Wall clock time and date at job start Tue Mar 31 2020 06:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38501 * 120.38550 * 2 1 4 4 C 1.39259 * 118.37428 * 179.97438 * 3 2 1 5 5 N 1.40030 * 120.46721 * 179.97438 * 4 3 2 6 6 C 1.34772 * 120.00420 * 325.05430 * 5 4 3 7 7 O 1.21590 * 119.99764 * 4.64741 * 6 5 4 8 8 N 1.34778 * 120.00026 * 184.64537 * 6 5 4 9 9 C 1.46498 * 120.00371 * 359.97438 * 8 6 5 10 10 C 1.46508 * 119.99866 * 180.02562 * 8 6 5 11 11 C 1.50700 * 109.47019 * 89.99616 * 10 8 6 12 12 H 1.08001 * 120.00206 * 0.02562 * 11 10 8 13 13 C 1.37878 * 119.99483 * 179.97438 * 11 10 8 14 14 N 1.31508 * 120.00277 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99894 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47141 * 90.00069 * 15 13 11 17 17 H 1.48496 * 109.46987 * 210.00152 * 15 13 11 18 18 H 1.48503 * 109.46883 * 330.00423 * 15 13 11 19 19 C 1.38826 * 119.05625 * 0.02562 * 4 3 2 20 20 N 1.31824 * 120.67959 * 359.97438 * 19 4 3 21 21 C 1.31973 * 121.77873 * 0.02562 * 20 19 4 22 22 Cl 1.73598 * 119.55578 * 179.97438 * 21 20 19 23 23 H 1.09008 * 109.46867 * 90.00428 * 1 2 3 24 24 H 1.09001 * 109.47439 * 209.99828 * 1 2 3 25 25 H 1.08998 * 109.47159 * 330.00359 * 1 2 3 26 26 H 1.08004 * 120.81760 * 359.95965 * 3 2 1 27 27 H 0.97006 * 119.99839 * 145.06501 * 5 4 3 28 28 H 1.09000 * 109.46728 * 90.00111 * 9 8 6 29 29 H 1.08991 * 109.47462 * 210.00344 * 9 8 6 30 30 H 1.09001 * 109.47140 * 330.00794 * 9 8 6 31 31 H 1.08999 * 109.46733 * 210.00172 * 10 8 6 32 32 H 1.08999 * 109.46615 * 329.99795 * 10 8 6 33 33 H 0.97007 * 120.00153 * 179.97438 * 14 13 11 34 34 H 1.07994 * 119.65985 * 179.72175 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2076 1.1948 0.0000 4 6 3.5993 1.1459 0.0005 5 7 4.3512 2.3272 0.0000 6 6 3.9063 3.4090 -0.6694 7 8 2.8135 3.3873 -1.2020 8 7 4.6727 4.5148 -0.7484 9 6 5.9892 4.5412 -0.1061 10 6 4.1888 5.6910 -1.4756 11 6 3.4318 6.5891 -0.5314 12 1 3.3225 6.3117 0.5066 13 6 2.8798 7.7653 -0.9926 14 7 3.0134 8.1033 -2.2565 15 14 1.9420 8.8789 0.1779 16 1 2.8801 9.8511 0.7945 17 1 0.8911 9.6125 -0.5721 18 1 1.3095 8.0584 1.2418 19 6 4.2305 -0.0906 0.0005 20 7 3.5266 -1.2051 0.0005 21 6 2.2069 -1.1937 0.0000 22 17 1.3376 -2.6963 -0.0007 23 1 -0.3633 -0.0001 -1.0278 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 1.6873 2.1412 -0.0007 27 1 5.1925 2.3668 0.4814 28 1 6.7437 4.1894 -0.8097 29 1 6.2242 5.5608 0.1991 30 1 5.9791 3.8928 0.7700 31 1 5.0367 6.2344 -1.8928 32 1 3.5285 5.3730 -2.2824 33 1 2.6246 8.9307 -2.5810 34 1 5.3094 -0.1398 -0.0036 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000119529223.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:03 Heat of formation + Delta-G solvation = 6.980387 kcal Electronic energy + Delta-G solvation = -19583.381472 eV Core-core repulsion = 16349.634020 eV Total energy + Delta-G solvation = -3233.747453 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.81902 -39.31248 -36.69927 -35.30355 -34.69348 -33.71614 -32.66596 -30.02514 -27.78979 -27.41334 -25.95817 -23.99746 -22.99704 -21.79047 -19.74668 -18.05092 -17.26929 -16.84773 -16.63380 -16.41546 -15.14757 -14.86237 -14.62521 -14.10862 -13.93471 -13.29149 -13.20696 -13.04915 -12.83293 -12.77872 -12.31074 -12.12745 -12.03550 -11.75922 -11.29002 -11.15824 -10.98793 -10.66220 -10.54996 -10.23727 -9.89340 -9.73899 -9.51226 -9.15807 -8.50772 -8.23696 -7.75827 -6.11512 -4.16916 0.87434 1.19555 1.81625 2.95268 3.25291 3.32536 3.36269 3.44282 3.80478 4.23132 4.39436 4.45129 4.74531 4.85113 4.91202 5.22856 5.29268 5.37881 5.49911 5.57501 5.74234 5.86344 5.99736 6.03589 6.09234 6.29145 6.59874 6.80353 7.21681 7.35725 7.50422 7.65246 7.84961 8.13572 8.38589 8.82511 9.03910 9.48629 10.96391 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.025973 B = 0.003893 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.770538 B = 7191.062382 C = 7920.238516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.095 4.095 3 C -0.072 4.072 4 C 0.142 3.858 5 N -0.690 5.690 6 C 0.697 3.303 7 O -0.567 6.567 8 N -0.608 5.608 9 C 0.082 3.918 10 C 0.259 3.741 11 C -0.530 4.530 12 H 0.057 0.943 13 C 0.062 3.938 14 N -0.893 5.893 15 Si 0.899 3.101 16 H -0.280 1.280 17 H -0.285 1.285 18 H -0.274 1.274 19 C 0.075 3.925 20 N -0.457 5.457 21 C 0.140 3.860 22 Cl -0.041 7.041 23 H 0.080 0.920 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.166 0.834 27 H 0.406 0.594 28 H 0.048 0.952 29 H 0.081 0.919 30 H 0.050 0.950 31 H 0.036 0.964 32 H 0.046 0.954 33 H 0.264 0.736 34 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.254 -15.470 6.148 16.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.098 4.098 3 C -0.100 4.100 4 C 0.043 3.957 5 N -0.340 5.340 6 C 0.399 3.601 7 O -0.443 6.443 8 N -0.343 5.343 9 C -0.062 4.062 10 C 0.140 3.860 11 C -0.569 4.569 12 H 0.076 0.924 13 C -0.140 4.140 14 N -0.532 5.532 15 Si 0.726 3.274 16 H -0.206 1.206 17 H -0.210 1.210 18 H -0.199 1.199 19 C -0.086 4.086 20 N -0.166 5.166 21 C -0.025 4.025 22 Cl -0.012 7.012 23 H 0.099 0.901 24 H 0.093 0.907 25 H 0.095 0.905 26 H 0.183 0.817 27 H 0.244 0.756 28 H 0.066 0.934 29 H 0.099 0.901 30 H 0.069 0.931 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 1.823 -16.119 5.565 17.150 hybrid contribution -0.352 1.416 0.841 1.684 sum 1.471 -14.703 6.406 16.106 Atomic orbital electron populations 1.20837 0.89286 1.03634 1.03433 1.20501 0.98144 0.91055 1.00143 1.21841 0.92674 0.99229 0.96254 1.18655 0.91706 0.86718 0.98668 1.42937 1.25836 1.10451 1.54809 1.15934 0.84602 0.79891 0.79709 1.90893 1.20126 1.81882 1.51388 1.47533 1.16917 1.14104 1.55745 1.21632 0.85064 1.03451 0.96077 1.19301 0.95237 0.79506 0.91968 1.21428 1.34698 1.04711 0.96072 0.92441 1.24926 0.96080 0.97742 0.95251 1.69924 1.45233 1.24199 1.13860 0.86487 0.79664 0.80434 0.80775 1.20616 1.21022 1.19914 1.22340 0.99900 0.85165 1.01157 1.66869 1.06614 1.30939 1.12192 1.21326 0.89650 0.86765 1.04743 1.98363 1.73603 1.32509 1.96752 0.90139 0.90673 0.90537 0.81708 0.75611 0.93375 0.90058 0.93098 0.94600 0.93575 0.92605 0.81889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.27 9.63 36.01 0.35 -0.92 16 2 C -0.09 -1.30 5.90 -104.47 -0.62 -1.92 16 3 C -0.07 -1.12 8.49 -39.11 -0.33 -1.45 16 4 C 0.14 2.07 6.32 -83.51 -0.53 1.54 16 5 N -0.69 -10.11 5.23 -14.12 -0.07 -10.18 16 6 C 0.70 13.81 8.14 -86.92 -0.71 13.10 16 7 O -0.57 -13.51 13.40 5.29 0.07 -13.44 16 8 N -0.61 -12.11 2.86 -188.74 -0.54 -12.65 16 9 C 0.08 1.15 10.24 59.85 0.61 1.77 16 10 C 0.26 6.47 5.16 -5.19 -0.03 6.45 16 11 C -0.53 -14.46 9.39 -34.44 -0.32 -14.79 16 12 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 13 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 14 N -0.89 -25.83 13.29 55.43 0.74 -25.09 16 15 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 16 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 19 C 0.08 0.96 11.12 -17.34 -0.19 0.77 16 20 N -0.46 -6.46 10.33 -10.21 -0.11 -6.56 16 21 C 0.14 1.94 7.27 -17.44 -0.13 1.81 16 22 Cl -0.04 -0.48 27.45 -51.86 -1.42 -1.91 16 23 H 0.08 0.85 8.14 -51.92 -0.42 0.43 16 24 H 0.07 0.72 6.91 -51.93 -0.36 0.37 16 25 H 0.08 0.80 8.09 -51.93 -0.42 0.38 16 26 H 0.17 2.92 6.32 -52.48 -0.33 2.59 16 27 H 0.41 4.46 6.52 -40.82 -0.27 4.19 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.08 1.19 8.07 -51.93 -0.42 0.77 16 30 H 0.05 0.55 6.30 -51.93 -0.33 0.22 16 31 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 32 H 0.05 1.31 7.42 -51.93 -0.39 0.92 16 33 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 34 H 0.16 1.54 8.06 -52.49 -0.42 1.11 16 LS Contribution 308.69 15.07 4.65 4.65 Total: -1.00 -32.24 308.69 -7.44 -39.68 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -3.74 Total: 1.27 kcal Atomic # 6 Polarization: 9.99 SS G_CDS: -1.99 Total: 8.00 kcal Atomic # 7 Polarization: -54.50 SS G_CDS: 0.02 Total: -54.48 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: 0.07 Total: -13.44 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -1.42 Total: -1.91 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.24 -7.44 -39.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119529223.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.659 kcal (2) G-P(sol) polarization free energy of solvation -32.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds