Wall clock time and date at job start Tue Mar 31 2020 06:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31988 * 119.58902 * 2 1 4 4 C 1.31944 * 121.90356 * 180.27997 * 3 2 1 5 5 C 1.37988 * 120.86141 * 359.97438 * 4 3 2 6 6 C 1.39334 * 119.08684 * 0.02562 * 5 4 3 7 7 N 1.39589 * 120.86656 * 179.97438 * 6 5 4 8 8 C 1.34775 * 120.00372 * 325.99026 * 7 6 5 9 9 O 1.21589 * 119.99456 * 4.17086 * 8 7 6 10 10 N 1.34772 * 120.00449 * 184.17437 * 8 7 6 11 11 C 1.46498 * 120.00278 * 179.97438 * 10 8 7 12 12 H 1.08999 * 109.46809 * 34.99335 * 11 10 8 13 13 C 1.53006 * 109.47158 * 275.00412 * 11 10 8 14 14 C 1.50700 * 109.47357 * 155.00120 * 11 10 8 15 15 H 1.07991 * 119.99805 * 359.97438 * 14 11 10 16 16 C 1.37875 * 119.99896 * 180.02562 * 14 11 10 17 17 N 1.31522 * 120.00131 * 359.97438 * 16 14 11 18 18 Si 1.86798 * 120.00030 * 179.97438 * 16 14 11 19 19 H 1.48506 * 109.46996 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47063 * 119.99659 * 18 16 14 21 21 H 1.48497 * 109.47190 * 239.99725 * 18 16 14 22 22 C 1.38025 * 119.59198 * 180.26856 * 2 1 3 23 23 Cl 1.73600 * 120.47115 * 359.70207 * 22 2 1 24 24 H 1.09000 * 109.46840 * 269.72591 * 1 2 3 25 25 H 1.08993 * 109.47027 * 29.72594 * 1 2 3 26 26 H 1.08996 * 109.46941 * 149.72993 * 1 2 3 27 27 H 1.08001 * 119.57282 * 179.97438 * 4 3 2 28 28 H 1.08003 * 120.45862 * 180.02562 * 5 4 3 29 29 H 0.97006 * 119.99846 * 145.98238 * 7 6 5 30 30 H 0.96999 * 119.99812 * 359.97438 * 10 8 7 31 31 H 1.08992 * 109.47491 * 59.99319 * 13 11 10 32 32 H 1.08997 * 109.47151 * 180.02562 * 13 11 10 33 33 H 1.09005 * 109.46816 * 299.99268 * 13 11 10 34 34 H 0.96998 * 119.99872 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1587 1.1478 0.0000 4 6 3.4771 1.2010 -0.0055 5 6 4.2322 0.0461 -0.0109 6 6 3.5837 -1.1871 -0.0112 7 7 4.3109 -2.3786 -0.0171 8 6 5.4850 -2.4483 -0.6751 9 8 5.9480 -1.4537 -1.1994 10 7 6.1459 -3.6203 -0.7521 11 6 7.4219 -3.6961 -1.4678 12 1 7.9721 -2.7655 -1.3291 13 6 7.1581 -3.9150 -2.9590 14 6 8.2336 -4.8451 -0.9273 15 1 7.8387 -5.4573 -0.1302 16 6 9.4809 -5.1140 -1.4499 17 7 9.9620 -4.3680 -2.4204 18 14 10.4873 -6.5377 -0.7795 19 1 9.7273 -7.2154 0.3015 20 1 10.7649 -7.5050 -1.8715 21 1 11.7699 -6.0241 -0.2352 22 6 2.1886 -1.2002 -0.0056 23 17 1.3223 -2.7046 -0.0049 24 1 -0.3633 -0.0049 1.0277 25 1 -0.3633 0.8924 -0.5095 26 1 -0.3633 -0.8875 -0.5180 27 1 3.9717 2.1611 -0.0057 28 1 5.3110 0.0973 -0.0150 29 1 3.9711 -3.1565 0.4524 30 1 5.7768 -4.4137 -0.3336 31 1 6.5710 -3.0840 -3.3499 32 1 8.1075 -3.9718 -3.4914 33 1 6.6079 -4.8457 -3.0978 34 1 10.8393 -4.5575 -2.7883 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121452934.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:24 Heat of formation + Delta-G solvation = -5.179063 kcal Electronic energy + Delta-G solvation = -19550.972212 eV Core-core repulsion = 16316.697486 eV Total energy + Delta-G solvation = -3234.274726 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.80720 -39.27569 -36.76702 -35.67041 -34.55386 -32.81678 -32.42844 -30.72908 -28.58658 -27.75215 -25.33076 -23.50386 -22.99880 -21.02825 -20.02140 -18.59059 -17.58171 -16.70657 -16.29206 -15.96765 -15.20144 -15.01737 -14.60432 -14.44792 -13.99898 -13.67021 -13.34420 -12.76873 -12.53866 -12.48781 -12.21355 -12.09157 -11.88140 -11.23735 -11.14976 -11.08692 -10.88694 -10.62945 -10.36634 -10.30704 -9.96768 -9.38976 -9.12662 -8.86471 -8.67970 -8.55958 -8.01532 -6.19585 -4.29201 0.89258 1.14153 1.92481 2.86648 3.19569 3.27830 3.30271 3.47066 3.77523 4.20342 4.25676 4.56729 4.67485 4.86799 5.13110 5.16167 5.33158 5.43237 5.53815 5.66132 5.87765 6.01772 6.35320 6.67767 6.72195 6.88954 6.95485 7.09240 7.31379 7.53931 7.70572 7.86382 7.86976 8.06566 8.58299 8.71908 9.03664 9.38595 10.86489 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.032597 B = 0.003788 C = 0.003558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.766559 B = 7390.385524 C = 7868.230857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.156 3.844 3 N -0.493 5.493 4 C 0.123 3.877 5 C -0.172 4.172 6 C 0.240 3.760 7 N -0.687 5.687 8 C 0.694 3.306 9 O -0.576 6.576 10 N -0.713 5.713 11 C 0.279 3.721 12 H 0.051 0.949 13 C -0.149 4.149 14 C -0.535 4.535 15 H 0.062 0.938 16 C 0.067 3.933 17 N -0.882 5.882 18 Si 0.903 3.097 19 H -0.273 1.273 20 H -0.282 1.282 21 H -0.282 1.282 22 C -0.133 4.133 23 Cl -0.056 7.056 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.165 0.835 28 H 0.164 0.836 29 H 0.408 0.592 30 H 0.388 0.612 31 H 0.015 0.985 32 H 0.092 0.908 33 H 0.027 0.973 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.137 4.960 5.989 17.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.017 3.983 3 N -0.205 5.205 4 C -0.033 4.033 5 C -0.195 4.195 6 C 0.133 3.867 7 N -0.335 5.335 8 C 0.394 3.606 9 O -0.454 6.454 10 N -0.363 5.363 11 C 0.178 3.822 12 H 0.069 0.931 13 C -0.207 4.207 14 C -0.574 4.574 15 H 0.081 0.919 16 C -0.137 4.137 17 N -0.519 5.519 18 Si 0.731 3.269 19 H -0.197 1.197 20 H -0.208 1.208 21 H -0.208 1.208 22 C -0.165 4.165 23 Cl -0.028 7.028 24 H 0.100 0.900 25 H 0.100 0.900 26 H 0.097 0.903 27 H 0.182 0.818 28 H 0.181 0.819 29 H 0.244 0.756 30 H 0.221 0.779 31 H 0.034 0.966 32 H 0.110 0.890 33 H 0.046 0.954 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -15.933 6.410 5.328 17.981 hybrid contribution 0.774 -2.555 0.679 2.754 sum -15.159 3.855 6.007 16.755 Atomic orbital electron populations 1.20767 0.88169 1.03945 1.03431 1.20953 0.97241 0.86037 0.94094 1.67668 1.10312 1.27149 1.15352 1.22746 0.88803 0.98582 0.93199 1.22448 1.03776 0.90367 1.02932 1.17566 0.88102 0.87323 0.93755 1.42844 1.22598 1.12605 1.55475 1.16126 0.79524 0.85544 0.79378 1.90883 1.67539 1.35008 1.51934 1.45917 1.25143 1.07849 1.57403 1.18759 0.77012 0.98426 0.88003 0.93087 1.22111 1.02175 0.97173 0.99275 1.21220 1.01693 1.14380 1.20095 0.91948 1.24880 0.97325 0.96691 0.94754 1.69911 1.18210 1.38489 1.25310 0.86363 0.79979 0.81745 0.78825 1.19735 1.20818 1.20817 1.21695 0.91087 0.88909 1.14838 1.98343 1.76007 1.31264 1.97138 0.90044 0.90035 0.90278 0.81795 0.81890 0.75588 0.77940 0.96562 0.88956 0.95420 0.92513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 9.77 36.01 0.35 -0.62 16 2 C 0.16 1.95 6.78 -82.60 -0.56 1.39 16 3 N -0.49 -6.59 10.27 -9.53 -0.10 -6.69 16 4 C 0.12 1.59 11.17 -17.60 -0.20 1.39 16 5 C -0.17 -2.58 8.78 -39.27 -0.34 -2.92 16 6 C 0.24 3.59 6.35 -83.44 -0.53 3.06 16 7 N -0.69 -10.47 5.10 -14.04 -0.07 -10.54 16 8 C 0.69 13.51 8.39 -86.92 -0.73 12.78 16 9 O -0.58 -13.16 13.45 5.29 0.07 -13.09 16 10 N -0.71 -14.28 5.07 -59.81 -0.30 -14.58 16 11 C 0.28 6.89 2.56 -69.08 -0.18 6.71 16 12 H 0.05 1.44 7.58 -51.93 -0.39 1.05 16 13 C -0.15 -3.63 9.26 37.16 0.34 -3.29 16 14 C -0.54 -13.76 8.73 -34.44 -0.30 -14.06 16 15 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 16 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 17 N -0.88 -24.27 11.32 55.43 0.63 -23.64 16 18 Si 0.90 20.17 29.54 -169.99 -5.02 15.15 16 19 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 20 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 22 C -0.13 -1.75 6.35 -39.18 -0.25 -2.00 16 23 Cl -0.06 -0.63 26.44 -51.86 -1.37 -2.00 16 24 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.08 0.67 6.90 -51.93 -0.36 0.31 16 27 H 0.16 1.62 8.06 -52.49 -0.42 1.20 16 28 H 0.16 2.69 6.27 -52.48 -0.33 2.36 16 29 H 0.41 5.10 8.18 -40.82 -0.33 4.77 16 30 H 0.39 6.65 8.56 -40.82 -0.35 6.30 16 31 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 33 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 306.18 15.07 4.61 4.61 Total: -1.00 -29.79 306.18 -7.77 -37.56 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -3.73 Total: 9.10 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: -2.49 Total: 4.12 kcal Atomic # 7 Polarization: -55.61 SS G_CDS: 0.15 Total: -55.46 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: 0.07 Total: -13.09 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -1.37 Total: -2.00 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.79 -7.77 -37.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121452934.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.380 kcal (2) G-P(sol) polarization free energy of solvation -29.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds