Wall clock time and date at job start Tue Mar 31 2020 05:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34229 * 117.00126 * 2 1 4 4 O 1.20820 * 119.99822 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00033 * 180.02562 * 3 2 1 6 6 N 1.46503 * 109.47052 * 179.97438 * 5 3 2 7 7 C 1.36936 * 120.00176 * 270.40495 * 6 5 3 8 8 H 1.07992 * 120.00351 * 188.06860 * 7 6 5 9 9 C 1.38815 * 119.99470 * 8.07331 * 7 6 5 10 10 N 1.31615 * 120.00242 * 25.10321 * 9 7 6 11 11 Si 1.86800 * 119.99551 * 205.10718 * 9 7 6 12 12 H 1.48498 * 109.47091 * 89.99857 * 11 9 7 13 13 H 1.48504 * 109.47089 * 209.99838 * 11 9 7 14 14 H 1.48499 * 109.47028 * 330.00014 * 11 9 7 15 15 C 1.46498 * 119.99718 * 90.40872 * 6 5 3 16 16 C 1.50698 * 109.47139 * 269.99748 * 15 6 5 17 17 C 1.38267 * 119.99699 * 270.27728 * 16 15 6 18 18 C 1.38211 * 120.02901 * 180.27280 * 17 16 15 19 19 C 1.38237 * 120.01332 * 359.45309 * 18 17 16 20 20 C 1.38325 * 119.98603 * 0.27272 * 19 18 17 21 21 Cl 1.73598 * 120.01507 * 179.97438 * 20 19 18 22 22 C 1.38198 * 119.99488 * 90.00494 * 16 15 6 23 23 H 1.09001 * 109.47158 * 60.00668 * 1 2 3 24 24 H 1.09000 * 109.47089 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47317 * 300.00210 * 1 2 3 26 26 H 1.08996 * 109.47305 * 59.99147 * 5 3 2 27 27 H 1.08999 * 109.47286 * 299.99519 * 5 3 2 28 28 H 0.97003 * 119.99794 * 179.97438 * 10 9 7 29 29 H 1.09005 * 109.47241 * 150.00214 * 15 6 5 30 30 H 1.08996 * 109.47566 * 29.99839 * 15 6 5 31 31 H 1.08008 * 119.98278 * 0.02562 * 17 16 15 32 32 H 1.08006 * 119.99307 * 179.72839 * 18 17 16 33 33 H 1.08003 * 120.01049 * 180.25112 * 19 18 17 34 34 H 1.07998 * 120.00337 * 0.02562 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9817 2.6797 -0.0011 7 6 4.1673 3.3384 -1.1872 8 1 4.5971 4.3291 -1.1932 9 6 3.8030 2.7326 -2.3818 10 7 2.8701 1.8043 -2.3913 11 14 4.6369 3.2351 -3.9761 12 1 5.8342 2.3851 -4.1977 13 1 3.6898 3.0606 -5.1065 14 1 5.0496 4.6591 -3.8914 15 6 4.1985 3.3798 1.2674 16 6 2.9104 4.0228 1.7128 17 6 2.6067 5.3112 1.3135 18 6 1.4281 5.9036 1.7262 19 6 0.5470 5.2041 2.5295 20 6 0.8476 3.9130 2.9247 21 17 -0.2581 3.0342 3.9340 22 6 2.0303 3.3225 2.5159 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 3.9557 0.7808 -0.8907 27 1 3.9564 0.7806 0.8892 28 1 2.6153 1.3812 -3.2262 29 1 4.9603 4.1478 1.1330 30 1 4.5296 2.6679 2.0234 31 1 3.2926 5.8564 0.6819 32 1 1.1935 6.9116 1.4175 33 1 -0.3759 5.6656 2.8487 34 1 2.2658 2.3147 2.8245 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080871464.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:18 Heat of formation + Delta-G solvation = -35.625444 kcal Electronic energy + Delta-G solvation = -20903.020620 eV Core-core repulsion = 17635.132889 eV Total energy + Delta-G solvation = -3267.887731 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.09523 -38.53809 -36.27003 -35.73052 -34.46896 -32.13739 -30.30653 -30.10701 -28.05129 -26.04897 -25.71437 -22.41810 -22.07648 -20.60248 -19.65345 -16.99865 -16.50483 -16.07326 -15.55276 -15.17788 -14.91020 -14.82258 -14.63890 -13.74074 -13.38145 -13.19126 -12.99005 -12.73740 -12.24074 -12.11554 -11.62594 -11.22941 -11.11045 -11.08198 -10.98574 -10.85625 -10.66448 -10.47247 -10.39503 -10.19015 -9.98419 -9.53378 -9.05974 -8.57039 -8.24158 -8.07083 -7.20670 -6.00487 -3.26177 1.80150 1.89957 2.57035 3.31992 3.39212 3.41075 3.94552 4.08705 4.23468 4.46355 5.19367 5.28754 5.38730 5.40229 5.62769 5.84664 5.85787 5.93388 5.95298 5.99608 6.14940 6.27690 6.37894 6.38449 6.51707 6.68135 6.77272 6.90696 7.04029 7.22746 7.43760 7.61268 7.84444 8.06611 8.92994 9.44431 9.64273 10.02338 11.10053 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.018034 B = 0.007282 C = 0.005892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.230311 B = 3844.302735 C = 4750.733420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.385 6.385 3 C 0.461 3.539 4 O -0.491 6.491 5 C 0.185 3.815 6 N -0.557 5.557 7 C -0.252 4.252 8 H 0.083 0.917 9 C 0.003 3.997 10 N -0.897 5.897 11 Si 0.910 3.090 12 H -0.286 1.286 13 H -0.293 1.293 14 H -0.280 1.280 15 C 0.174 3.826 16 C -0.060 4.060 17 C -0.095 4.095 18 C -0.112 4.112 19 C -0.130 4.130 20 C -0.029 4.029 21 Cl -0.097 7.097 22 C -0.088 4.088 23 H 0.051 0.949 24 H 0.077 0.923 25 H 0.045 0.955 26 H 0.115 0.885 27 H 0.051 0.949 28 H 0.258 0.742 29 H 0.068 0.932 30 H 0.054 0.946 31 H 0.120 0.880 32 H 0.119 0.881 33 H 0.118 0.882 34 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.186 1.001 9.034 9.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.303 6.303 3 C 0.300 3.700 4 O -0.375 6.375 5 C 0.056 3.944 6 N -0.275 5.275 7 C -0.380 4.380 8 H 0.101 0.899 9 C -0.196 4.196 10 N -0.542 5.542 11 Si 0.740 3.260 12 H -0.213 1.213 13 H -0.220 1.220 14 H -0.205 1.205 15 C 0.048 3.952 16 C -0.064 4.064 17 C -0.114 4.114 18 C -0.131 4.131 19 C -0.149 4.149 20 C -0.055 4.055 21 Cl -0.068 7.068 22 C -0.108 4.108 23 H 0.069 0.931 24 H 0.096 0.904 25 H 0.063 0.937 26 H 0.132 0.868 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.138 0.862 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -1.528 1.151 8.941 9.143 hybrid contribution -0.631 0.218 -1.125 1.308 sum -2.158 1.370 7.816 8.223 Atomic orbital electron populations 1.22804 0.79981 1.01044 1.01170 1.86529 1.20813 1.37004 1.85936 1.25375 0.93369 0.80370 0.70904 1.90516 1.66357 1.36032 1.44595 1.20566 0.85925 0.86349 1.01532 1.44541 1.74692 1.06937 1.01289 1.19321 1.34497 1.01606 0.82621 0.89873 1.24780 0.97275 0.99387 0.98119 1.69849 1.27631 1.30114 1.26568 0.86149 0.78996 0.78132 0.82694 1.21258 1.21990 1.20495 1.20144 0.91609 0.95379 0.88103 1.20927 0.99409 0.93275 0.92797 1.20986 0.96936 0.95146 0.98307 1.20929 0.94473 0.99604 0.98079 1.20734 1.00137 0.93313 1.00706 1.20742 0.92446 0.93499 0.98805 1.98312 1.63520 1.76732 1.68272 1.20643 0.92721 0.99056 0.98397 0.93061 0.90410 0.93665 0.86768 0.93089 0.93105 0.91414 0.92720 0.86198 0.86289 0.86349 0.86811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.84 10.56 101.05 1.07 1.91 16 2 O -0.38 -8.47 10.56 -39.25 -0.41 -8.88 16 3 C 0.46 10.99 5.80 36.00 0.21 11.20 16 4 O -0.49 -12.94 13.22 -18.75 -0.25 -13.18 16 5 C 0.19 4.17 5.59 -5.19 -0.03 4.14 16 6 N -0.56 -12.71 2.07 -175.99 -0.36 -13.07 16 7 C -0.25 -6.35 9.70 -15.06 -0.15 -6.50 16 8 H 0.08 2.05 7.93 -52.49 -0.42 1.63 16 9 C 0.00 0.07 4.90 -17.43 -0.09 -0.01 16 10 N -0.90 -24.61 8.94 55.49 0.50 -24.11 16 11 Si 0.91 20.89 29.62 -169.99 -5.04 15.85 16 12 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 13 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 14 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 15 C 0.17 3.28 5.83 -5.20 -0.03 3.25 16 16 C -0.06 -1.16 4.49 -104.63 -0.47 -1.63 16 17 C -0.09 -1.75 9.70 -39.58 -0.38 -2.13 16 18 C -0.11 -1.90 10.04 -39.59 -0.40 -2.29 16 19 C -0.13 -2.19 9.83 -39.55 -0.39 -2.58 16 20 C -0.03 -0.51 6.32 -39.50 -0.25 -0.76 16 21 Cl -0.10 -1.55 28.96 -51.86 -1.50 -3.05 16 22 C -0.09 -1.67 7.69 -39.55 -0.30 -1.97 16 23 H 0.05 1.02 8.13 -51.93 -0.42 0.60 16 24 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 25 H 0.04 0.83 8.13 -51.93 -0.42 0.40 16 26 H 0.11 2.79 6.30 -51.93 -0.33 2.46 16 27 H 0.05 0.98 7.89 -51.93 -0.41 0.57 16 28 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.07 1.19 7.97 -51.93 -0.41 0.77 16 30 H 0.05 0.90 7.83 -51.93 -0.41 0.50 16 31 H 0.12 2.12 8.06 -52.48 -0.42 1.69 16 32 H 0.12 1.67 8.06 -52.48 -0.42 1.25 16 33 H 0.12 1.73 8.06 -52.48 -0.42 1.31 16 34 H 0.11 2.10 8.06 -52.49 -0.42 1.67 16 LS Contribution 308.04 15.07 4.64 4.64 Total: -1.00 -29.79 308.04 -7.70 -37.49 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -4.07 Total: 1.71 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: -1.21 Total: 2.61 kcal Atomic # 7 Polarization: -37.31 SS G_CDS: 0.13 Total: -37.18 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: -0.66 Total: -22.07 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.04 Total: 15.85 kcal Atomic # 17 Polarization: -1.55 SS G_CDS: -1.50 Total: -3.05 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.79 -7.70 -37.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080871464.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.867 kcal (2) G-P(sol) polarization free energy of solvation -29.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds