Wall clock time and date at job start Tue Mar 31 2020 05:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37105 * 119.99936 * 2 1 4 4 H 1.08003 * 119.99586 * 204.39699 * 3 2 1 5 5 C 1.38946 * 120.00192 * 24.39037 * 3 2 1 6 6 N 1.31421 * 119.99942 * 12.64534 * 5 3 2 7 7 Si 1.86798 * 120.00196 * 192.63870 * 5 3 2 8 8 H 1.48496 * 109.46805 * 90.00349 * 7 5 3 9 9 H 1.48501 * 109.47098 * 210.00340 * 7 5 3 10 10 H 1.48499 * 109.47213 * 330.00403 * 7 5 3 11 11 C 1.34769 * 120.00022 * 179.97438 * 2 1 3 12 12 O 1.21291 * 120.00359 * 179.97438 * 11 2 1 13 13 C 1.50702 * 119.99959 * 359.97438 * 11 2 1 14 14 C 1.53003 * 109.47223 * 179.97438 * 13 11 2 15 15 H 1.08995 * 109.47054 * 55.00051 * 14 13 11 16 16 O 1.42904 * 109.46862 * 294.99989 * 14 13 11 17 17 C 1.50699 * 109.46979 * 175.00080 * 14 13 11 18 18 C 1.38239 * 119.98723 * 264.99452 * 17 14 13 19 19 C 1.38213 * 120.01381 * 179.97438 * 18 17 14 20 20 C 1.38348 * 119.98719 * 0.02562 * 19 18 17 21 21 Cl 1.73599 * 120.01456 * 180.02562 * 20 19 18 22 22 C 1.38358 * 119.97325 * 0.28185 * 20 19 18 23 23 C 1.38219 * 119.98498 * 359.39373 * 22 20 19 24 24 H 1.09008 * 109.47125 * 265.86741 * 1 2 3 25 25 H 1.09005 * 109.46868 * 25.86176 * 1 2 3 26 26 H 1.08992 * 109.47440 * 145.86318 * 1 2 3 27 27 H 0.96997 * 119.99819 * 179.97438 * 6 5 3 28 28 H 1.09004 * 109.47202 * 60.00174 * 13 11 2 29 29 H 1.08995 * 109.47598 * 300.00033 * 13 11 2 30 30 H 0.96696 * 113.99987 * 300.00153 * 16 14 13 31 31 H 1.08005 * 119.99157 * 0.02562 * 18 17 14 32 32 H 1.08000 * 120.00679 * 180.02562 * 19 18 17 33 33 H 1.08004 * 120.00783 * 179.71719 * 22 20 19 34 34 H 1.07994 * 119.99030 * 180.32249 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1874 0.0000 4 1 3.1582 1.2291 -0.3864 5 6 1.5488 2.3370 0.4969 6 7 0.4345 2.2492 1.1881 7 14 2.3238 4.0073 0.1826 8 1 1.7870 4.5720 -1.0816 9 1 2.0035 4.9213 1.3084 10 1 3.7969 3.8565 0.0712 11 6 2.1389 -1.1671 0.0005 12 8 3.3518 -1.1672 0.0001 13 6 1.3853 -2.4722 0.0017 14 6 2.3796 -3.6352 0.0014 15 1 3.0643 -3.5280 0.8426 16 8 3.1209 -3.6278 -1.2202 17 6 1.6302 -4.9367 0.1264 18 6 1.4570 -5.5177 1.3688 19 6 0.7693 -6.7110 1.4841 20 6 0.2548 -7.3245 0.3558 21 17 -0.6095 -8.8230 0.4999 22 6 0.4341 -6.7458 -0.8881 23 6 1.1161 -5.5489 -1.0014 24 1 -0.3634 -0.0741 1.0251 25 1 -0.3633 0.9248 -0.4483 26 1 -0.3634 -0.8505 -0.5766 27 1 0.0147 3.0517 1.5353 28 1 0.7583 -2.5306 -0.8881 29 1 0.7590 -2.5295 0.8919 30 1 2.5743 -3.7195 -2.0126 31 1 1.8583 -5.0385 2.2496 32 1 0.6337 -7.1646 2.4548 33 1 0.0366 -7.2265 -1.7698 34 1 1.2515 -5.0945 -1.9717 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091234099.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:49 Heat of formation + Delta-G solvation = -62.226663 kcal Electronic energy + Delta-G solvation = -19523.149035 eV Core-core repulsion = 16254.107788 eV Total energy + Delta-G solvation = -3269.041247 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.92316 -38.46640 -36.97475 -36.16623 -34.54402 -32.00389 -31.51974 -31.15051 -29.32917 -26.28029 -24.93405 -23.55502 -22.98467 -21.12059 -19.00113 -17.76780 -16.83691 -16.33337 -16.13654 -15.70015 -15.05028 -14.75021 -14.48449 -14.14057 -13.72311 -13.70994 -13.50787 -13.42694 -12.43766 -12.31217 -11.97137 -11.74432 -11.64066 -11.44421 -11.24563 -11.10678 -11.01449 -10.90680 -10.71890 -10.34432 -10.25228 -9.90116 -9.21885 -8.99455 -8.75949 -8.30498 -7.63283 -6.30909 -3.86925 0.94930 1.11598 1.93455 3.17354 3.25913 3.31649 3.43000 3.92414 4.13959 4.50739 4.57808 4.66638 4.71812 5.04826 5.12319 5.13610 5.23631 5.34199 5.46488 5.56874 5.74349 5.87177 6.02941 6.05249 6.05758 6.13198 6.36254 6.51242 6.61330 6.83601 7.18154 7.58485 7.89081 8.16579 8.51256 9.21911 9.44859 10.02167 10.74350 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.038714 B = 0.003313 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.080250 B = 8448.840126 C = 8784.641160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.451 5.451 3 C -0.305 4.305 4 H 0.097 0.903 5 C 0.029 3.971 6 N -0.885 5.885 7 Si 0.925 3.075 8 H -0.278 1.278 9 H -0.284 1.284 10 H -0.269 1.269 11 C 0.450 3.550 12 O -0.574 6.574 13 C -0.158 4.158 14 C 0.166 3.834 15 H 0.115 0.885 16 O -0.534 6.534 17 C -0.101 4.101 18 C -0.097 4.097 19 C -0.108 4.108 20 C -0.040 4.040 21 Cl -0.078 7.078 22 C -0.108 4.108 23 C -0.101 4.101 24 H 0.050 0.950 25 H 0.073 0.927 26 H 0.023 0.977 27 H 0.267 0.733 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.362 0.638 31 H 0.136 0.864 32 H 0.133 0.867 33 H 0.132 0.868 34 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.026 -16.759 -2.023 17.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.171 5.171 3 C -0.433 4.433 4 H 0.115 0.885 5 C -0.174 4.174 6 N -0.524 5.524 7 Si 0.752 3.248 8 H -0.204 1.204 9 H -0.210 1.210 10 H -0.194 1.194 11 C 0.237 3.763 12 O -0.457 6.457 13 C -0.199 4.199 14 C 0.106 3.894 15 H 0.133 0.867 16 O -0.338 6.338 17 C -0.102 4.102 18 C -0.116 4.116 19 C -0.126 4.126 20 C -0.067 4.067 21 Cl -0.049 7.049 22 C -0.126 4.126 23 C -0.119 4.119 24 H 0.069 0.931 25 H 0.092 0.908 26 H 0.042 0.958 27 H 0.077 0.923 28 H 0.098 0.902 29 H 0.106 0.894 30 H 0.209 0.791 31 H 0.154 0.846 32 H 0.151 0.849 33 H 0.150 0.850 34 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -4.135 -16.660 -1.502 17.231 hybrid contribution -0.687 0.668 -0.316 1.009 sum -4.822 -15.991 -1.818 16.801 Atomic orbital electron populations 1.21452 0.81471 0.99753 1.00438 1.43575 1.05306 1.04784 1.63404 1.19654 1.00585 0.84205 1.38831 0.88477 1.25336 0.96687 1.00100 0.95239 1.69993 1.19349 1.29522 1.33576 0.85936 0.79693 0.81368 0.77786 1.20429 1.20997 1.19354 1.19857 0.88089 0.84538 0.83781 1.90563 1.13641 1.86864 1.54658 1.22304 0.99016 0.94946 1.03637 1.20569 0.92061 0.87413 0.89325 0.86736 1.86784 1.36418 1.95989 1.14609 1.20964 0.97667 0.97857 0.93666 1.21034 0.98257 0.94646 0.97638 1.21043 0.98134 0.95745 0.97723 1.20922 1.00529 0.89832 0.95407 1.98362 1.75618 1.32590 1.98345 1.20997 0.99637 0.95903 0.96081 1.20885 0.97316 0.94899 0.98828 0.93133 0.90790 0.95838 0.92335 0.90188 0.89368 0.79122 0.84637 0.84900 0.84966 0.85090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.47 8.44 59.85 0.51 2.98 16 2 N -0.45 -11.45 3.01 -122.19 -0.37 -11.82 16 3 C -0.30 -8.53 9.24 -14.93 -0.14 -8.66 16 4 H 0.10 2.86 7.45 -52.48 -0.39 2.47 16 5 C 0.03 0.77 5.04 -17.47 -0.09 0.68 16 6 N -0.88 -23.62 10.83 55.50 0.60 -23.01 16 7 Si 0.93 20.84 29.57 -169.99 -5.03 15.81 16 8 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 9 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 10 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 11 C 0.45 10.69 7.51 -10.99 -0.08 10.60 16 12 O -0.57 -15.78 15.13 -8.86 -0.13 -15.92 16 13 C -0.16 -2.70 3.97 -27.88 -0.11 -2.81 16 14 C 0.17 2.58 2.76 -27.88 -0.08 2.50 16 15 H 0.11 1.97 7.86 -51.93 -0.41 1.56 16 16 O -0.53 -8.86 12.37 -49.64 -0.61 -9.47 16 17 C -0.10 -1.26 5.00 -104.62 -0.52 -1.78 16 18 C -0.10 -1.11 9.68 -39.59 -0.38 -1.49 16 19 C -0.11 -1.13 9.83 -39.55 -0.39 -1.52 16 20 C -0.04 -0.43 6.32 -39.50 -0.25 -0.68 16 21 Cl -0.08 -0.76 28.96 -51.86 -1.50 -2.26 16 22 C -0.11 -1.09 9.83 -39.54 -0.39 -1.48 16 23 C -0.10 -1.09 9.33 -39.59 -0.37 -1.46 16 24 H 0.05 1.14 7.83 -51.92 -0.41 0.73 16 25 H 0.07 1.73 6.80 -51.93 -0.35 1.38 16 26 H 0.02 0.42 6.61 -51.93 -0.34 0.07 16 27 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 28 H 0.08 1.20 7.41 -51.93 -0.38 0.81 16 29 H 0.09 1.41 8.11 -51.93 -0.42 0.98 16 30 H 0.36 4.47 7.39 45.56 0.34 4.80 16 31 H 0.14 1.38 8.06 -52.48 -0.42 0.96 16 32 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 33 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 34 H 0.13 1.15 6.61 -52.49 -0.35 0.80 16 LS Contribution 306.70 15.07 4.62 4.62 Total: -1.00 -32.31 306.70 -7.84 -40.15 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -3.12 Total: 5.02 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: -2.29 Total: -3.12 kcal Atomic # 7 Polarization: -35.06 SS G_CDS: 0.23 Total: -34.83 kcal Atomic # 8 Polarization: -24.64 SS G_CDS: -0.75 Total: -25.39 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.03 Total: 15.81 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -1.50 Total: -2.26 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.31 -7.84 -40.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091234099.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.080 kcal (2) G-P(sol) polarization free energy of solvation -32.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds