Wall clock time and date at job start Tue Mar 31 2020 05:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47013 * 2 1 4 4 C 1.52994 * 109.46698 * 120.00591 * 2 1 3 5 5 N 1.46500 * 109.46893 * 185.00074 * 4 2 1 6 6 C 1.34786 * 119.99989 * 179.97438 * 5 4 2 7 7 O 1.21680 * 119.99895 * 0.02562 * 6 5 4 8 8 C 1.46373 * 119.99949 * 179.97438 * 6 5 4 9 9 H 1.08005 * 119.99883 * 359.97438 * 8 6 5 10 10 C 1.40045 * 119.99891 * 180.02562 * 8 6 5 11 11 N 1.30675 * 120.00406 * 359.97438 * 10 8 6 12 12 Si 1.86801 * 119.99890 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.47318 * 89.99355 * 12 10 8 14 14 H 1.48501 * 109.46824 * 209.99327 * 12 10 8 15 15 H 1.48495 * 109.47257 * 329.99268 * 12 10 8 16 16 O 1.42903 * 109.47202 * 240.00394 * 2 1 3 17 17 C 1.35924 * 117.00093 * 84.80402 * 16 2 1 18 18 C 1.38719 * 120.03798 * 354.63276 * 17 16 2 19 19 C 1.38147 * 119.95316 * 180.02562 * 18 17 16 20 20 C 1.38371 * 120.04052 * 0.24762 * 19 18 17 21 21 Cl 1.73600 * 119.95489 * 179.72683 * 20 19 18 22 22 C 1.38364 * 120.08484 * 359.49512 * 20 19 18 23 23 C 1.38142 * 120.04391 * 0.50889 * 22 20 19 24 24 H 1.08997 * 109.47314 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47120 * 299.99999 * 1 2 3 26 26 H 1.09003 * 109.46857 * 59.99804 * 1 2 3 27 27 H 1.09003 * 109.47471 * 304.99662 * 4 2 1 28 28 H 1.08998 * 109.47653 * 64.99937 * 4 2 1 29 29 H 0.96999 * 120.00226 * 359.97438 * 5 4 2 30 30 H 0.96997 * 120.00435 * 180.02562 * 11 10 8 31 31 H 1.08000 * 120.02556 * 359.97438 * 18 17 16 32 32 H 1.07996 * 119.98269 * 179.97438 * 19 18 17 33 33 H 1.08000 * 119.97880 * 180.23200 * 22 20 19 34 34 H 1.08001 * 120.02685 * 179.72512 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7214 1.2491 5 7 3.4999 -0.6180 1.3109 6 6 4.1729 -1.1829 2.3331 7 8 3.5677 -1.7791 3.2042 8 6 5.6317 -1.0801 2.3945 9 1 6.1689 -0.5519 1.6205 10 6 6.3310 -1.6675 3.4562 11 7 5.6811 -2.3069 4.3924 12 14 8.1927 -1.5357 3.5350 13 1 8.5710 -0.3132 4.2884 14 1 8.7449 -2.7310 4.2216 15 1 8.7421 -1.4580 2.1576 16 8 2.0064 -0.6736 -1.1668 17 6 2.1087 0.0618 -2.3054 18 6 1.6540 1.3722 -2.3288 19 6 1.7584 2.1179 -3.4871 20 6 2.3113 1.5568 -4.6247 21 17 2.4348 2.4936 -6.0810 22 6 2.7702 0.2517 -4.6016 23 6 2.6675 -0.4972 -3.4453 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.6053 -0.2619 2.1370 28 1 1.7515 -1.7716 1.2055 29 1 3.9824 -0.1431 0.6163 30 1 6.1654 -2.7134 5.1279 31 1 1.2180 1.8089 -1.4425 32 1 1.4042 3.1379 -3.5060 33 1 3.2048 -0.1833 -5.4894 34 1 3.0217 -1.5173 -3.4289 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083393939.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:07 Heat of formation + Delta-G solvation = -65.856610 kcal Electronic energy + Delta-G solvation = -19212.321997 eV Core-core repulsion = 15943.123344 eV Total energy + Delta-G solvation = -3269.198653 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.43331 -38.17993 -37.10120 -36.32964 -33.84806 -32.44608 -31.59049 -30.91479 -29.55920 -26.98836 -24.98430 -23.55805 -22.62121 -20.87967 -19.71094 -18.52009 -17.33422 -16.64859 -16.06247 -15.50566 -15.26495 -14.91444 -14.60500 -13.97635 -13.88299 -13.74516 -13.33838 -13.17100 -12.82996 -12.47219 -12.24411 -12.16977 -11.82490 -11.50882 -11.45026 -11.15847 -11.02467 -10.94379 -10.68309 -10.56132 -10.43331 -10.21047 -9.29859 -8.85544 -8.22076 -7.64167 -7.54656 -6.19202 -4.64400 1.04475 1.08692 2.00874 3.13139 3.14442 3.21245 3.24963 3.46825 4.09841 4.53019 4.58414 4.59537 4.62085 4.82163 4.98750 5.07077 5.17381 5.28766 5.34585 5.55400 5.65170 5.72480 5.74314 5.86054 6.02668 6.06633 6.11267 6.22249 6.39251 6.46727 7.36196 7.43340 7.90011 8.05030 8.31623 9.02282 9.50367 10.58998 10.77207 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.020707 B = 0.003532 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.843665 B = 7925.932821 C = 8930.435601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.071 3.929 3 H 0.077 0.923 4 C 0.139 3.861 5 N -0.766 5.766 6 C 0.555 3.445 7 O -0.582 6.582 8 C -0.545 4.545 9 H 0.067 0.933 10 C 0.087 3.913 11 N -0.768 5.768 12 Si 0.908 3.092 13 H -0.272 1.272 14 H -0.279 1.279 15 H -0.265 1.265 16 O -0.295 6.295 17 C 0.148 3.852 18 C -0.202 4.202 19 C -0.069 4.069 20 C -0.080 4.080 21 Cl -0.080 7.080 22 C -0.070 4.070 23 C -0.143 4.143 24 H 0.071 0.929 25 H 0.076 0.924 26 H 0.062 0.938 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.381 0.619 30 H 0.268 0.732 31 H 0.139 0.861 32 H 0.133 0.867 33 H 0.137 0.863 34 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.130 8.372 -16.842 20.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.015 3.985 3 H 0.095 0.905 4 C 0.013 3.987 5 N -0.422 5.422 6 C 0.359 3.641 7 O -0.465 6.465 8 C -0.582 4.582 9 H 0.085 0.915 10 C -0.132 4.132 11 N -0.397 5.397 12 Si 0.733 3.267 13 H -0.197 1.197 14 H -0.204 1.204 15 H -0.189 1.189 16 O -0.208 6.208 17 C 0.101 3.899 18 C -0.221 4.221 19 C -0.088 4.088 20 C -0.107 4.107 21 Cl -0.051 7.051 22 C -0.088 4.088 23 C -0.161 4.161 24 H 0.090 0.910 25 H 0.095 0.905 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.079 0.921 29 H 0.212 0.788 30 H 0.079 0.921 31 H 0.157 0.843 32 H 0.151 0.849 33 H 0.155 0.845 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -8.538 7.683 -16.083 19.763 hybrid contribution 1.040 0.621 -0.390 1.273 sum -7.497 8.303 -16.474 19.913 Atomic orbital electron populations 1.22320 0.94468 1.03830 1.02867 1.22914 0.94466 0.97101 0.84020 0.90467 1.20992 0.84944 1.00097 0.92633 1.46095 1.04072 1.62528 1.29509 1.18210 0.88273 0.78061 0.79514 1.90597 1.70142 1.45991 1.39742 1.20876 0.90118 1.37344 1.09817 0.91451 1.25708 0.99846 0.93148 0.94528 1.70019 1.36467 1.25013 1.08212 0.86371 0.83060 0.78229 0.79089 1.19743 1.20436 1.18892 1.86277 1.80223 1.38072 1.16271 1.19179 0.93273 0.90131 0.87324 1.21317 1.06831 0.94361 0.99625 1.20809 0.97219 0.99956 0.90784 1.20734 1.07713 0.93565 0.88696 1.98351 1.97167 1.73055 1.36553 1.20837 0.97876 0.91910 0.98220 1.20455 1.03447 1.01644 0.90597 0.90994 0.90483 0.91908 0.91152 0.92116 0.78777 0.92104 0.84290 0.84916 0.84469 0.84098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.90 9.17 37.16 0.34 -1.56 16 2 C 0.07 0.97 2.26 -26.73 -0.06 0.91 16 3 H 0.08 0.96 6.32 -51.93 -0.33 0.63 16 4 C 0.14 2.56 5.34 -4.05 -0.02 2.54 16 5 N -0.77 -17.11 5.50 -61.72 -0.34 -17.45 16 6 C 0.56 15.85 7.75 -12.98 -0.10 15.75 16 7 O -0.58 -18.84 15.02 5.21 0.08 -18.76 16 8 C -0.54 -15.49 9.54 -35.63 -0.34 -15.83 16 9 H 0.07 1.76 7.85 -52.48 -0.41 1.35 16 10 C 0.09 2.45 5.50 -17.37 -0.10 2.36 16 11 N -0.77 -23.12 11.83 55.55 0.66 -22.46 16 12 Si 0.91 20.21 29.56 -169.99 -5.02 15.19 16 13 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 14 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 15 H -0.26 -5.72 7.11 56.52 0.40 -5.32 16 16 O -0.30 -4.36 9.75 -19.50 -0.19 -4.55 16 17 C 0.15 1.89 6.60 -39.23 -0.26 1.63 16 18 C -0.20 -2.23 8.24 -39.44 -0.32 -2.55 16 19 C -0.07 -0.70 9.82 -39.57 -0.39 -1.09 16 20 C -0.08 -0.85 6.32 -39.49 -0.25 -1.10 16 21 Cl -0.08 -0.78 28.95 -51.86 -1.50 -2.28 16 22 C -0.07 -0.72 9.82 -39.57 -0.39 -1.11 16 23 C -0.14 -1.67 9.99 -39.44 -0.39 -2.06 16 24 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.06 0.59 6.90 -51.93 -0.36 0.23 16 27 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 28 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.38 7.69 8.45 -40.82 -0.34 7.35 16 30 H 0.27 7.30 8.29 -40.82 -0.34 6.97 16 31 H 0.14 1.34 5.42 -52.49 -0.28 1.05 16 32 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 33 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 34 H 0.14 1.54 8.06 -52.49 -0.42 1.12 16 LS Contribution 312.24 15.07 4.71 4.71 Total: -1.00 -34.06 312.24 -7.72 -41.77 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -3.82 Total: 5.96 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: -2.28 Total: -2.13 kcal Atomic # 7 Polarization: -40.23 SS G_CDS: 0.32 Total: -39.91 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: -0.11 Total: -23.31 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -1.50 Total: -2.28 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -34.06 -7.72 -41.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083393939.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.083 kcal (2) G-P(sol) polarization free energy of solvation -34.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds