Wall clock time and date at job start Tue Mar 31 2020 06:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31638 * 1 3 3 Si 1.86798 * 119.99826 * 2 1 4 4 H 1.48501 * 109.46939 * 270.00000 * 3 2 1 5 5 H 1.48496 * 109.47561 * 30.00146 * 3 2 1 6 6 H 1.48498 * 109.46932 * 150.00478 * 3 2 1 7 7 C 1.38796 * 119.99705 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00433 * 0.02562 * 7 2 1 9 9 S 1.76206 * 119.99847 * 179.97438 * 7 2 1 10 10 C 1.81000 * 99.99929 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46638 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.46997 * 180.02562 * 11 10 9 13 13 N 1.46896 * 109.47501 * 180.02562 * 12 11 10 14 14 C 1.46978 * 111.00318 * 169.99900 * 13 12 11 15 15 C 1.53148 * 109.48704 * 52.01537 * 14 13 12 16 16 C 1.52333 * 108.18973 * 50.41870 * 15 14 13 17 17 C 1.38955 * 124.35719 * 163.33179 * 16 15 14 18 18 C 1.33031 * 115.62279 * 180.02562 * 17 16 15 19 19 S 1.75784 * 109.60820 * 359.97438 * 18 17 16 20 20 C 1.34804 * 121.88988 * 343.32999 * 16 15 14 21 21 C 1.47107 * 110.99824 * 293.82748 * 13 12 11 22 22 H 0.96996 * 119.99710 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47216 * 300.00172 * 10 9 7 24 24 H 1.09001 * 109.46620 * 60.00275 * 10 9 7 25 25 H 1.09000 * 109.47486 * 300.00041 * 11 10 9 26 26 H 1.09001 * 109.47362 * 60.00764 * 11 10 9 27 27 H 1.09000 * 109.46866 * 300.00212 * 12 11 10 28 28 H 1.08996 * 109.47261 * 59.99820 * 12 11 10 29 29 H 1.09000 * 109.46863 * 172.02555 * 14 13 12 30 30 H 1.09004 * 109.46360 * 292.01382 * 14 13 12 31 31 H 1.08999 * 109.71628 * 170.08303 * 15 14 13 32 32 H 1.08997 * 109.72140 * 290.69704 * 15 14 13 33 33 H 1.08001 * 122.19270 * 0.03410 * 17 16 15 34 34 H 1.07999 * 125.20071 * 180.02562 * 18 17 16 35 35 H 1.09002 * 109.62525 * 46.88290 * 21 13 12 36 36 H 1.08999 * 109.62766 * 167.45530 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4479 2.6527 0.7000 6 1 3.5479 1.4401 0.6999 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1374 0.0005 9 16 3.7724 -1.2021 -0.0001 10 6 4.0866 -2.9846 0.0001 11 6 5.5957 -3.2363 -0.0010 12 6 5.8615 -4.7431 -0.0015 13 7 7.3104 -4.9849 -0.0020 14 6 7.6077 -6.4045 0.2359 15 6 6.8083 -7.2655 -0.7465 16 6 7.0327 -6.7179 -2.1502 17 6 6.7505 -7.4154 -3.3184 18 6 7.0147 -6.7705 -4.4516 19 16 7.6619 -5.1774 -4.0866 20 6 7.5344 -5.4847 -2.3618 21 6 7.9213 -4.5241 -1.2584 22 1 -0.4849 0.8400 0.0004 23 1 3.6440 -3.4314 0.8904 24 1 3.6433 -3.4317 -0.8896 25 1 6.0380 -2.7895 -0.8915 26 1 6.0394 -2.7891 0.8885 27 1 5.4192 -5.1902 0.8888 28 1 5.4179 -5.1900 -0.8911 29 1 8.6733 -6.5818 0.0907 30 1 7.3316 -6.6672 1.2572 31 1 7.1531 -8.2982 -0.6952 32 1 5.7481 -7.2189 -0.4980 33 1 6.3432 -8.4156 -3.3073 34 1 6.8552 -7.1651 -5.4442 35 1 7.5567 -3.5252 -1.4980 36 1 9.0060 -4.5054 -1.1528 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132905220.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:16 Heat of formation + Delta-G solvation = 23.930432 kcal Electronic energy + Delta-G solvation = -17419.089083 eV Core-core repulsion = 14734.413561 eV Total energy + Delta-G solvation = -2684.675523 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.09868 -36.67700 -33.41539 -32.41591 -31.13455 -29.89762 -26.56528 -25.60820 -24.16201 -23.67328 -21.74059 -20.54204 -18.19359 -17.47861 -17.30954 -15.83401 -15.38377 -15.24480 -15.06629 -14.92571 -14.16744 -13.96883 -13.62856 -13.04356 -13.00329 -12.83361 -12.49637 -12.17683 -11.96681 -11.75364 -11.64129 -11.56325 -11.25010 -11.02785 -11.00802 -10.67968 -10.36216 -10.11387 -9.75315 -8.98487 -8.69623 -8.53878 -8.50806 -8.43798 -6.91520 -6.26452 -3.98351 0.83961 1.49708 1.87468 2.50657 3.02577 3.31745 3.47393 3.56420 3.86610 4.33709 4.55881 4.68408 4.81802 4.84895 4.89780 4.98430 5.12463 5.19858 5.22762 5.30714 5.40357 5.52903 5.58004 5.66063 5.67942 5.76876 5.86895 5.90496 6.01515 6.19247 6.25027 6.36164 6.50096 6.65375 6.88696 6.96406 7.97449 8.46329 9.19636 10.83156 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.023833 B = 0.003771 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.569538 B = 7423.937717 C = 7780.727871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.092 3.908 3 Si 0.861 3.139 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.237 1.237 7 C -0.502 4.502 8 H 0.087 0.913 9 S -0.215 6.215 10 C -0.081 4.081 11 C -0.097 4.097 12 C 0.053 3.947 13 N -0.521 5.521 14 C 0.053 3.947 15 C -0.093 4.093 16 C -0.111 4.111 17 C -0.126 4.126 18 C -0.219 4.219 19 S 0.107 5.893 20 C -0.209 4.209 21 C 0.119 3.881 22 H 0.270 0.730 23 H 0.067 0.933 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.043 0.957 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.135 0.865 34 H 0.163 0.837 35 H 0.097 0.903 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.843 -15.132 -4.730 23.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.116 4.116 3 Si 0.686 3.314 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.161 1.161 7 C -0.649 4.649 8 H 0.105 0.895 9 S 0.013 5.987 10 C -0.230 4.230 11 C -0.136 4.136 12 C -0.076 4.076 13 N -0.242 5.242 14 C -0.075 4.075 15 C -0.134 4.134 16 C -0.123 4.123 17 C -0.157 4.157 18 C -0.354 4.354 19 S 0.372 5.628 20 C -0.329 4.329 21 C -0.011 4.011 22 H 0.080 0.920 23 H 0.086 0.914 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.094 0.906 27 H 0.095 0.905 28 H 0.061 0.939 29 H 0.095 0.905 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.153 0.847 34 H 0.180 0.820 35 H 0.115 0.885 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 19.095 -12.634 -5.230 23.486 hybrid contribution -1.776 -2.019 -0.147 2.693 sum 17.318 -14.653 -5.377 23.314 Atomic orbital electron populations 1.69944 1.05938 1.27673 1.48433 1.24792 0.94495 0.98992 0.93347 0.86671 0.81790 0.83211 0.79692 1.19403 1.20118 1.16113 1.22134 0.87156 0.97390 1.58247 0.89471 1.84137 1.11595 1.05454 1.97521 1.22997 0.97331 0.99111 1.03546 1.21353 0.94899 0.94277 1.03074 1.22247 0.86688 0.97333 1.01321 1.62584 1.12773 1.17520 1.31320 1.22229 1.00038 0.86443 0.98815 1.21203 1.01795 0.99949 0.90461 1.19524 1.03004 0.93693 0.96089 1.19941 1.03216 1.01489 0.91051 1.25404 1.09155 0.98395 1.02457 1.84213 1.63302 1.15501 0.99777 1.25812 1.08557 1.00326 0.98161 1.21117 0.99949 0.96366 0.83696 0.92009 0.91382 0.91729 0.91716 0.90617 0.90545 0.93878 0.90527 0.89788 0.90238 0.90160 0.84694 0.81977 0.88519 0.89001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -27.05 13.97 55.49 0.78 -26.28 16 2 C 0.09 2.71 5.50 -17.43 -0.10 2.62 16 3 Si 0.86 21.76 27.74 -169.99 -4.72 17.04 16 4 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.24 -5.87 6.74 56.52 0.38 -5.49 16 7 C -0.50 -14.75 10.04 30.94 0.31 -14.44 16 8 H 0.09 2.73 8.03 -52.49 -0.42 2.31 16 9 S -0.21 -5.31 19.41 -107.50 -2.09 -7.40 16 10 C -0.08 -1.59 5.67 37.16 0.21 -1.38 16 11 C -0.10 -1.53 5.18 -26.73 -0.14 -1.67 16 12 C 0.05 0.70 3.96 -3.82 -0.02 0.68 16 13 N -0.52 -6.00 4.98 -235.34 -1.17 -7.17 16 14 C 0.05 0.50 5.92 -3.70 -0.02 0.47 16 15 C -0.09 -0.87 5.62 -27.00 -0.15 -1.02 16 16 C -0.11 -1.23 5.13 -104.76 -0.54 -1.76 16 17 C -0.13 -1.31 10.03 -41.12 -0.41 -1.73 16 18 C -0.22 -2.20 11.21 28.92 0.32 -1.88 16 19 S 0.11 1.17 23.32 -107.50 -2.51 -1.34 16 20 C -0.21 -2.42 5.82 -35.22 -0.21 -2.62 16 21 C 0.12 1.33 6.01 -4.55 -0.03 1.30 16 22 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 23 H 0.07 1.34 8.14 -51.92 -0.42 0.91 16 24 H 0.06 1.30 8.14 -51.92 -0.42 0.88 16 25 H 0.06 1.02 6.33 -51.93 -0.33 0.69 16 26 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.08 0.96 8.08 -51.93 -0.42 0.54 16 28 H 0.04 0.60 6.00 -51.93 -0.31 0.29 16 29 H 0.08 0.66 8.05 -51.93 -0.42 0.25 16 30 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.79 7.14 -51.93 -0.37 0.42 16 33 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 34 H 0.16 1.26 8.06 -52.49 -0.42 0.84 16 35 H 0.10 1.16 6.02 -51.93 -0.31 0.84 16 36 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 313.38 15.07 4.72 4.72 Total: -1.00 -31.36 313.38 -10.86 -42.23 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -5.12 Total: -0.37 kcal Atomic # 6 Polarization: -20.67 SS G_CDS: -0.76 Total: -21.43 kcal Atomic # 7 Polarization: -33.05 SS G_CDS: -0.40 Total: -33.45 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.72 Total: 17.04 kcal Atomic # 16 Polarization: -4.14 SS G_CDS: -4.59 Total: -8.74 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.36 -10.86 -42.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132905220.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.155 kcal (2) G-P(sol) polarization free energy of solvation -31.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds