Wall clock time and date at job start Tue Mar 31 2020 05:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46688 * 2 1 4 4 C 1.50697 * 109.47009 * 120.00132 * 2 1 3 5 5 H 1.07994 * 120.00285 * 120.00412 * 4 2 1 6 6 C 1.37878 * 119.99936 * 299.99875 * 4 2 1 7 7 N 1.31519 * 120.00176 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00143 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47153 * 90.00028 * 8 6 4 10 10 H 1.48498 * 109.47560 * 210.00307 * 8 6 4 11 11 H 1.48501 * 109.47047 * 330.00318 * 8 6 4 12 12 N 1.46502 * 109.47202 * 240.00078 * 2 1 3 13 13 C 1.34776 * 120.00021 * 85.00004 * 12 2 1 14 14 O 1.21288 * 119.99927 * 0.02562 * 13 12 2 15 15 C 1.50697 * 120.00128 * 180.02562 * 13 12 2 16 16 C 1.50704 * 109.47214 * 179.97438 * 15 13 12 17 17 C 1.38269 * 119.94843 * 100.00142 * 16 15 13 18 18 C 1.38122 * 120.06430 * 180.25715 * 17 16 15 19 19 C 1.38769 * 119.97151 * 359.48610 * 18 17 16 20 20 O 1.35901 * 120.04782 * 180.25999 * 19 18 17 21 21 C 1.38679 * 119.90006 * 0.48749 * 19 18 17 22 22 C 1.38283 * 119.93501 * 359.76987 * 21 19 18 23 23 Cl 1.73596 * 119.98843 * 179.97438 * 22 21 19 24 24 H 1.09001 * 109.47244 * 299.99992 * 1 2 3 25 25 H 1.09000 * 109.46921 * 60.00211 * 1 2 3 26 26 H 1.09001 * 109.47145 * 179.97438 * 1 2 3 27 27 H 0.97000 * 120.00364 * 179.97438 * 7 6 4 28 28 H 0.96997 * 119.99600 * 265.00018 * 12 2 1 29 29 H 1.08996 * 109.47113 * 59.99690 * 15 13 12 30 30 H 1.09000 * 109.46967 * 300.00209 * 15 13 12 31 31 H 1.08002 * 119.96480 * 359.97161 * 17 16 15 32 32 H 1.08002 * 120.01165 * 179.74073 * 18 17 16 33 33 H 0.96703 * 113.99674 * 270.23111 * 20 19 18 34 34 H 1.07999 * 120.03510 * 179.78549 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5884 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9427 0.8297 2.6034 8 14 2.3224 -1.1195 4.0079 9 1 3.6304 -0.5440 4.4119 10 1 1.3444 -0.9491 5.1123 11 1 2.4880 -2.5653 3.7122 12 7 2.0184 -0.6906 -1.1962 13 6 2.1471 -0.0182 -2.3571 14 8 1.8591 1.1587 -2.4115 15 6 2.6489 -0.7287 -3.5877 16 6 2.6991 0.2395 -4.7415 17 6 3.9014 0.8167 -5.1064 18 6 3.9493 1.7085 -6.1601 19 6 2.7915 2.0174 -6.8599 20 8 2.8378 2.8906 -7.9003 21 6 1.5864 1.4374 -6.4931 22 6 1.5422 0.5492 -5.4342 23 17 0.0343 -0.1772 -4.9735 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7081 1.1609 3.4844 28 1 2.2491 -1.6317 -1.1526 29 1 1.9760 -1.5505 -3.8326 30 1 3.6480 -1.1213 -3.3986 31 1 4.8032 0.5734 -4.5641 32 1 4.8881 2.1620 -6.4418 33 1 2.6979 3.8131 -7.6460 34 1 0.6835 1.6790 -7.0341 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127940058.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:54 Heat of formation + Delta-G solvation = -71.257134 kcal Electronic energy + Delta-G solvation = -19508.402886 eV Core-core repulsion = 16238.970048 eV Total energy + Delta-G solvation = -3269.432837 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.08174 -38.74215 -37.16283 -36.12151 -34.74399 -32.45608 -31.93862 -30.88555 -29.03696 -26.64062 -25.23399 -22.99793 -22.29810 -20.83859 -19.37284 -18.64601 -17.16210 -16.37511 -16.17965 -15.67508 -15.49166 -15.04637 -14.40585 -14.30165 -13.96683 -13.61951 -13.34399 -12.67529 -12.64042 -12.37282 -11.97203 -11.74964 -11.49139 -11.30137 -11.06193 -10.95827 -10.81055 -10.73530 -10.68957 -10.29509 -10.22480 -9.14508 -9.04091 -8.88952 -8.55089 -8.47483 -7.88113 -6.11815 -4.21160 1.01362 1.12389 2.16144 3.24261 3.30723 3.32342 3.35442 3.42898 4.06746 4.18356 4.41537 4.67011 4.74021 4.91102 5.19612 5.21115 5.37219 5.53579 5.59480 5.68224 5.75434 6.01464 6.19266 6.32932 6.51647 6.85040 7.00134 7.17774 7.43784 7.48581 7.58007 7.70665 7.93142 8.16469 8.68702 8.79223 9.15581 9.46630 10.94074 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.031014 B = 0.003876 C = 0.003704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.614615 B = 7221.972424 C = 7557.194682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.266 3.734 3 H 0.048 0.952 4 C -0.534 4.534 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.901 3.099 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.710 5.710 13 C 0.506 3.494 14 O -0.545 6.545 15 C -0.113 4.113 16 C -0.053 4.053 17 C -0.082 4.082 18 C -0.140 4.140 19 C 0.109 3.891 20 O -0.498 6.498 21 C -0.138 4.138 22 C -0.001 4.001 23 Cl -0.058 7.058 24 H 0.089 0.911 25 H 0.015 0.985 26 H 0.025 0.975 27 H 0.264 0.736 28 H 0.388 0.612 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.136 0.864 32 H 0.133 0.867 33 H 0.392 0.608 34 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.782 -1.235 -16.967 17.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.164 3.836 3 H 0.065 0.935 4 C -0.572 4.572 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.358 5.358 13 C 0.291 3.709 14 O -0.424 6.424 15 C -0.153 4.153 16 C -0.054 4.054 17 C -0.100 4.100 18 C -0.159 4.159 19 C 0.065 3.935 20 O -0.308 6.308 21 C -0.157 4.157 22 C -0.028 4.028 23 Cl -0.029 7.029 24 H 0.107 0.893 25 H 0.034 0.966 26 H 0.044 0.956 27 H 0.074 0.926 28 H 0.220 0.780 29 H 0.120 0.880 30 H 0.120 0.880 31 H 0.154 0.846 32 H 0.151 0.849 33 H 0.248 0.752 34 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.434 -0.828 -17.111 17.472 hybrid contribution 0.135 -0.502 1.208 1.315 sum 3.569 -1.329 -15.903 16.353 Atomic orbital electron populations 1.22062 0.98508 0.99030 1.00853 1.18717 0.91000 0.93918 0.79964 0.93451 1.21227 1.32402 1.13208 0.90369 0.92092 1.24890 0.94811 0.94967 0.99049 1.69908 1.35822 1.22517 1.23841 0.86456 0.78593 0.79845 0.82238 1.20578 1.21088 1.19847 1.46494 1.65303 1.13494 1.10480 1.20096 0.78957 0.87585 0.84311 1.90674 1.50818 1.15905 1.84966 1.20819 1.04250 0.98032 0.92206 1.19283 0.91941 0.98420 0.95793 1.20866 0.97203 0.95743 0.96225 1.21424 0.98560 1.00025 0.95866 1.18190 0.91884 0.94489 0.88981 1.84808 1.94470 1.20229 1.31286 1.21199 0.98574 0.98734 0.97170 1.20532 0.87350 0.98201 0.96704 1.98383 1.30993 1.81613 1.91898 0.89262 0.96621 0.95570 0.92601 0.77976 0.88001 0.88035 0.84605 0.84905 0.75214 0.84529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.67 9.26 37.16 0.34 -3.33 16 2 C 0.27 6.75 2.56 -69.08 -0.18 6.58 16 3 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 4 C -0.53 -14.08 8.73 -34.44 -0.30 -14.38 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -24.93 11.32 55.43 0.63 -24.30 16 8 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 9 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 12 N -0.71 -14.56 5.07 -54.93 -0.28 -14.84 16 13 C 0.51 9.84 7.56 -10.99 -0.08 9.76 16 14 O -0.55 -12.80 15.61 5.55 0.09 -12.71 16 15 C -0.11 -1.59 5.29 -29.03 -0.15 -1.74 16 16 C -0.05 -0.76 4.43 -104.56 -0.46 -1.22 16 17 C -0.08 -1.01 9.66 -39.61 -0.38 -1.39 16 18 C -0.14 -1.59 9.99 -39.43 -0.39 -1.99 16 19 C 0.11 1.29 6.70 -39.22 -0.26 1.03 16 20 O -0.50 -4.95 13.50 -19.43 -0.26 -5.21 16 21 C -0.14 -1.77 9.77 -39.40 -0.38 -2.15 16 22 C 0.00 -0.01 6.19 -39.52 -0.24 -0.26 16 23 Cl -0.06 -0.86 27.31 -51.86 -1.42 -2.27 16 24 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 25 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 28 H 0.39 6.81 8.54 -40.82 -0.35 6.47 16 29 H 0.10 1.29 7.35 -51.93 -0.38 0.91 16 30 H 0.10 1.14 8.00 -51.93 -0.42 0.72 16 31 H 0.14 1.38 8.04 -52.49 -0.42 0.96 16 32 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 33 H 0.39 2.12 9.06 45.56 0.41 2.53 16 34 H 0.14 1.55 8.06 -52.49 -0.42 1.13 16 LS Contribution 312.19 15.07 4.70 4.70 Total: -1.00 -32.42 312.19 -7.25 -39.67 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -3.09 Total: 6.85 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: -2.60 Total: -7.41 kcal Atomic # 7 Polarization: -39.50 SS G_CDS: 0.35 Total: -39.15 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: -0.18 Total: -17.93 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -1.42 Total: -2.27 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.42 -7.25 -39.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127940058.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.587 kcal (2) G-P(sol) polarization free energy of solvation -32.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds