15.047 17.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.158 3.842 3 H 0.083 0.917 4 C -0.566 4.566 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.313 5.313 13 C -0.075 4.075 14 C 0.331 3.669 15 O -0.421 6.421 16 C -0.119 4.119 17 C -0.108 4.108 18 C -0.163 4.163 19 C 0.082 3.918 20 O -0.298 6.298 21 C -0.101 4.101 22 Cl -0.030 7.030 23 C -0.063 4.063 24 H 0.050 0.950 25 H 0.031 0.969 26 H 0.114 0.886 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.101 0.899 31 H 0.181 0.819 32 H 0.160 0.840 33 H 0.250 0.750 34 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 3.628 -7.893 -15.047 17.374 hybrid contribution 0.737 -0.854 0.908 1.449 sum 4.365 -8.747 -14.138 17.189 Atomic orbital electron populations 1.22102 0.97919 0.99529 1.00986 1.19013 0.90920 0.94576 0.79735 0.91720 1.21283 1.31958 1.13124 0.90212 0.92167 1.24887 0.94857 0.94974 0.98984 1.69876 1.36181 1.22586 1.23851 0.86481 0.78684 0.79829 0.82303 1.20573 1.21101 1.19914 1.48147 1.48334 1.11367 1.23438 1.22216 0.98540 0.83753 1.02950 1.18045 0.79733 0.85995 0.83153 1.90760 1.54048 1.19587 1.77705 1.20258 0.96877 0.97718 0.97081 1.22440 1.00130 0.93420 0.94809 1.21347 0.97949 1.02294 0.94685 1.18390 0.94039 0.93194 0.86141 1.84786 1.68108 1.50641 1.26297 1.21236 0.93160 1.00313 0.95376 1.98364 1.41155 1.88734 1.74771 1.21104 0.95635 0.98222 0.91313 0.95044 0.96923 0.88645 0.92613 0.93028 0.91381 0.89902 0.81877 0.84043 0.75042 0.83414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.39 8.97 37.16 0.33 -3.06 16 2 C 0.26 6.40 2.63 -69.09 -0.18 6.22 16 3 H 0.06 1.88 6.92 -51.93 -0.36 1.52 16 4 C -0.53 -13.89 8.02 -34.45 -0.28 -14.17 16 5 H 0.06 1.56 7.28 -52.48 -0.38 1.18 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -24.64 11.32 55.43 0.63 -24.01 16 8 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 12 N -0.58 -12.02 2.75 -176.47 -0.49 -12.51 16 13 C 0.07 1.06 7.67 59.85 0.46 1.52 16 14 C 0.54 11.25 7.51 -12.44 -0.09 11.15 16 15 O -0.54 -13.37 15.88 5.29 0.08 -13.29 16 16 C -0.12 -1.85 5.57 -104.96 -0.58 -2.43 16 17 C -0.09 -1.12 7.60 -39.22 -0.30 -1.42 16 18 C -0.14 -1.52 9.97 -39.50 -0.39 -1.91 16 19 C 0.13 1.46 6.71 -38.99 -0.26 1.20 16 20 O -0.49 -4.62 12.94 -18.89 -0.24 -4.87 16 21 C -0.07 -0.95 6.32 -39.42 -0.25 -1.20 16 22 Cl -0.06 -0.71 28.49 -51.86 -1.48 -2.19 16 23 C -0.04 -0.65 9.36 -39.18 -0.37 -1.01 16 24 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16 25 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 26 H 0.10 2.44 6.07 -51.93 -0.32 2.12 16 27 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 28 H 0.05 0.67 6.98 -51.92 -0.36 0.31 16 29 H 0.07 0.88 5.27 -51.93 -0.27 0.60 16 30 H 0.08 1.37 6.98 -51.93 -0.36 1.01 16 31 H 0.16 1.82 4.02 -52.49 -0.21 1.60 16 32 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 33 H 0.39 1.90 9.06 45.56 0.41 2.32 16 34 H 0.15 2.31 7.78 -52.49 -0.41 1.90 16 LS Contribution 300.40 15.07 4.53 4.53 Total: -1.00 -31.47 300.40 -6.64 -38.11 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -2.64 Total: 2.06 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: -2.01 Total: -3.46 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: 0.14 Total: -36.52 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: -0.16 Total: -18.16 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.48 Total: -2.19 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.47 -6.64 -38.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063094099.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.940 kcal (2) G-P(sol) polarization free energy of solvation -31.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds