Wall clock time and date at job start Tue Mar 31 2020 06:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31986 * 119.59133 * 2 1 4 4 C 1.31938 * 121.90575 * 180.27582 * 3 2 1 5 5 C 1.37993 * 120.86123 * 359.97438 * 4 3 2 6 6 C 1.39338 * 119.08270 * 0.02562 * 5 4 3 7 7 N 1.39601 * 120.85995 * 180.02562 * 6 5 4 8 8 C 1.34771 * 119.99782 * 24.45397 * 7 6 5 9 9 O 1.21576 * 120.00341 * 5.72757 * 8 7 6 10 10 N 1.34784 * 119.99833 * 185.72916 * 8 7 6 11 11 C 1.46498 * 120.00038 * 179.97438 * 10 8 7 12 12 H 1.08993 * 109.47284 * 325.00490 * 11 10 8 13 13 C 1.53003 * 109.47008 * 85.00462 * 11 10 8 14 14 C 1.50695 * 109.46811 * 204.99908 * 11 10 8 15 15 H 1.08002 * 120.00575 * 0.02562 * 14 11 10 16 16 C 1.37883 * 119.99786 * 180.02562 * 14 11 10 17 17 N 1.31510 * 120.00169 * 180.02562 * 16 14 11 18 18 Si 1.86803 * 120.00010 * 0.02562 * 16 14 11 19 19 H 1.48492 * 109.47351 * 89.99712 * 18 16 14 20 20 H 1.48498 * 109.47025 * 209.99962 * 18 16 14 21 21 H 1.48504 * 109.46808 * 329.99902 * 18 16 14 22 22 C 1.38026 * 119.58941 * 180.26704 * 2 1 3 23 23 Cl 1.73603 * 120.47267 * 359.70579 * 22 2 1 24 24 H 1.08999 * 109.47380 * 269.73023 * 1 2 3 25 25 H 1.08996 * 109.46721 * 29.73326 * 1 2 3 26 26 H 1.08997 * 109.47070 * 149.72925 * 1 2 3 27 27 H 1.08002 * 119.57827 * 179.97438 * 4 3 2 28 28 H 1.07998 * 120.46296 * 180.02562 * 5 4 3 29 29 H 0.96994 * 119.99472 * 204.44884 * 7 6 5 30 30 H 0.96999 * 119.99709 * 359.97438 * 10 8 7 31 31 H 1.09004 * 109.47152 * 59.99454 * 13 11 10 32 32 H 1.08992 * 109.47477 * 180.02562 * 13 11 10 33 33 H 1.09003 * 109.47056 * 300.00205 * 13 11 10 34 34 H 0.96999 * 119.99931 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1588 1.1477 0.0000 4 6 3.4771 1.2010 -0.0054 5 6 4.2322 0.0460 -0.0108 6 6 3.5836 -1.1872 -0.0110 7 7 4.3109 -2.3788 -0.0158 8 6 5.5704 -2.4013 0.4630 9 8 6.0368 -1.4120 0.9938 10 7 6.3131 -3.5208 0.3535 11 6 7.6825 -3.5452 0.8734 12 1 8.1423 -2.5672 0.7319 13 6 7.6556 -3.8850 2.3650 14 6 8.4816 -4.5878 0.1350 15 1 8.0162 -5.1734 -0.6440 16 6 9.8071 -4.7941 0.4540 17 7 10.5047 -5.7036 -0.1907 18 14 10.6119 -3.7818 1.8019 19 1 10.4479 -4.4737 3.1055 20 1 12.0581 -3.6223 1.5046 21 1 9.9695 -2.4445 1.8670 22 6 2.1885 -1.2002 -0.0056 23 17 1.3222 -2.7046 -0.0049 24 1 -0.3634 -0.0048 1.0276 25 1 -0.3632 0.8924 -0.5097 26 1 -0.3633 -0.8875 -0.5180 27 1 3.9718 2.1610 -0.0056 28 1 5.3109 0.0971 -0.0147 29 1 3.9096 -3.1904 -0.3637 30 1 5.9408 -4.3102 -0.0697 31 1 7.1956 -4.8631 2.5066 32 1 8.6743 -3.9028 2.7521 33 1 7.0774 -3.1310 2.8991 34 1 11.4372 -5.8485 0.0335 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121452776.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:21 Heat of formation + Delta-G solvation = 4.180325 kcal Electronic energy + Delta-G solvation = -19616.520528 eV Core-core repulsion = 16382.651656 eV Total energy + Delta-G solvation = -3233.868873 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.93795 -39.44071 -36.83509 -35.90278 -34.74538 -32.84933 -32.46429 -31.04834 -29.35752 -27.81051 -25.28599 -23.59957 -23.15670 -21.11245 -20.19062 -18.80225 -17.63855 -16.76609 -16.45425 -16.16301 -15.55032 -15.05155 -14.70181 -14.59102 -14.16083 -13.68049 -13.39888 -13.09816 -12.77732 -12.58528 -12.30808 -12.27439 -12.15177 -11.99393 -11.47488 -11.23929 -10.92817 -10.88033 -10.27293 -10.17122 -9.71006 -9.44361 -9.32714 -8.92316 -8.86787 -8.64107 -8.24235 -6.28303 -4.32015 0.84439 1.09704 1.86230 2.70236 3.18415 3.30780 3.31285 3.34309 3.70325 4.15882 4.24710 4.43734 4.48355 4.81061 5.06272 5.06771 5.28000 5.40204 5.48848 5.61326 5.79395 5.96816 6.20128 6.25380 6.27549 6.45824 6.63992 6.66131 6.87098 7.12904 7.25360 7.40093 7.82781 8.11730 8.41137 8.67621 8.81394 9.31241 10.83659 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.032319 B = 0.004013 C = 0.003735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.167122 B = 6975.705473 C = 7495.029194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.160 3.840 3 N -0.496 5.496 4 C 0.126 3.874 5 C -0.183 4.183 6 C 0.243 3.757 7 N -0.682 5.682 8 C 0.696 3.304 9 O -0.576 6.576 10 N -0.705 5.705 11 C 0.253 3.747 12 H 0.052 0.948 13 C -0.164 4.164 14 C -0.538 4.538 15 H 0.081 0.919 16 C 0.080 3.920 17 N -0.890 5.890 18 Si 0.886 3.114 19 H -0.276 1.276 20 H -0.293 1.293 21 H -0.261 1.261 22 C -0.139 4.139 23 Cl -0.056 7.056 24 H 0.082 0.918 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.165 0.835 28 H 0.169 0.831 29 H 0.410 0.590 30 H 0.395 0.605 31 H 0.053 0.947 32 H 0.049 0.951 33 H 0.037 0.963 34 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.921 8.134 -0.217 19.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.021 3.979 3 N -0.208 5.208 4 C -0.030 4.030 5 C -0.206 4.206 6 C 0.135 3.865 7 N -0.328 5.328 8 C 0.396 3.604 9 O -0.453 6.453 10 N -0.356 5.356 11 C 0.150 3.850 12 H 0.069 0.931 13 C -0.222 4.222 14 C -0.576 4.576 15 H 0.099 0.901 16 C -0.124 4.124 17 N -0.526 5.526 18 Si 0.715 3.285 19 H -0.202 1.202 20 H -0.220 1.220 21 H -0.186 1.186 22 C -0.171 4.171 23 Cl -0.028 7.028 24 H 0.100 0.900 25 H 0.100 0.900 26 H 0.097 0.903 27 H 0.182 0.818 28 H 0.186 0.814 29 H 0.247 0.753 30 H 0.229 0.771 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.056 0.944 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -17.687 9.458 0.251 20.058 hybrid contribution 0.709 -1.467 0.381 1.673 sum -16.977 7.991 0.632 18.774 Atomic orbital electron populations 1.20773 0.88133 1.03895 1.03550 1.20946 0.97248 0.85990 0.93713 1.67671 1.10315 1.27125 1.15678 1.22748 0.88782 0.98560 0.92892 1.22534 1.04141 0.90172 1.03784 1.17598 0.88267 0.87212 0.93452 1.42826 1.14622 1.10503 1.64833 1.16075 0.79764 0.85141 0.79382 1.90855 1.71306 1.34107 1.49058 1.45543 1.15976 1.12383 1.61652 1.19097 0.76759 0.99026 0.90157 0.93054 1.22490 1.00279 1.00542 0.98871 1.20992 0.95662 1.20098 1.20886 0.90117 1.24811 0.96748 0.94683 0.96165 1.69856 1.09341 1.32421 1.41026 0.86874 0.78081 0.81690 0.81847 1.20234 1.22042 1.18593 1.21557 0.90841 0.88974 1.15774 1.98344 1.75991 1.31222 1.97202 0.89977 0.90022 0.90255 0.81794 0.81390 0.75331 0.77129 0.92739 0.93228 0.94437 0.92149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 9.77 36.01 0.35 -0.58 16 2 C 0.16 1.93 6.78 -82.60 -0.56 1.37 16 3 N -0.50 -6.41 10.27 -9.53 -0.10 -6.51 16 4 C 0.13 1.57 11.17 -17.60 -0.20 1.37 16 5 C -0.18 -2.64 8.79 -39.26 -0.35 -2.99 16 6 C 0.24 3.47 6.47 -83.44 -0.54 2.93 16 7 N -0.68 -9.86 5.22 -14.04 -0.07 -9.93 16 8 C 0.70 12.67 8.35 -86.92 -0.73 11.94 16 9 O -0.58 -12.15 13.22 5.30 0.07 -12.08 16 10 N -0.70 -13.29 5.07 -59.82 -0.30 -13.60 16 11 C 0.25 5.78 2.15 -69.08 -0.15 5.63 16 12 H 0.05 1.29 6.64 -51.93 -0.34 0.94 16 13 C -0.16 -3.54 8.96 37.16 0.33 -3.21 16 14 C -0.54 -14.06 9.31 -34.44 -0.32 -14.38 16 15 H 0.08 2.22 7.98 -52.49 -0.42 1.80 16 16 C 0.08 2.18 5.45 -17.82 -0.10 2.09 16 17 N -0.89 -25.75 13.96 55.43 0.77 -24.97 16 18 Si 0.89 21.14 24.37 -169.99 -4.14 16.99 16 19 H -0.28 -6.38 6.87 56.52 0.39 -6.00 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.26 -6.16 6.53 56.52 0.37 -5.79 16 22 C -0.14 -1.74 6.35 -39.19 -0.25 -1.99 16 23 Cl -0.06 -0.59 26.28 -51.86 -1.36 -1.96 16 24 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.08 0.61 6.90 -51.93 -0.36 0.26 16 27 H 0.16 1.56 8.06 -52.49 -0.42 1.13 16 28 H 0.17 2.70 5.89 -52.49 -0.31 2.39 16 29 H 0.41 4.90 7.90 -40.82 -0.32 4.58 16 30 H 0.40 6.47 8.56 -40.82 -0.35 6.12 16 31 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.05 1.11 3.27 -51.93 -0.17 0.94 16 33 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 298.52 15.07 4.50 4.50 Total: -1.00 -30.43 298.52 -6.70 -37.13 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -3.57 Total: 8.22 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: -2.50 Total: 2.20 kcal Atomic # 7 Polarization: -55.31 SS G_CDS: 0.30 Total: -55.01 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.07 Total: -12.08 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.14 Total: 16.99 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.36 Total: -1.96 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.43 -6.70 -37.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121452776.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.311 kcal (2) G-P(sol) polarization free energy of solvation -30.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds