Wall clock time and date at job start Tue Mar 31 2020 05:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46688 * 2 1 4 4 C 1.50697 * 109.47009 * 120.00132 * 2 1 3 5 5 H 1.07994 * 120.00285 * 120.00412 * 4 2 1 6 6 C 1.37878 * 119.99936 * 299.99875 * 4 2 1 7 7 N 1.31519 * 120.00176 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00143 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47153 * 90.00028 * 8 6 4 10 10 H 1.48498 * 109.47560 * 210.00307 * 8 6 4 11 11 H 1.48501 * 109.47047 * 330.00318 * 8 6 4 12 12 N 1.46502 * 109.47202 * 240.00078 * 2 1 3 13 13 C 1.34776 * 120.00021 * 85.00004 * 12 2 1 14 14 O 1.21288 * 119.99927 * 0.02562 * 13 12 2 15 15 C 1.50697 * 120.00128 * 180.02562 * 13 12 2 16 16 C 1.50704 * 109.47214 * 179.97438 * 15 13 12 17 17 C 1.38269 * 119.94843 * 100.00142 * 16 15 13 18 18 C 1.38122 * 120.06430 * 180.25715 * 17 16 15 19 19 C 1.38769 * 119.97151 * 359.48610 * 18 17 16 20 20 O 1.35901 * 120.04782 * 180.25999 * 19 18 17 21 21 C 1.38679 * 119.90006 * 0.48749 * 19 18 17 22 22 C 1.38283 * 119.93501 * 359.76987 * 21 19 18 23 23 Cl 1.73596 * 119.98843 * 179.97438 * 22 21 19 24 24 H 1.09001 * 109.47244 * 299.99992 * 1 2 3 25 25 H 1.09000 * 109.46921 * 60.00211 * 1 2 3 26 26 H 1.09001 * 109.47145 * 179.97438 * 1 2 3 27 27 H 0.97000 * 120.00364 * 179.97438 * 7 6 4 28 28 H 0.96997 * 119.99600 * 265.00018 * 12 2 1 29 29 H 1.08996 * 109.47113 * 59.99690 * 15 13 12 30 30 H 1.09000 * 109.46967 * 300.00209 * 15 13 12 31 31 H 1.08002 * 119.96480 * 359.97161 * 17 16 15 32 32 H 1.08002 * 120.01165 * 179.74073 * 18 17 16 33 33 H 0.96703 * 113.99674 * 270.23111 * 20 19 18 34 34 H 1.07999 * 120.03510 * 179.78549 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5884 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9427 0.8297 2.6034 8 14 2.3224 -1.1195 4.0079 9 1 3.6304 -0.5440 4.4119 10 1 1.3444 -0.9491 5.1123 11 1 2.4880 -2.5653 3.7122 12 7 2.0184 -0.6906 -1.1962 13 6 2.1471 -0.0182 -2.3571 14 8 1.8591 1.1587 -2.4115 15 6 2.6489 -0.7287 -3.5877 16 6 2.6991 0.2395 -4.7415 17 6 3.9014 0.8167 -5.1064 18 6 3.9493 1.7085 -6.1601 19 6 2.7915 2.0174 -6.8599 20 8 2.8378 2.8906 -7.9003 21 6 1.5864 1.4374 -6.4931 22 6 1.5422 0.5492 -5.4342 23 17 0.0343 -0.1772 -4.9735 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7081 1.1609 3.4844 28 1 2.2491 -1.6317 -1.1526 29 1 1.9760 -1.5505 -3.8326 30 1 3.6480 -1.1213 -3.3986 31 1 4.8032 0.5734 -4.5641 32 1 4.8881 2.1620 -6.4418 33 1 2.6979 3.8131 -7.6460 34 1 0.6835 1.6790 -7.0341 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127940058.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:53 Heat of formation + Delta-G solvation = -94.258684 kcal Electronic energy + Delta-G solvation = -19509.400308 eV Core-core repulsion = 16238.970048 eV Total energy + Delta-G solvation = -3270.430259 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.15009 -40.15156 -38.16225 -37.17132 -36.59042 -34.29274 -33.15791 -31.82635 -30.82768 -27.84234 -27.30105 -23.93992 -23.63413 -22.36641 -21.06262 -19.50211 -18.90358 -17.53097 -17.30657 -17.29001 -16.82873 -16.38462 -15.89556 -15.65005 -15.17122 -14.83322 -14.58056 -14.34259 -13.99055 -13.79776 -13.48421 -13.07172 -12.95664 -12.84273 -12.67775 -12.53504 -12.31814 -12.24172 -12.11400 -11.87103 -11.59765 -11.08860 -10.73976 -10.55638 -9.88414 -9.68453 -9.50087 -8.15823 -6.33287 0.05316 0.18093 1.11372 1.46170 1.46468 1.57278 1.91073 2.30879 2.43798 2.85614 3.14719 3.23543 3.66795 3.75918 4.04327 4.18938 4.27310 4.44481 4.56065 4.71829 4.77520 4.83942 4.94460 5.05551 5.12807 5.28508 5.36235 5.46068 5.63683 5.66785 5.72126 5.93948 6.12394 6.75526 6.77906 7.03222 7.34990 7.63363 8.90404 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.031014 B = 0.003876 C = 0.003704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.614615 B = 7221.972424 C = 7557.194682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.273 3.727 3 H -0.002 1.002 4 C -0.545 4.545 5 H 0.075 0.925 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.972 3.028 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.259 1.259 12 N -0.708 5.708 13 C 0.504 3.496 14 O -0.589 6.589 15 C -0.099 4.099 16 C -0.078 4.078 17 C -0.084 4.084 18 C -0.140 4.140 19 C 0.114 3.886 20 O -0.501 6.501 21 C -0.151 4.151 22 C -0.018 4.018 23 Cl -0.073 7.073 24 H 0.064 0.936 25 H 0.009 0.991 26 H 0.038 0.962 27 H 0.264 0.736 28 H 0.405 0.595 29 H 0.117 0.883 30 H 0.137 0.863 31 H 0.159 0.841 32 H 0.160 0.840 33 H 0.413 0.587 34 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.498 -2.441 -17.658 18.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.169 3.831 3 H 0.016 0.984 4 C -0.584 4.584 5 H 0.093 0.907 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.797 3.203 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.183 1.183 12 N -0.357 5.357 13 C 0.291 3.709 14 O -0.470 6.470 15 C -0.139 4.139 16 C -0.079 4.079 17 C -0.102 4.102 18 C -0.158 4.158 19 C 0.069 3.931 20 O -0.315 6.315 21 C -0.170 4.170 22 C -0.045 4.045 23 Cl -0.044 7.044 24 H 0.083 0.917 25 H 0.028 0.972 26 H 0.057 0.943 27 H 0.074 0.926 28 H 0.240 0.760 29 H 0.135 0.865 30 H 0.155 0.845 31 H 0.176 0.824 32 H 0.177 0.823 33 H 0.272 0.728 34 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 5.163 -2.056 -17.833 18.679 hybrid contribution -0.383 -0.012 1.309 1.364 sum 4.781 -2.068 -16.524 17.326 Atomic orbital electron populations 1.21877 0.98662 0.99199 0.99301 1.18278 0.90824 0.91898 0.82064 0.98432 1.21572 1.32444 1.13549 0.90788 0.90696 1.25810 0.94883 0.95590 1.02367 1.70064 1.37058 1.24086 1.24522 0.85348 0.77743 0.79244 0.78013 1.20293 1.21161 1.18298 1.46252 1.65531 1.14224 1.09700 1.20994 0.77555 0.87160 0.85162 1.90651 1.52457 1.18176 1.85731 1.20765 1.06181 0.97769 0.89163 1.19440 0.92669 0.99566 0.96251 1.21194 0.97318 0.95204 0.96445 1.21743 0.99447 0.99437 0.95213 1.18292 0.91657 0.94328 0.88788 1.84756 1.94373 1.21547 1.30798 1.21376 0.99600 0.98802 0.97199 1.20748 0.87001 0.99097 0.97671 1.98369 1.31994 1.81921 1.92103 0.91722 0.97188 0.94329 0.92643 0.76004 0.86494 0.84508 0.82371 0.82288 0.72766 0.83806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.77 9.26 71.98 0.67 -6.11 16 2 C 0.27 14.13 2.56 44.24 0.11 14.24 16 3 H 0.00 -0.14 7.58 -2.39 -0.02 -0.15 16 4 C -0.55 -28.63 8.73 25.60 0.22 -28.41 16 5 H 0.07 3.64 7.74 -2.91 -0.02 3.61 16 6 C 0.01 0.72 5.30 84.65 0.45 1.16 16 7 N -0.92 -52.88 11.32 21.45 0.24 -52.64 16 8 Si 0.97 41.71 29.54 68.60 2.03 43.73 16 9 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 10 H -0.29 -12.21 7.11 99.48 0.71 -11.50 16 11 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 12 N -0.71 -28.71 5.07 -446.09 -2.26 -30.97 16 13 C 0.50 19.37 7.56 87.66 0.66 20.03 16 14 O -0.59 -28.15 15.61 -3.05 -0.05 -28.19 16 15 C -0.10 -2.61 5.29 29.10 0.15 -2.45 16 16 C -0.08 -2.10 4.43 -19.83 -0.09 -2.19 16 17 C -0.08 -1.85 9.66 22.25 0.21 -1.64 16 18 C -0.14 -2.81 9.99 22.37 0.22 -2.59 16 19 C 0.11 2.49 6.70 22.50 0.15 2.64 16 20 O -0.50 -8.80 13.50 -92.44 -1.25 -10.05 16 21 C -0.15 -3.74 9.77 22.39 0.22 -3.52 16 22 C -0.02 -0.52 6.19 22.31 0.14 -0.38 16 23 Cl -0.07 -2.16 27.31 -2.72 -0.07 -2.23 16 24 H 0.06 3.65 6.07 -2.39 -0.01 3.63 16 25 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 26 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 28 H 0.40 13.57 8.54 -92.71 -0.79 12.78 16 29 H 0.12 2.72 7.35 -2.39 -0.02 2.70 16 30 H 0.14 2.59 8.00 -2.39 -0.02 2.58 16 31 H 0.16 2.69 8.04 -2.91 -0.02 2.67 16 32 H 0.16 2.30 8.06 -2.91 -0.02 2.27 16 33 H 0.41 3.47 9.06 -74.06 -0.67 2.80 16 34 H 0.14 3.20 8.06 -2.91 -0.02 3.17 16 Total: -1.00 -71.28 312.19 1.45 -69.83 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: -0.31 Total: 19.73 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: 3.13 Total: -9.21 kcal Atomic # 7 Polarization: -81.59 SS G_CDS: -2.02 Total: -83.61 kcal Atomic # 8 Polarization: -36.94 SS G_CDS: -1.30 Total: -38.24 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.73 kcal Atomic # 17 Polarization: -2.16 SS G_CDS: -0.07 Total: -2.23 kcal Total: -71.28 1.45 -69.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127940058.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.428 kcal (2) G-P(sol) polarization free energy of solvation -71.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds