Wall clock time and date at job start Tue Mar 31 2020 05:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47284 * 2 1 4 4 C 1.50706 * 109.46848 * 120.00078 * 2 1 3 5 5 H 1.08007 * 119.99955 * 120.00213 * 4 2 1 6 6 C 1.37877 * 119.99908 * 299.99845 * 4 2 1 7 7 N 1.31515 * 119.99938 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99814 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46935 * 90.00243 * 8 6 4 10 10 H 1.48506 * 109.46605 * 209.99899 * 8 6 4 11 11 H 1.48489 * 109.47105 * 329.99923 * 8 6 4 12 12 N 1.46502 * 109.47215 * 239.99849 * 2 1 3 13 13 C 1.46505 * 120.00241 * 300.00000 * 12 2 1 14 14 C 1.34779 * 119.99942 * 120.00324 * 12 2 1 15 15 O 1.21591 * 119.99783 * 4.45504 * 14 12 2 16 16 C 1.47476 * 119.99987 * 184.45130 * 14 12 2 17 17 C 1.39747 * 120.17969 * 310.72368 * 16 14 12 18 18 C 1.37727 * 119.92156 * 179.74783 * 17 16 14 19 19 C 1.38703 * 120.28534 * 0.22950 * 18 17 16 20 20 Cl 1.73599 * 119.81685 * 180.02562 * 19 18 17 21 21 C 1.38203 * 120.36529 * 0.04000 * 19 18 17 22 22 C 1.38643 * 120.07046 * 0.02562 * 21 19 18 23 23 O 1.35658 * 120.14504 * 179.97438 * 22 21 19 24 24 H 1.08998 * 109.46501 * 60.00232 * 1 2 3 25 25 H 1.09003 * 109.47140 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47051 * 300.00144 * 1 2 3 27 27 H 0.96996 * 119.99994 * 180.02562 * 7 6 4 28 28 H 1.09003 * 109.47084 * 273.11493 * 13 12 2 29 29 H 1.09006 * 109.46457 * 33.11080 * 13 12 2 30 30 H 1.08993 * 109.47431 * 153.10653 * 13 12 2 31 31 H 1.08004 * 120.04094 * 0.02562 * 17 16 14 32 32 H 1.07999 * 119.85451 * 180.25839 * 18 17 16 33 33 H 1.07994 * 119.96506 * 179.97438 * 21 19 18 34 34 H 0.96696 * 113.99765 * 90.00220 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6533 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4828 7 7 0.9427 0.8296 2.6034 8 14 2.3224 -1.1196 4.0080 9 1 3.6304 -0.5440 4.4119 10 1 1.3442 -0.9489 5.1123 11 1 2.4878 -2.5653 3.7123 12 7 2.0184 -0.6906 -1.1962 13 6 1.6645 -2.0933 -1.4280 14 6 2.7933 -0.0357 -2.0833 15 8 3.1540 1.1022 -1.8517 16 6 3.2038 -0.6991 -3.3348 17 6 3.7517 -1.9842 -3.3017 18 6 4.1285 -2.6009 -4.4742 19 6 3.9709 -1.9500 -5.6888 20 17 4.4492 -2.7389 -7.1593 21 6 3.4354 -0.6767 -5.7348 22 6 3.0524 -0.0414 -4.5635 23 8 2.5271 1.2086 -4.6069 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.7087 1.1613 3.4843 28 1 2.3853 -2.7378 -0.9249 29 1 0.6669 -2.2862 -1.0333 30 1 1.6778 -2.2993 -2.4982 31 1 3.8755 -2.4951 -2.3582 32 1 4.5479 -3.5957 -4.4477 33 1 3.3160 -0.1758 -6.6840 34 1 1.5647 1.2278 -4.6982 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063094271.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:23 Heat of formation + Delta-G solvation = -51.404975 kcal Electronic energy + Delta-G solvation = -20043.491265 eV Core-core repulsion = 16774.919282 eV Total energy + Delta-G solvation = -3268.571983 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.37163 -38.38797 -37.24221 -36.23171 -35.32534 -32.99568 -31.24756 -30.05918 -29.02068 -26.29887 -25.26497 -23.83353 -22.86578 -21.13525 -19.09288 -18.25330 -16.93847 -16.51921 -16.32434 -15.91649 -15.46468 -14.72682 -14.58485 -14.24338 -13.94549 -13.38450 -13.29404 -12.71927 -12.63878 -12.42139 -12.06747 -11.79174 -11.60119 -11.30130 -11.10043 -11.07754 -10.85819 -10.82881 -10.72329 -10.28405 -10.19953 -9.23120 -9.16747 -9.00868 -8.70655 -8.45400 -7.65812 -6.10187 -4.18373 0.71408 1.01897 1.84112 3.03945 3.25672 3.32428 3.33656 3.56966 3.83247 4.07916 4.37207 4.62587 4.83911 4.91136 5.16828 5.21337 5.33520 5.58629 5.67561 5.87416 5.97117 5.98352 6.14191 6.22678 6.39844 6.70557 6.76147 6.99413 7.35897 7.45833 7.58921 7.67157 7.96671 8.14592 8.43669 8.78348 8.96260 9.48200 10.95207 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.030105 B = 0.004208 C = 0.003910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.853193 B = 6651.625657 C = 7158.544321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.258 3.742 3 H 0.064 0.936 4 C -0.526 4.526 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.586 5.586 13 C 0.081 3.919 14 C 0.543 3.457 15 O -0.527 6.527 16 C -0.135 4.135 17 C -0.062 4.062 18 C -0.127 4.127 19 C -0.009 4.009 20 Cl -0.069 7.069 21 C -0.146 4.146 22 C 0.164 3.836 23 O -0.477 6.477 24 H 0.011 0.989 25 H 0.031 0.969 26 H 0.095 0.905 27 H 0.264 0.736 28 H 0.052 0.948 29 H 0.072 0.928 30 H 0.056 0.944 31 H 0.146 0.854 32 H 0.140 0.860 33 H 0.142 0.858 34 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.582 -8.323 -16.026 18.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.158 3.842 3 H 0.082 0.918 4 C -0.565 4.565 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.526 5.526 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.317 5.317 13 C -0.063 4.063 14 C 0.329 3.671 15 O -0.404 6.404 16 C -0.139 4.139 17 C -0.081 4.081 18 C -0.145 4.145 19 C -0.036 4.036 20 Cl -0.040 7.040 21 C -0.165 4.165 22 C 0.118 3.882 23 O -0.287 6.287 24 H 0.030 0.970 25 H 0.050 0.950 26 H 0.113 0.887 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.164 0.836 32 H 0.158 0.842 33 H 0.160 0.840 34 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 2.273 -7.477 -15.790 17.618 hybrid contribution -0.121 -0.778 0.687 1.045 sum 2.152 -8.255 -15.103 17.346 Atomic orbital electron populations 1.22101 0.98090 0.99430 1.00918 1.18987 0.90873 0.94556 0.79760 0.91779 1.21292 1.31912 1.13035 0.90217 0.92257 1.24889 0.94893 0.94978 0.98979 1.69870 1.36266 1.22613 1.23827 0.86484 0.78689 0.79832 0.82319 1.20577 1.21109 1.19916 1.48217 1.48552 1.11627 1.23308 1.21757 1.01783 0.83199 0.99530 1.17958 0.80061 0.86144 0.82937 1.90798 1.54718 1.17980 1.76913 1.20823 1.03168 0.94962 0.94957 1.21351 0.95136 0.92799 0.98790 1.20980 1.02178 1.01148 0.90234 1.20818 1.01361 0.93729 0.87689 1.98373 1.90376 1.80130 1.35106 1.21205 1.02700 0.93648 0.98968 1.18204 0.95925 0.84059 0.90054 1.84838 1.26317 1.22105 1.95435 0.96998 0.95027 0.88657 0.92635 0.92980 0.90913 0.92535 0.83643 0.84241 0.83974 0.74899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.41 8.94 37.16 0.33 -3.08 16 2 C 0.26 6.47 2.63 -69.08 -0.18 6.29 16 3 H 0.06 1.88 6.91 -51.93 -0.36 1.52 16 4 C -0.53 -13.99 8.37 -34.44 -0.29 -14.27 16 5 H 0.06 1.55 7.56 -52.48 -0.40 1.15 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -24.81 11.32 55.43 0.63 -24.19 16 8 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 9 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 12 N -0.59 -12.19 2.75 -176.51 -0.49 -12.67 16 13 C 0.08 1.30 8.36 59.85 0.50 1.80 16 14 C 0.54 11.35 6.95 -12.50 -0.09 11.27 16 15 O -0.53 -13.40 15.87 -4.08 -0.06 -13.46 16 16 C -0.14 -2.17 4.90 -104.84 -0.51 -2.69 16 17 C -0.06 -0.81 7.61 -39.20 -0.30 -1.10 16 18 C -0.13 -1.38 9.80 -39.60 -0.39 -1.76 16 19 C -0.01 -0.10 6.32 -39.42 -0.25 -0.35 16 20 Cl -0.07 -0.67 28.94 -51.86 -1.50 -2.17 16 21 C -0.15 -1.72 9.75 -39.44 -0.38 -2.11 16 22 C 0.16 2.37 6.69 -38.70 -0.26 2.11 16 23 O -0.48 -7.02 12.54 -28.04 -0.35 -7.38 16 24 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 25 H 0.03 0.67 6.68 -51.93 -0.35 0.32 16 26 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16 27 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 28 H 0.05 0.80 7.48 -51.93 -0.39 0.41 16 29 H 0.07 1.17 6.44 -51.93 -0.33 0.84 16 30 H 0.06 0.74 5.68 -51.93 -0.29 0.45 16 31 H 0.15 1.78 6.59 -52.48 -0.35 1.43 16 32 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 33 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 34 H 0.39 3.95 9.06 45.56 0.41 4.37 16 LS Contribution 302.93 15.07 4.57 4.57 Total: -1.00 -32.06 302.93 -6.91 -38.97 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -2.77 Total: 2.80 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: -1.91 Total: -2.23 kcal Atomic # 7 Polarization: -37.00 SS G_CDS: 0.14 Total: -36.86 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: -0.42 Total: -20.84 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.50 Total: -2.17 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -32.06 -6.91 -38.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063094271.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.435 kcal (2) G-P(sol) polarization free energy of solvation -32.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds