Wall clock time and date at job start Tue Mar 31 2020 05:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47284 * 2 1 4 4 C 1.50706 * 109.46848 * 120.00078 * 2 1 3 5 5 H 1.08007 * 119.99955 * 120.00213 * 4 2 1 6 6 C 1.37877 * 119.99908 * 299.99845 * 4 2 1 7 7 N 1.31515 * 119.99938 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99814 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46935 * 90.00243 * 8 6 4 10 10 H 1.48506 * 109.46605 * 209.99899 * 8 6 4 11 11 H 1.48489 * 109.47105 * 329.99923 * 8 6 4 12 12 N 1.46502 * 109.47215 * 239.99849 * 2 1 3 13 13 C 1.46505 * 120.00241 * 300.00000 * 12 2 1 14 14 C 1.34779 * 119.99942 * 120.00324 * 12 2 1 15 15 O 1.21591 * 119.99783 * 4.45504 * 14 12 2 16 16 C 1.47476 * 119.99987 * 184.45130 * 14 12 2 17 17 C 1.39747 * 120.17969 * 310.72368 * 16 14 12 18 18 C 1.37727 * 119.92156 * 179.74783 * 17 16 14 19 19 C 1.38703 * 120.28534 * 0.22950 * 18 17 16 20 20 Cl 1.73599 * 119.81685 * 180.02562 * 19 18 17 21 21 C 1.38203 * 120.36529 * 0.04000 * 19 18 17 22 22 C 1.38643 * 120.07046 * 0.02562 * 21 19 18 23 23 O 1.35658 * 120.14504 * 179.97438 * 22 21 19 24 24 H 1.08998 * 109.46501 * 60.00232 * 1 2 3 25 25 H 1.09003 * 109.47140 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47051 * 300.00144 * 1 2 3 27 27 H 0.96996 * 119.99994 * 180.02562 * 7 6 4 28 28 H 1.09003 * 109.47084 * 273.11493 * 13 12 2 29 29 H 1.09006 * 109.46457 * 33.11080 * 13 12 2 30 30 H 1.08993 * 109.47431 * 153.10653 * 13 12 2 31 31 H 1.08004 * 120.04094 * 0.02562 * 17 16 14 32 32 H 1.07999 * 119.85451 * 180.25839 * 18 17 16 33 33 H 1.07994 * 119.96506 * 179.97438 * 21 19 18 34 34 H 0.96696 * 113.99765 * 90.00220 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6533 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4828 7 7 0.9427 0.8296 2.6034 8 14 2.3224 -1.1196 4.0080 9 1 3.6304 -0.5440 4.4119 10 1 1.3442 -0.9489 5.1123 11 1 2.4878 -2.5653 3.7123 12 7 2.0184 -0.6906 -1.1962 13 6 1.6645 -2.0933 -1.4280 14 6 2.7933 -0.0357 -2.0833 15 8 3.1540 1.1022 -1.8517 16 6 3.2038 -0.6991 -3.3348 17 6 3.7517 -1.9842 -3.3017 18 6 4.1285 -2.6009 -4.4742 19 6 3.9709 -1.9500 -5.6888 20 17 4.4492 -2.7389 -7.1593 21 6 3.4354 -0.6767 -5.7348 22 6 3.0524 -0.0414 -4.5635 23 8 2.5271 1.2086 -4.6069 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.7087 1.1613 3.4843 28 1 2.3853 -2.7378 -0.9249 29 1 0.6669 -2.2862 -1.0333 30 1 1.6778 -2.2993 -2.4982 31 1 3.8755 -2.4951 -2.3582 32 1 4.5479 -3.5957 -4.4477 33 1 3.3160 -0.1758 -6.6840 34 1 1.5647 1.2278 -4.6982 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063094271.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:23 Heat of formation + Delta-G solvation = -72.960969 kcal Electronic energy + Delta-G solvation = -20044.426004 eV Core-core repulsion = 16774.919282 eV Total energy + Delta-G solvation = -3269.506721 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.61687 -39.80998 -38.21841 -37.22632 -37.06380 -34.85029 -32.59041 -31.17086 -30.60276 -27.74027 -27.30012 -25.13640 -23.87532 -22.70685 -20.56753 -19.41156 -18.58647 -18.11086 -17.58180 -17.18472 -16.97679 -16.32761 -15.80765 -15.73008 -15.12087 -14.82581 -14.45348 -14.25056 -14.01667 -13.73294 -13.48055 -13.14013 -13.10894 -12.93566 -12.71480 -12.65449 -12.26159 -12.18416 -12.09748 -11.97208 -11.87262 -11.18922 -10.78310 -10.51643 -10.00688 -9.76031 -9.36365 -8.14579 -6.31273 -0.34053 0.07159 0.96523 1.42183 1.43824 1.53383 1.71268 2.22115 2.39469 2.49700 3.09042 3.13779 3.57024 3.70479 3.98293 4.17855 4.32872 4.40520 4.64880 4.69291 4.77078 4.87487 4.92102 4.99917 5.02661 5.05173 5.14112 5.45509 5.45913 5.60907 5.65668 6.01890 6.14992 6.65707 6.74472 6.76336 7.26849 7.43835 8.89897 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.030105 B = 0.004208 C = 0.003910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.853193 B = 6651.625657 C = 7158.544321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.261 3.739 3 H 0.008 0.992 4 C -0.538 4.538 5 H 0.063 0.937 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.965 3.035 9 H -0.284 1.284 10 H -0.281 1.281 11 H -0.259 1.259 12 N -0.590 5.590 13 C 0.079 3.921 14 C 0.540 3.460 15 O -0.589 6.589 16 C -0.162 4.162 17 C -0.058 4.058 18 C -0.113 4.113 19 C -0.002 4.002 20 Cl -0.048 7.048 21 C -0.139 4.139 22 C 0.155 3.845 23 O -0.499 6.499 24 H 0.022 0.978 25 H 0.050 0.950 26 H 0.068 0.932 27 H 0.264 0.736 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.153 0.847 32 H 0.172 0.828 33 H 0.162 0.838 34 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.190 -11.328 -17.551 21.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.159 3.841 3 H 0.026 0.974 4 C -0.577 4.577 5 H 0.081 0.919 6 C -0.184 4.184 7 N -0.557 5.557 8 Si 0.790 3.210 9 H -0.210 1.210 10 H -0.206 1.206 11 H -0.183 1.183 12 N -0.320 5.320 13 C -0.063 4.063 14 C 0.329 3.671 15 O -0.470 6.470 16 C -0.166 4.166 17 C -0.077 4.077 18 C -0.131 4.131 19 C -0.029 4.029 20 Cl -0.019 7.019 21 C -0.158 4.158 22 C 0.109 3.891 23 O -0.312 6.312 24 H 0.041 0.959 25 H 0.069 0.931 26 H 0.087 0.913 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.109 0.891 31 H 0.171 0.829 32 H 0.190 0.810 33 H 0.179 0.821 34 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 2.859 -10.537 -17.345 20.495 hybrid contribution -0.281 0.142 1.025 1.072 sum 2.579 -10.394 -16.321 19.521 Atomic orbital electron populations 1.21879 0.96788 1.00310 1.00105 1.18587 0.91807 0.92158 0.81508 0.97430 1.21573 1.31957 1.13131 0.91032 0.91917 1.25737 0.95033 0.95640 1.02038 1.70018 1.37275 1.23935 1.24452 0.85455 0.77699 0.79328 0.78537 1.21011 1.20596 1.18302 1.48176 1.48340 1.13384 1.22083 1.22006 1.01947 0.80353 1.02016 1.18678 0.78877 0.85491 0.84099 1.90750 1.57031 1.20850 1.78414 1.20509 1.06523 0.96636 0.92906 1.21412 0.94698 0.91449 1.00127 1.21252 1.00695 1.02102 0.89051 1.20973 0.99909 0.93408 0.88660 1.98393 1.90016 1.79609 1.33906 1.21310 1.01916 0.93914 0.98647 1.18371 0.96416 0.83916 0.90418 1.84788 1.27914 1.22920 1.95536 0.95941 0.93116 0.91292 0.92637 0.91848 0.90900 0.89138 0.82905 0.81013 0.82057 0.73124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.28 8.94 71.98 0.64 -5.64 16 2 C 0.26 13.59 2.63 44.25 0.12 13.70 16 3 H 0.01 0.49 6.91 -2.39 -0.02 0.47 16 4 C -0.54 -29.08 8.37 25.60 0.21 -28.87 16 5 H 0.06 3.26 7.56 -2.91 -0.02 3.23 16 6 C 0.02 0.82 5.30 84.65 0.45 1.27 16 7 N -0.92 -52.83 11.32 21.45 0.24 -52.59 16 8 Si 0.96 42.72 29.54 68.60 2.03 44.74 16 9 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 10 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 11 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 12 N -0.59 -24.90 2.75 -830.61 -2.29 -27.19 16 13 C 0.08 2.41 8.36 127.77 1.07 3.47 16 14 C 0.54 23.24 6.95 86.68 0.60 23.85 16 15 O -0.59 -31.82 15.87 4.95 0.08 -31.74 16 16 C -0.16 -5.10 4.90 -20.01 -0.10 -5.20 16 17 C -0.06 -1.37 7.61 22.51 0.17 -1.20 16 18 C -0.11 -2.00 9.80 22.26 0.22 -1.79 16 19 C 0.00 -0.04 6.32 22.37 0.14 0.10 16 20 Cl -0.05 -0.75 28.94 -2.72 -0.08 -0.83 16 21 C -0.14 -2.93 9.75 22.36 0.22 -2.71 16 22 C 0.16 4.36 6.69 22.84 0.15 4.51 16 23 O -0.50 -14.91 12.54 -80.78 -1.01 -15.92 16 24 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.05 2.15 6.68 -2.39 -0.02 2.14 16 26 H 0.07 3.66 6.07 -2.39 -0.01 3.64 16 27 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 28 H 0.06 1.80 7.48 -2.39 -0.02 1.78 16 29 H 0.07 2.22 6.44 -2.38 -0.02 2.20 16 30 H 0.09 2.14 5.68 -2.39 -0.01 2.13 16 31 H 0.15 3.33 6.59 -2.91 -0.02 3.31 16 32 H 0.17 1.98 8.06 -2.91 -0.02 1.96 16 33 H 0.16 2.73 8.06 -2.91 -0.02 2.71 16 34 H 0.41 8.43 9.06 -74.06 -0.67 7.76 16 Total: -1.00 -72.87 302.93 3.34 -69.52 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: 0.48 Total: 12.50 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: 3.90 Total: 1.50 kcal Atomic # 7 Polarization: -77.73 SS G_CDS: -2.04 Total: -79.78 kcal Atomic # 8 Polarization: -46.72 SS G_CDS: -0.93 Total: -47.66 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.74 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -0.08 Total: -0.83 kcal Total: -72.87 3.34 -69.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063094271.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.437 kcal (2) G-P(sol) polarization free energy of solvation -72.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds