Wall clock time and date at job start Tue Mar 31 2020 05:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.47190 * 2 1 4 4 C 1.50693 * 109.47058 * 120.00237 * 2 1 3 5 5 H 1.08005 * 120.00291 * 114.36412 * 4 2 1 6 6 C 1.37881 * 120.00259 * 294.36743 * 4 2 1 7 7 N 1.31514 * 120.00212 * 156.61898 * 6 4 2 8 8 Si 1.86795 * 119.99775 * 336.88788 * 6 4 2 9 9 H 1.48501 * 109.47165 * 179.72704 * 8 6 4 10 10 H 1.48500 * 109.47318 * 299.72681 * 8 6 4 11 11 H 1.48500 * 109.47076 * 59.72783 * 8 6 4 12 12 N 1.46498 * 109.46908 * 240.00405 * 2 1 3 13 13 C 1.34776 * 119.99973 * 85.00105 * 12 2 1 14 14 O 1.21275 * 120.00093 * 0.02562 * 13 12 2 15 15 C 1.50701 * 119.99964 * 179.97438 * 13 12 2 16 16 S 1.81396 * 109.47265 * 180.02562 * 15 13 12 17 17 C 1.76203 * 103.00052 * 179.97438 * 16 15 13 18 18 C 1.38936 * 120.05410 * 359.72676 * 17 16 15 19 19 C 1.38101 * 119.94353 * 179.72336 * 18 17 16 20 20 C 1.38475 * 120.05378 * 0.54730 * 19 18 17 21 21 F 1.35100 * 119.94601 * 179.70560 * 20 19 18 22 22 C 1.38484 * 120.11217 * 359.72454 * 20 19 18 23 23 C 1.38097 * 120.05283 * 0.02562 * 22 20 19 24 24 H 1.09007 * 109.46955 * 53.09808 * 1 2 3 25 25 H 1.08994 * 109.47507 * 173.10064 * 1 2 3 26 26 H 1.09003 * 109.46967 * 293.10580 * 1 2 3 27 27 H 0.97003 * 119.99433 * 355.20223 * 7 6 4 28 28 H 0.96999 * 119.99673 * 264.99382 * 12 2 1 29 29 H 1.09007 * 109.46983 * 299.99861 * 15 13 12 30 30 H 1.08994 * 109.47412 * 59.99878 * 15 13 12 31 31 H 1.08003 * 120.02947 * 359.97438 * 18 17 16 32 32 H 1.07998 * 119.97473 * 180.25125 * 19 18 17 33 33 H 1.07997 * 119.97277 * 179.97438 * 22 20 19 34 34 H 1.07998 * 120.02990 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.5761 -1.6386 1.1339 6 6 1.7976 -0.1756 2.4794 7 7 1.8026 -0.9539 3.5395 8 14 1.4651 1.6531 2.6649 9 1 1.2392 1.9724 4.0975 10 1 2.6331 2.4218 2.1647 11 1 0.2588 2.0190 1.8800 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0181 -2.3571 14 8 1.8590 1.1587 -2.4114 15 6 2.6498 -0.7283 -3.5875 16 16 2.7114 0.4375 -4.9759 17 6 3.3126 -0.5559 -6.3012 18 6 3.6082 -1.8965 -6.0874 19 6 4.0738 -2.6744 -7.1292 20 6 4.2569 -2.1165 -8.3833 21 9 4.7182 -2.8780 -9.3994 22 6 3.9684 -0.7791 -8.5976 23 6 3.4976 0.0017 -7.5604 24 1 -0.3633 0.6171 -0.8218 25 1 -0.3634 -1.0201 -0.1234 26 1 -0.3633 0.4033 0.9453 27 1 1.9020 -1.9133 3.4363 28 1 2.2490 -1.6317 -1.1527 29 1 3.6492 -1.1201 -3.3980 30 1 1.9777 -1.5505 -3.8327 31 1 3.4701 -2.3309 -5.1083 32 1 4.2999 -3.7175 -6.9645 33 1 4.1124 -0.3462 -9.5765 34 1 3.2731 1.0447 -7.7278 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064333312.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:33 Heat of formation + Delta-G solvation = -61.941132 kcal Electronic energy + Delta-G solvation = -18634.756449 eV Core-core repulsion = 15380.144080 eV Total energy + Delta-G solvation = -3254.612369 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.078 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.14734 -39.16652 -39.06868 -35.10817 -32.64429 -31.77593 -31.00158 -30.52615 -28.58026 -24.91965 -23.40796 -23.05989 -21.29376 -19.76711 -18.48685 -17.82671 -17.44132 -16.62735 -16.46664 -15.86436 -15.55793 -15.30591 -14.73436 -14.49320 -13.98446 -13.72703 -13.57488 -13.24618 -13.11062 -12.82368 -12.69094 -12.35741 -12.11354 -11.64709 -11.45141 -11.41450 -10.55326 -10.34066 -10.19129 -9.90517 -9.80621 -9.51669 -9.50787 -9.22960 -8.37940 -8.34463 -7.49593 -6.67128 -4.28759 0.69929 0.86170 1.18582 2.21947 2.95946 3.16911 3.36405 3.42196 3.56757 3.73918 3.96534 4.35043 4.38651 4.50138 4.82418 4.87543 4.95707 4.99380 5.04691 5.20583 5.36327 5.50618 5.77061 5.80834 5.85427 6.30628 6.46703 6.47598 6.58840 6.86497 7.15865 7.26018 7.54594 8.16437 8.27957 8.56896 8.78284 9.37428 10.71550 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.041629 B = 0.003052 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.447065 B = 9170.837814 C = 9599.180020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.245 3.755 3 H 0.042 0.958 4 C -0.628 4.628 5 H 0.063 0.937 6 C 0.047 3.953 7 N -0.888 5.888 8 Si 1.033 2.967 9 H -0.282 1.282 10 H -0.280 1.280 11 H -0.273 1.273 12 N -0.694 5.694 13 C 0.519 3.481 14 O -0.537 6.537 15 C -0.154 4.154 16 S -0.019 6.019 17 C -0.109 4.109 18 C -0.111 4.111 19 C -0.131 4.131 20 C 0.084 3.916 21 F -0.141 7.141 22 C -0.133 4.133 23 C -0.074 4.074 24 H 0.030 0.970 25 H 0.044 0.956 26 H 0.060 0.940 27 H 0.271 0.729 28 H 0.395 0.605 29 H 0.115 0.885 30 H 0.114 0.886 31 H 0.134 0.866 32 H 0.137 0.863 33 H 0.139 0.861 34 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.359 -2.730 -21.389 21.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.141 3.859 3 H 0.060 0.940 4 C -0.665 4.665 5 H 0.081 0.919 6 C -0.161 4.161 7 N -0.520 5.520 8 Si 0.860 3.140 9 H -0.208 1.208 10 H -0.206 1.206 11 H -0.199 1.199 12 N -0.343 5.343 13 C 0.302 3.698 14 O -0.415 6.415 15 C -0.305 4.305 16 S 0.226 5.774 17 C -0.222 4.222 18 C -0.135 4.135 19 C -0.151 4.151 20 C 0.061 3.939 21 F -0.120 7.120 22 C -0.153 4.153 23 C -0.098 4.098 24 H 0.049 0.951 25 H 0.063 0.937 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.228 0.772 29 H 0.133 0.867 30 H 0.132 0.868 31 H 0.152 0.848 32 H 0.155 0.845 33 H 0.157 0.843 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 2.540 0.471 -20.113 20.278 hybrid contribution 0.911 -3.467 -1.314 3.818 sum 3.451 -2.996 -21.427 21.909 Atomic orbital electron populations 1.22435 0.98712 1.00044 1.00354 1.19050 0.90644 0.94192 0.81965 0.93979 1.21989 1.42342 1.11267 0.90928 0.91909 1.25646 0.92867 1.05941 0.91669 1.70876 1.42727 1.06481 1.31867 0.84188 0.77843 0.75607 0.76391 1.20759 1.20567 1.19903 1.46230 1.64725 1.13819 1.09483 1.19453 0.79147 0.87345 0.83886 1.90707 1.50887 1.15447 1.84505 1.23959 1.06749 1.02880 0.96928 1.86312 1.79674 1.12959 0.98460 1.22313 1.03420 0.97421 0.99089 1.21099 1.00415 0.92482 0.99505 1.21054 1.01528 1.01054 0.91498 1.17671 1.01412 0.89617 0.85164 1.91497 1.86479 1.75517 1.58518 1.21073 1.01467 0.92268 1.00523 1.20602 0.98738 1.00214 0.90230 0.95088 0.93731 0.92086 0.91894 0.77202 0.86725 0.86803 0.84833 0.84464 0.84285 0.84325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.45 9.20 37.16 0.34 -3.11 16 2 C 0.24 5.69 2.16 -69.09 -0.15 5.54 16 3 H 0.04 1.07 6.15 -51.93 -0.32 0.75 16 4 C -0.63 -16.47 8.95 -34.44 -0.31 -16.78 16 5 H 0.06 1.71 7.96 -52.48 -0.42 1.29 16 6 C 0.05 1.28 5.19 -17.82 -0.09 1.19 16 7 N -0.89 -25.77 13.70 55.43 0.76 -25.01 16 8 Si 1.03 24.52 26.44 -169.99 -4.50 20.02 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.27 -6.13 6.14 56.52 0.35 -5.78 16 12 N -0.69 -13.17 5.07 -54.94 -0.28 -13.45 16 13 C 0.52 9.28 7.81 -10.98 -0.09 9.19 16 14 O -0.54 -11.66 15.53 5.56 0.09 -11.57 16 15 C -0.15 -1.93 4.82 36.01 0.17 -1.75 16 16 S -0.02 -0.25 21.06 -107.50 -2.26 -2.52 16 17 C -0.11 -1.18 6.11 -39.06 -0.24 -1.42 16 18 C -0.11 -1.07 9.36 -39.37 -0.37 -1.43 16 19 C -0.13 -1.20 10.02 -39.54 -0.40 -1.59 16 20 C 0.08 0.81 7.30 -39.40 -0.29 0.53 16 21 F -0.14 -1.45 17.26 2.25 0.04 -1.42 16 22 C -0.13 -1.17 10.02 -39.54 -0.40 -1.57 16 23 C -0.07 -0.70 9.79 -39.37 -0.39 -1.09 16 24 H 0.03 0.65 8.14 -51.92 -0.42 0.22 16 25 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.06 1.39 5.47 -51.93 -0.28 1.10 16 27 H 0.27 7.75 8.73 -40.82 -0.36 7.40 16 28 H 0.39 6.44 8.53 -40.82 -0.35 6.09 16 29 H 0.11 1.19 7.73 -51.92 -0.40 0.79 16 30 H 0.11 1.14 7.76 -51.93 -0.40 0.74 16 31 H 0.13 1.08 5.88 -52.48 -0.31 0.77 16 32 H 0.14 0.99 8.06 -52.49 -0.42 0.56 16 33 H 0.14 0.92 8.06 -52.49 -0.42 0.49 16 34 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 308.81 15.07 4.65 4.65 Total: -1.00 -30.82 308.81 -7.49 -38.31 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -3.80 Total: 3.26 kcal Atomic # 6 Polarization: -10.10 SS G_CDS: -2.19 Total: -12.29 kcal Atomic # 7 Polarization: -38.94 SS G_CDS: 0.48 Total: -38.46 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: 0.09 Total: -11.57 kcal Atomic # 9 Polarization: -1.45 SS G_CDS: 0.04 Total: -1.42 kcal Atomic # 14 Polarization: 24.52 SS G_CDS: -4.50 Total: 20.02 kcal Atomic # 16 Polarization: -0.25 SS G_CDS: -2.26 Total: -2.52 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.82 -7.49 -38.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064333312.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.627 kcal (2) G-P(sol) polarization free energy of solvation -30.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds