Wall clock time and date at job start Tue Mar 31 2020 05:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47128 * 2 1 4 4 C 1.50699 * 109.47066 * 239.99599 * 2 1 3 5 5 H 1.07999 * 119.99847 * 240.00105 * 4 2 1 6 6 C 1.37875 * 119.99875 * 60.00018 * 4 2 1 7 7 N 1.31518 * 120.00355 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99955 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47091 * 180.02562 * 8 6 4 10 10 H 1.48496 * 109.47140 * 300.00433 * 8 6 4 11 11 H 1.48501 * 109.46858 * 60.00451 * 8 6 4 12 12 N 1.46504 * 109.47222 * 119.99719 * 2 1 3 13 13 C 1.46500 * 119.99779 * 59.99562 * 12 2 1 14 14 C 1.34771 * 120.00311 * 240.00438 * 12 2 1 15 15 O 1.21588 * 119.99965 * 6.95555 * 14 12 2 16 16 C 1.47605 * 120.00076 * 186.96403 * 14 12 2 17 17 C 1.39740 * 120.08431 * 20.38426 * 16 14 12 18 18 C 1.37702 * 119.92979 * 179.76735 * 17 16 14 19 19 C 1.38975 * 120.10810 * 0.50786 * 18 17 16 20 20 O 1.35723 * 119.92046 * 179.71987 * 19 18 17 21 21 C 1.39082 * 120.16211 * 359.74309 * 19 18 17 22 22 Cl 1.73606 * 119.96188 * 179.97438 * 21 19 18 23 23 C 1.37817 * 120.06843 * 0.02562 * 21 19 18 24 24 H 1.08995 * 109.47588 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46851 * 300.00774 * 1 2 3 26 26 H 1.09002 * 109.46912 * 60.00096 * 1 2 3 27 27 H 0.96996 * 120.00051 * 179.97438 * 7 6 4 28 28 H 1.08997 * 109.46893 * 86.47209 * 13 12 2 29 29 H 1.08997 * 109.47270 * 206.47032 * 13 12 2 30 30 H 1.09000 * 109.47382 * 326.47356 * 13 12 2 31 31 H 1.07997 * 120.03365 * 0.02564 * 17 16 14 32 32 H 1.08002 * 119.94881 * 180.25592 * 18 17 16 33 33 H 0.96699 * 114.00248 * 270.02486 * 20 19 18 34 34 H 1.08000 * 120.04896 * 180.02562 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6035 8 14 2.3225 -1.1198 -4.0079 9 1 1.8279 -0.4195 -5.2204 10 1 3.8074 -1.1193 -4.0076 11 1 1.8279 -2.5200 -4.0080 12 7 2.0184 -0.6906 1.1962 13 6 1.6644 -2.0931 1.4281 14 6 2.7931 -0.0356 2.0834 15 8 2.9831 1.1589 1.9591 16 6 3.4112 -0.7683 3.2058 17 6 3.5648 -2.1555 3.1368 18 6 4.1462 -2.8354 4.1837 19 6 4.5707 -2.1454 5.3129 20 8 5.1380 -2.8200 6.3449 21 6 4.4151 -0.7654 5.3883 22 17 4.9466 0.0912 6.8016 23 6 3.8385 -0.0774 4.3425 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5140 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 0.7095 1.1616 -3.4845 28 1 2.3809 -2.7376 0.9189 29 1 1.6850 -2.3009 2.4979 30 1 0.6639 -2.2843 1.0401 31 1 3.2317 -2.6934 2.2615 32 1 4.2688 -3.9070 4.1289 33 1 4.5061 -3.1253 7.0101 34 1 3.7182 0.9943 4.4012 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063094101.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:11 Heat of formation + Delta-G solvation = -34.694246 kcal Electronic energy + Delta-G solvation = -19853.244631 eV Core-core repulsion = 16585.397280 eV Total energy + Delta-G solvation = -3267.847352 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.37844 -38.88775 -36.74983 -36.42134 -35.55487 -33.07021 -31.07069 -30.52031 -28.74943 -26.63502 -25.27591 -23.72231 -22.82699 -21.17051 -19.13869 -18.65471 -17.14485 -16.53356 -16.15634 -15.82183 -15.30726 -14.91072 -14.55922 -14.42770 -13.89360 -13.47340 -13.08444 -12.97644 -12.61032 -12.39069 -12.15118 -11.79137 -11.58829 -11.35253 -11.12185 -11.01972 -10.87599 -10.75094 -10.51126 -10.31834 -10.19719 -9.26592 -9.17731 -9.05793 -8.68488 -8.47844 -7.70574 -6.12035 -4.20985 0.66146 1.03925 1.96471 2.95623 3.24964 3.30715 3.32004 3.74619 3.83799 3.89364 4.35456 4.64491 4.80406 5.01543 5.16427 5.19256 5.31139 5.56184 5.66742 5.85775 5.87694 6.00431 6.15082 6.19845 6.42943 6.71366 6.76975 6.99130 7.30308 7.33270 7.44103 7.64989 7.95166 8.11587 8.39915 8.73688 8.91094 9.45726 10.93203 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.030616 B = 0.004060 C = 0.003852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.324413 B = 6895.495400 C = 7266.882201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.258 3.742 3 H 0.065 0.935 4 C -0.529 4.529 5 H 0.059 0.941 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.900 3.100 9 H -0.286 1.286 10 H -0.277 1.277 11 H -0.276 1.276 12 N -0.583 5.583 13 C 0.072 3.928 14 C 0.545 3.455 15 O -0.544 6.544 16 C -0.116 4.116 17 C -0.089 4.089 18 C -0.144 4.144 19 C 0.128 3.872 20 O -0.487 6.487 21 C -0.074 4.074 22 Cl -0.060 7.060 23 C -0.044 4.044 24 H 0.031 0.969 25 H 0.013 0.987 26 H 0.095 0.905 27 H 0.265 0.735 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.165 0.835 32 H 0.142 0.858 33 H 0.392 0.608 34 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.853 -8.769 15.586 18.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.158 3.842 3 H 0.083 0.917 4 C -0.568 4.568 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.524 5.524 8 Si 0.727 3.273 9 H -0.211 1.211 10 H -0.202 1.202 11 H -0.202 1.202 12 N -0.313 5.313 13 C -0.072 4.072 14 C 0.332 3.668 15 O -0.423 6.423 16 C -0.119 4.119 17 C -0.107 4.107 18 C -0.163 4.163 19 C 0.082 3.918 20 O -0.298 6.298 21 C -0.101 4.101 22 Cl -0.031 7.031 23 C -0.063 4.063 24 H 0.050 0.950 25 H 0.032 0.968 26 H 0.113 0.887 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.182 0.818 32 H 0.160 0.840 33 H 0.249 0.751 34 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 3.399 -7.827 15.158 17.394 hybrid contribution -0.013 -0.604 -0.464 0.762 sum 3.386 -8.432 14.693 17.276 Atomic orbital electron populations 1.22095 0.98032 0.99437 1.01030 1.19018 0.91116 0.94551 0.79471 0.91699 1.21251 1.32170 1.13162 0.90194 0.92266 1.24887 0.94861 0.94950 0.98973 1.69866 1.36121 1.22457 1.23988 0.86536 0.79267 0.79548 0.81922 1.21130 1.20212 1.20195 1.48152 1.48250 1.11664 1.23251 1.22184 1.01743 0.83479 0.99753 1.18027 0.79828 0.86870 0.82068 1.90755 1.62138 1.14401 1.75036 1.20249 1.02141 0.93896 0.95658 1.22464 0.94923 0.93643 0.99656 1.21355 1.00178 1.00992 0.93726 1.18393 0.95383 0.88180 0.89799 1.84790 1.36382 1.74266 1.34358 1.21234 1.05159 0.92147 0.91581 1.98364 1.89025 1.76758 1.38930 1.21092 0.93933 1.01184 0.90134 0.95028 0.96826 0.88679 0.92531 0.92375 0.91502 0.90747 0.81773 0.84026 0.75083 0.83452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 8.94 37.16 0.33 -3.10 16 2 C 0.26 6.43 2.63 -69.08 -0.18 6.25 16 3 H 0.07 1.89 6.92 -51.93 -0.36 1.53 16 4 C -0.53 -13.88 8.37 -34.44 -0.29 -14.17 16 5 H 0.06 1.51 7.55 -52.49 -0.40 1.11 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -24.60 11.32 55.43 0.63 -23.98 16 8 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16 9 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 12 N -0.58 -12.03 2.75 -176.47 -0.49 -12.52 16 13 C 0.07 1.11 7.91 59.85 0.47 1.58 16 14 C 0.55 11.28 7.51 -12.44 -0.09 11.18 16 15 O -0.54 -13.36 15.88 5.29 0.08 -13.28 16 16 C -0.12 -1.86 5.57 -104.96 -0.58 -2.44 16 17 C -0.09 -1.14 7.60 -39.22 -0.30 -1.44 16 18 C -0.14 -1.55 9.97 -39.50 -0.39 -1.94 16 19 C 0.13 1.47 6.71 -39.00 -0.26 1.21 16 20 O -0.49 -4.66 12.94 -18.88 -0.24 -4.91 16 21 C -0.07 -0.96 6.33 -39.42 -0.25 -1.21 16 22 Cl -0.06 -0.71 28.49 -51.86 -1.48 -2.19 16 23 C -0.04 -0.65 9.36 -39.18 -0.37 -1.02 16 24 H 0.03 0.67 6.68 -51.93 -0.35 0.32 16 25 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 27 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 28 H 0.06 0.83 6.88 -51.93 -0.36 0.48 16 29 H 0.07 0.83 5.26 -51.93 -0.27 0.56 16 30 H 0.07 1.16 6.44 -51.93 -0.33 0.82 16 31 H 0.17 1.94 4.02 -52.49 -0.21 1.73 16 32 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 33 H 0.39 1.89 9.06 45.56 0.41 2.30 16 34 H 0.15 2.26 7.78 -52.49 -0.41 1.85 16 LS Contribution 299.60 15.07 4.51 4.51 Total: -1.00 -31.39 299.60 -6.58 -37.97 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -2.57 Total: 2.26 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: -2.01 Total: -3.43 kcal Atomic # 7 Polarization: -36.64 SS G_CDS: 0.14 Total: -36.50 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: -0.16 Total: -18.19 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.48 Total: -2.19 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.39 -6.58 -37.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063094101.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.276 kcal (2) G-P(sol) polarization free energy of solvation -31.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds