Wall clock time and date at job start Tue Mar 31 2020 05:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47179 * 2 1 4 4 O 1.42898 * 109.47391 * 180.02562 * 3 2 1 5 5 C 1.35935 * 117.00580 * 180.02562 * 4 3 2 6 6 C 1.38545 * 120.08036 * 359.72745 * 5 4 3 7 7 C 1.38239 * 120.03733 * 179.72244 * 6 5 4 8 8 C 1.38519 * 120.20825 * 0.55559 * 7 6 5 9 9 Cl 1.73601 * 119.91189 * 179.74326 * 8 7 6 10 10 C 1.38178 * 120.17005 * 359.72372 * 8 7 6 11 11 C 1.38932 * 119.95902 * 359.97438 * 10 8 7 12 12 N 1.39556 * 120.10117 * 179.97438 * 11 10 8 13 13 C 1.34777 * 120.00750 * 24.84716 * 12 11 10 14 14 O 1.21776 * 119.99291 * 5.52411 * 13 12 11 15 15 C 1.41797 * 120.00350 * 185.52845 * 13 12 11 16 16 H 1.08003 * 120.00154 * 0.02562 * 15 13 12 17 17 C 1.40137 * 120.00143 * 179.97438 * 15 13 12 18 18 N 1.30637 * 119.99866 * 0.02562 * 17 15 13 19 19 Si 1.86791 * 120.00324 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47176 * 89.99936 * 19 17 15 21 21 H 1.48496 * 109.47444 * 210.00077 * 19 17 15 22 22 H 1.48500 * 109.47104 * 330.00493 * 19 17 15 23 23 H 1.09000 * 109.47413 * 59.99447 * 1 2 3 24 24 H 1.09003 * 109.47402 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46883 * 299.99422 * 1 2 3 26 26 H 1.09004 * 109.46883 * 240.00578 * 2 1 3 27 27 H 1.09000 * 109.47413 * 120.00553 * 2 1 3 28 28 H 1.09000 * 109.47400 * 300.00561 * 3 2 1 29 29 H 1.09004 * 109.46741 * 60.00491 * 3 2 1 30 30 H 1.07997 * 119.97780 * 359.97320 * 6 5 4 31 31 H 1.08000 * 119.89521 * 180.25266 * 7 6 5 32 32 H 1.08008 * 120.01972 * 180.02562 * 10 8 7 33 33 H 0.97004 * 119.99438 * 204.84490 * 12 11 10 34 34 H 0.96999 * 120.00001 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 -0.0006 5 6 4.0862 2.6537 -0.0001 6 6 3.3333 3.8167 -0.0048 7 6 3.9619 5.0479 0.0014 8 6 5.3450 5.1244 0.0008 9 17 6.1263 6.6746 0.0020 10 6 6.1043 3.9699 -0.0003 11 6 5.4799 2.7288 -0.0003 12 7 6.2438 1.5609 -0.0020 13 6 7.4997 1.5763 0.4869 14 8 7.9327 2.5813 1.0212 15 6 8.3168 0.4225 0.3789 16 1 7.9330 -0.4686 -0.0954 17 6 9.6229 0.4387 0.8867 18 7 10.0874 1.5168 1.4600 19 14 10.6990 -1.0814 0.7452 20 1 11.4596 -1.0326 -0.5293 21 1 11.6480 -1.1242 1.8866 22 1 9.8450 -2.2961 0.7657 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 1.6766 1.9564 -0.8899 29 1 1.6767 1.9562 0.8901 30 1 2.2548 3.7614 -0.0093 31 1 3.3728 5.9531 0.0019 32 1 7.1826 4.0323 -0.0004 33 1 5.8709 0.7380 -0.3550 34 1 10.9912 1.5279 1.8119 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153616226.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:09 Heat of formation + Delta-G solvation = -87.548010 kcal Electronic energy + Delta-G solvation = -19573.986051 eV Core-core repulsion = 16303.846789 eV Total energy + Delta-G solvation = -3270.139263 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.48932 -39.72702 -38.46625 -37.13723 -35.36503 -34.76097 -34.39291 -31.24954 -30.37593 -28.40717 -27.36130 -24.34641 -23.22598 -22.42484 -21.57218 -19.64210 -18.99298 -17.96363 -17.71332 -17.21009 -16.78331 -16.11475 -15.85913 -15.41522 -15.18205 -14.92040 -14.52826 -14.46095 -14.02085 -13.56355 -13.30277 -13.22541 -12.90902 -12.84695 -12.74406 -12.71407 -12.47088 -12.04166 -11.94988 -11.94150 -11.73838 -11.37900 -11.15536 -10.87291 -9.88659 -9.41276 -8.53644 -8.39335 -7.02921 0.26895 0.35438 1.22832 1.39130 1.39705 1.56243 2.17746 2.21844 2.32093 2.71772 2.92216 3.62231 3.80436 4.01038 4.03162 4.09156 4.28121 4.33712 4.48769 4.59573 4.61308 4.80400 4.83826 5.01254 5.16299 5.19559 5.20870 5.23012 5.35076 5.40312 5.62104 5.86005 6.11722 6.13542 6.55091 6.72138 7.34570 8.35213 8.54093 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.011281 B = 0.005945 C = 0.003944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2481.537631 B = 4708.325501 C = 7097.361476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.123 4.123 3 C 0.050 3.950 4 O -0.330 6.330 5 C 0.079 3.921 6 C -0.162 4.162 7 C -0.106 4.106 8 C -0.053 4.053 9 Cl -0.077 7.077 10 C -0.129 4.129 11 C 0.145 3.855 12 N -0.684 5.684 13 C 0.527 3.473 14 O -0.608 6.608 15 C -0.563 4.563 16 H 0.089 0.911 17 C 0.033 3.967 18 N -0.798 5.798 19 Si 1.002 2.998 20 H -0.260 1.260 21 H -0.270 1.270 22 H -0.248 1.248 23 H 0.067 0.933 24 H 0.070 0.930 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.175 0.825 31 H 0.164 0.836 32 H 0.124 0.876 33 H 0.406 0.594 34 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.427 -0.422 -4.324 17.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.161 4.161 3 C -0.024 4.024 4 O -0.245 6.245 5 C 0.031 3.969 6 C -0.181 4.181 7 C -0.126 4.126 8 C -0.080 4.080 9 Cl -0.049 7.049 10 C -0.152 4.152 11 C 0.045 3.955 12 N -0.327 5.327 13 C 0.337 3.663 14 O -0.496 6.496 15 C -0.598 4.598 16 H 0.107 0.893 17 C -0.185 4.185 18 N -0.427 5.427 19 Si 0.820 3.180 20 H -0.184 1.184 21 H -0.195 1.195 22 H -0.172 1.172 23 H 0.086 0.914 24 H 0.089 0.911 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.081 0.919 28 H 0.097 0.903 29 H 0.090 0.910 30 H 0.192 0.808 31 H 0.182 0.818 32 H 0.142 0.858 33 H 0.241 0.759 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -16.768 0.238 -3.860 17.208 hybrid contribution 0.767 -0.510 -0.031 0.922 sum -16.001 -0.271 -3.891 16.469 Atomic orbital electron populations 1.21661 0.92316 1.03163 1.02874 1.21511 0.97462 0.93994 1.03149 1.23189 0.76560 1.00021 1.02611 1.86005 1.23326 1.26042 1.89100 1.18800 0.89484 0.86241 1.02365 1.21236 1.01205 0.89765 1.05889 1.20983 0.90871 0.99269 1.01457 1.20723 0.93415 0.85570 1.08342 1.98313 1.81808 1.27521 1.97210 1.21094 1.01208 0.90111 1.02755 1.17453 0.88255 0.87931 1.01843 1.43589 1.15291 1.09848 1.63939 1.17449 0.80089 0.89947 0.78805 1.90574 1.73365 1.36376 1.49244 1.20569 0.98981 0.99782 1.40454 0.89329 1.27014 0.99350 1.00652 0.91519 1.70159 1.16444 1.29982 1.26068 0.84957 0.77276 0.76828 0.78917 1.18409 1.19467 1.17162 0.91433 0.91128 0.91812 0.91231 0.91882 0.90285 0.91001 0.80758 0.81820 0.85837 0.75877 0.91000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.91 71.98 0.71 -0.93 16 2 C -0.12 -2.14 6.30 30.59 0.19 -1.95 16 3 C 0.05 1.02 4.74 71.98 0.34 1.36 16 4 O -0.33 -10.26 9.55 -92.82 -0.89 -11.15 16 5 C 0.08 2.77 6.71 22.66 0.15 2.93 16 6 C -0.16 -4.42 9.03 22.34 0.20 -4.21 16 7 C -0.11 -3.06 9.82 22.34 0.22 -2.84 16 8 C -0.05 -1.99 6.32 22.32 0.14 -1.85 16 9 Cl -0.08 -2.66 28.95 -2.72 -0.08 -2.74 16 10 C -0.13 -6.02 8.49 22.42 0.19 -5.83 16 11 C 0.14 6.46 6.44 38.40 0.25 6.71 16 12 N -0.68 -33.38 5.26 -311.04 -1.64 -35.02 16 13 C 0.53 31.02 7.38 85.12 0.63 31.65 16 14 O -0.61 -40.24 12.03 -4.59 -0.06 -40.30 16 15 C -0.56 -31.73 9.32 23.61 0.22 -31.51 16 16 H 0.09 4.48 7.85 -2.91 -0.02 4.45 16 17 C 0.03 1.81 5.50 85.33 0.47 2.28 16 18 N -0.80 -47.81 11.73 21.85 0.26 -47.56 16 19 Si 1.00 39.95 29.56 68.60 2.03 41.98 16 20 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 21 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 22 H -0.25 -9.24 7.11 99.48 0.71 -8.53 16 23 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 24 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 26 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 27 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.08 1.28 7.65 -2.39 -0.02 1.26 16 29 H 0.07 1.27 7.67 -2.38 -0.02 1.25 16 30 H 0.18 3.15 6.30 -2.91 -0.02 3.13 16 31 H 0.16 3.47 8.06 -2.91 -0.02 3.45 16 32 H 0.12 6.91 5.78 -2.91 -0.02 6.89 16 33 H 0.41 17.61 8.30 -92.70 -0.77 16.84 16 34 H 0.28 15.07 8.29 -92.71 -0.77 14.30 16 Total: -1.00 -74.03 308.98 3.71 -70.32 By element: Atomic # 1 Polarization: 28.29 SS G_CDS: 0.37 Total: 28.66 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: 3.72 Total: -4.20 kcal Atomic # 7 Polarization: -81.19 SS G_CDS: -1.38 Total: -82.57 kcal Atomic # 8 Polarization: -50.50 SS G_CDS: -0.94 Total: -51.44 kcal Atomic # 14 Polarization: 39.95 SS G_CDS: 2.03 Total: 41.98 kcal Atomic # 17 Polarization: -2.66 SS G_CDS: -0.08 Total: -2.74 kcal Total: -74.03 3.71 -70.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153616226.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.233 kcal (2) G-P(sol) polarization free energy of solvation -74.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds