Wall clock time and date at job start Tue Mar 31 2020 05:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47179 * 2 1 4 4 O 1.42898 * 109.47391 * 180.02562 * 3 2 1 5 5 C 1.35935 * 117.00580 * 180.02562 * 4 3 2 6 6 C 1.38545 * 120.08036 * 359.72745 * 5 4 3 7 7 C 1.38239 * 120.03733 * 179.72244 * 6 5 4 8 8 C 1.38519 * 120.20825 * 0.55559 * 7 6 5 9 9 Cl 1.73601 * 119.91189 * 179.74326 * 8 7 6 10 10 C 1.38178 * 120.17005 * 359.72372 * 8 7 6 11 11 C 1.38932 * 119.95902 * 359.97438 * 10 8 7 12 12 N 1.39556 * 120.10117 * 179.97438 * 11 10 8 13 13 C 1.34777 * 120.00750 * 24.84716 * 12 11 10 14 14 O 1.21776 * 119.99291 * 5.52411 * 13 12 11 15 15 C 1.41797 * 120.00350 * 185.52845 * 13 12 11 16 16 H 1.08003 * 120.00154 * 0.02562 * 15 13 12 17 17 C 1.40137 * 120.00143 * 179.97438 * 15 13 12 18 18 N 1.30637 * 119.99866 * 0.02562 * 17 15 13 19 19 Si 1.86791 * 120.00324 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47176 * 89.99936 * 19 17 15 21 21 H 1.48496 * 109.47444 * 210.00077 * 19 17 15 22 22 H 1.48500 * 109.47104 * 330.00493 * 19 17 15 23 23 H 1.09000 * 109.47413 * 59.99447 * 1 2 3 24 24 H 1.09003 * 109.47402 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46883 * 299.99422 * 1 2 3 26 26 H 1.09004 * 109.46883 * 240.00578 * 2 1 3 27 27 H 1.09000 * 109.47413 * 120.00553 * 2 1 3 28 28 H 1.09000 * 109.47400 * 300.00561 * 3 2 1 29 29 H 1.09004 * 109.46741 * 60.00491 * 3 2 1 30 30 H 1.07997 * 119.97780 * 359.97320 * 6 5 4 31 31 H 1.08000 * 119.89521 * 180.25266 * 7 6 5 32 32 H 1.08008 * 120.01972 * 180.02562 * 10 8 7 33 33 H 0.97004 * 119.99438 * 204.84490 * 12 11 10 34 34 H 0.96999 * 120.00001 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 -0.0006 5 6 4.0862 2.6537 -0.0001 6 6 3.3333 3.8167 -0.0048 7 6 3.9619 5.0479 0.0014 8 6 5.3450 5.1244 0.0008 9 17 6.1263 6.6746 0.0020 10 6 6.1043 3.9699 -0.0003 11 6 5.4799 2.7288 -0.0003 12 7 6.2438 1.5609 -0.0020 13 6 7.4997 1.5763 0.4869 14 8 7.9327 2.5813 1.0212 15 6 8.3168 0.4225 0.3789 16 1 7.9330 -0.4686 -0.0954 17 6 9.6229 0.4387 0.8867 18 7 10.0874 1.5168 1.4600 19 14 10.6990 -1.0814 0.7452 20 1 11.4596 -1.0326 -0.5293 21 1 11.6480 -1.1242 1.8866 22 1 9.8450 -2.2961 0.7657 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 1.6766 1.9564 -0.8899 29 1 1.6767 1.9562 0.8901 30 1 2.2548 3.7614 -0.0093 31 1 3.3728 5.9531 0.0019 32 1 7.1826 4.0323 -0.0004 33 1 5.8709 0.7380 -0.3550 34 1 10.9912 1.5279 1.8119 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153616226.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:10 Heat of formation + Delta-G solvation = -67.180497 kcal Electronic energy + Delta-G solvation = -19573.102850 eV Core-core repulsion = 16303.846789 eV Total energy + Delta-G solvation = -3269.256061 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.03649 -38.07183 -36.94406 -35.69957 -33.93148 -33.46391 -32.41089 -29.70816 -28.86253 -26.68812 -26.23433 -22.92856 -21.80432 -21.30962 -19.87575 -17.97230 -17.45228 -16.41497 -16.20459 -15.83271 -15.24512 -14.60985 -14.25905 -14.22032 -13.75602 -13.63629 -13.05734 -12.72340 -12.51600 -12.33498 -12.22690 -11.77741 -11.74278 -11.40544 -11.31162 -11.15227 -10.91536 -10.88427 -10.64010 -10.41840 -10.35622 -10.24436 -9.47940 -8.92002 -8.05599 -7.65343 -6.90244 -6.38621 -4.91623 1.72337 1.82435 2.65986 3.05192 3.12650 3.16173 3.36654 3.96615 4.06323 4.45912 4.59041 4.78227 4.78989 5.10092 5.15641 5.23188 5.29124 5.45357 5.51893 5.64774 5.76017 5.77631 5.93767 6.01261 6.04982 6.26129 6.47764 6.56001 6.80493 7.17058 7.24809 7.57532 7.84084 8.01929 8.16235 8.78664 9.25417 10.35590 10.54992 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.011281 B = 0.005945 C = 0.003944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2481.537631 B = 4708.325501 C = 7097.361476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.125 4.125 3 C 0.062 3.938 4 O -0.314 6.314 5 C 0.067 3.933 6 C -0.175 4.175 7 C -0.129 4.129 8 C -0.039 4.039 9 Cl -0.085 7.085 10 C -0.106 4.106 11 C 0.188 3.812 12 N -0.686 5.686 13 C 0.541 3.459 14 O -0.564 6.564 15 C -0.535 4.535 16 H 0.071 0.929 17 C 0.088 3.912 18 N -0.745 5.745 19 Si 0.913 3.087 20 H -0.269 1.269 21 H -0.277 1.277 22 H -0.263 1.263 23 H 0.056 0.944 24 H 0.062 0.938 25 H 0.056 0.944 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.128 0.872 31 H 0.124 0.876 32 H 0.170 0.830 33 H 0.398 0.602 34 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.663 0.299 -3.776 15.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.014 4.014 4 O -0.228 6.228 5 C 0.019 3.981 6 C -0.195 4.195 7 C -0.149 4.149 8 C -0.067 4.067 9 Cl -0.057 7.057 10 C -0.128 4.128 11 C 0.087 3.913 12 N -0.327 5.327 13 C 0.351 3.649 14 O -0.448 6.448 15 C -0.570 4.570 16 H 0.089 0.911 17 C -0.135 4.135 18 N -0.372 5.372 19 Si 0.737 3.263 20 H -0.195 1.195 21 H -0.202 1.202 22 H -0.187 1.187 23 H 0.075 0.925 24 H 0.081 0.919 25 H 0.075 0.925 26 H 0.092 0.908 27 H 0.093 0.907 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.146 0.854 31 H 0.142 0.858 32 H 0.188 0.812 33 H 0.232 0.768 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.931 0.952 -3.289 14.345 hybrid contribution 0.109 -0.820 -0.175 0.845 sum -13.822 0.132 -3.464 14.250 Atomic orbital electron populations 1.21682 0.94563 1.02290 1.02027 1.21478 0.95691 0.95213 1.03840 1.22762 0.79246 0.98358 1.00989 1.85997 1.20485 1.26746 1.89554 1.18796 0.90735 0.84514 1.04097 1.20736 0.99147 0.91296 1.08307 1.20504 0.92192 0.97372 1.04868 1.20616 0.92213 0.86187 1.07637 1.98318 1.81546 1.28568 1.97217 1.21444 1.02975 0.88092 1.00243 1.17221 0.86469 0.88870 0.98788 1.44071 1.16190 1.08702 1.63784 1.17105 0.78666 0.90191 0.78954 1.90606 1.71849 1.35040 1.47342 1.20049 0.97962 0.99236 1.39712 0.91072 1.25762 0.98041 0.96892 0.92840 1.70006 1.15554 1.26951 1.24733 0.86268 0.79682 0.81751 0.78560 1.19460 1.20218 1.18677 0.92504 0.91909 0.92479 0.90827 0.90749 0.92450 0.92394 0.85437 0.85808 0.81249 0.76812 0.91564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.91 37.16 0.37 -0.73 16 2 C -0.12 -1.23 6.30 -26.73 -0.17 -1.39 16 3 C 0.06 0.73 4.74 37.16 0.18 0.90 16 4 O -0.31 -5.12 9.55 -19.54 -0.19 -5.31 16 5 C 0.07 1.21 6.71 -38.97 -0.26 0.95 16 6 C -0.18 -2.72 9.03 -39.47 -0.36 -3.07 16 7 C -0.13 -2.07 9.82 -39.48 -0.39 -2.45 16 8 C -0.04 -0.74 6.32 -39.50 -0.25 -0.99 16 9 Cl -0.09 -1.47 28.95 -51.86 -1.50 -2.97 16 10 C -0.11 -2.34 8.49 -39.35 -0.33 -2.67 16 11 C 0.19 4.07 6.44 -83.59 -0.54 3.53 16 12 N -0.69 -15.94 5.26 -12.31 -0.06 -16.00 16 13 C 0.54 15.02 7.38 -14.90 -0.11 14.91 16 14 O -0.56 -17.40 12.03 5.12 0.06 -17.34 16 15 C -0.53 -14.52 9.32 -37.51 -0.35 -14.87 16 16 H 0.07 1.76 7.85 -52.48 -0.41 1.35 16 17 C 0.09 2.34 5.50 -17.35 -0.10 2.25 16 18 N -0.75 -21.32 11.73 55.56 0.65 -20.67 16 19 Si 0.91 19.27 29.56 -169.99 -5.02 14.24 16 20 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 21 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 22 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 23 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.06 0.60 7.65 -51.93 -0.40 0.20 16 29 H 0.06 0.64 7.67 -51.93 -0.40 0.24 16 30 H 0.13 1.55 6.30 -52.49 -0.33 1.22 16 31 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 32 H 0.17 4.33 5.78 -52.48 -0.30 4.03 16 33 H 0.40 8.28 8.30 -40.82 -0.34 7.94 16 34 H 0.27 7.06 8.29 -40.82 -0.34 6.72 16 LS Contribution 308.98 15.07 4.66 4.66 Total: -1.00 -31.44 308.98 -7.57 -39.00 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -3.85 Total: 8.03 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: -2.31 Total: -3.64 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: 0.59 Total: -36.67 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: -0.12 Total: -22.65 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.02 Total: 14.24 kcal Atomic # 17 Polarization: -1.47 SS G_CDS: -1.50 Total: -2.97 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.44 -7.57 -39.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153616226.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.179 kcal (2) G-P(sol) polarization free energy of solvation -31.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds