Wall clock time and date at job start Tue Mar 31 2020 05:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46493 * 109.47373 * 2 1 4 4 C 1.36879 * 120.00307 * 67.39083 * 3 2 1 5 5 H 1.08000 * 120.00168 * 238.78126 * 4 3 2 6 6 C 1.39040 * 119.99922 * 58.77648 * 4 3 2 7 7 N 1.31360 * 120.00175 * 39.49021 * 6 4 3 8 8 Si 1.86803 * 119.99935 * 219.49227 * 6 4 3 9 9 H 1.48501 * 109.46938 * 90.00170 * 8 6 4 10 10 H 1.48504 * 109.47153 * 209.99630 * 8 6 4 11 11 H 1.48499 * 109.47432 * 329.99915 * 8 6 4 12 12 C 1.34780 * 120.00175 * 247.39653 * 3 2 1 13 13 O 1.21602 * 120.00200 * 191.59710 * 12 3 2 14 14 C 1.47676 * 119.99942 * 11.59337 * 12 3 2 15 15 C 1.39695 * 120.11602 * 26.08786 * 14 12 3 16 16 C 1.37903 * 119.97017 * 180.02562 * 15 14 12 17 17 C 1.38427 * 120.20000 * 0.02562 * 16 15 14 18 18 Cl 1.73601 * 119.88753 * 180.02562 * 17 16 15 19 19 C 1.38970 * 120.22954 * 0.02562 * 17 16 15 20 20 O 1.35936 * 119.98725 * 179.97438 * 19 17 16 21 21 C 1.42895 * 116.99859 * 179.97438 * 20 19 17 22 22 C 1.38393 * 120.02564 * 359.67467 * 19 17 16 23 23 H 1.09003 * 109.46858 * 102.56747 * 1 2 3 24 24 H 1.08995 * 109.47008 * 222.56508 * 1 2 3 25 25 H 1.08998 * 109.46882 * 342.57090 * 1 2 3 26 26 H 1.09002 * 109.47029 * 119.99952 * 2 1 3 27 27 H 1.09002 * 109.47382 * 239.99790 * 2 1 3 28 28 H 0.97005 * 120.00427 * 180.02562 * 7 6 4 29 29 H 1.08005 * 120.01335 * 0.02626 * 15 14 12 30 30 H 1.07997 * 119.89624 * 180.02562 * 16 15 14 31 31 H 1.09002 * 109.47060 * 180.02562 * 21 20 19 32 32 H 1.09001 * 109.47421 * 300.00181 * 21 20 19 33 33 H 1.08999 * 109.47452 * 60.00244 * 21 20 19 34 34 H 1.07996 * 120.09708 * 180.29534 * 22 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 1.8169 2.1783 1.0943 5 1 1.2691 3.1038 0.9947 6 6 2.3174 1.7967 2.3340 7 7 3.5027 1.2369 2.4198 8 14 1.3044 2.0800 3.8777 9 1 0.4507 0.8923 4.1344 10 1 2.2122 2.2959 5.0329 11 1 0.4449 3.2768 3.6932 12 6 2.6660 1.8670 -1.0776 13 8 3.2533 2.9293 -1.0061 14 6 2.6624 1.1090 -2.3450 15 6 1.6154 0.2303 -2.6332 16 6 1.6153 -0.4764 -3.8174 17 6 2.6506 -0.3183 -4.7226 18 17 2.6420 -1.2114 -6.2113 19 6 3.6969 0.5529 -4.4439 20 8 4.7112 0.7039 -5.3361 21 6 5.7535 1.6163 -4.9851 22 6 3.7033 1.2714 -3.2611 23 1 -0.3633 -0.2236 -1.0031 24 1 -0.3633 -0.7569 0.6951 25 1 -0.3633 0.9805 0.3078 26 1 1.8933 -0.5138 0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 3.8518 0.9703 3.2847 29 1 0.8064 0.1044 -1.9288 30 1 0.8051 -1.1551 -4.0392 31 1 6.4970 1.6424 -5.7817 32 1 5.3333 2.6126 -4.8479 33 1 6.2250 1.2901 -4.0581 34 1 4.5134 1.9523 -3.0455 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159736597.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:27 Heat of formation + Delta-G solvation = -23.763410 kcal Electronic energy + Delta-G solvation = -20189.508124 eV Core-core repulsion = 16922.134769 eV Total energy + Delta-G solvation = -3267.373355 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.23105 -38.71767 -36.95594 -36.05641 -35.15142 -32.45417 -30.64057 -30.11850 -29.45831 -27.33712 -25.31719 -23.14432 -22.20107 -22.03459 -19.77897 -17.81991 -16.71983 -16.68275 -16.08419 -15.72887 -15.42008 -15.08896 -14.50372 -13.98229 -13.86789 -13.49180 -13.24307 -13.11731 -12.98736 -12.04688 -11.97677 -11.71279 -11.39045 -11.30555 -11.26060 -11.22384 -11.11116 -10.90033 -10.61512 -10.54974 -10.39845 -10.12686 -8.89804 -8.65170 -8.45009 -7.96090 -7.37087 -6.44946 -4.13204 1.10470 1.49668 2.29118 3.12050 3.23700 3.26192 3.27827 3.50149 4.05890 4.35301 4.68580 4.75042 4.92384 5.11895 5.25459 5.31986 5.37522 5.46081 5.57594 5.61259 5.64418 5.88167 6.01154 6.14397 6.17197 6.36334 6.43800 6.66551 6.70391 6.76070 6.95271 7.33932 7.50174 8.34879 8.49724 9.15279 9.22777 9.98042 10.52789 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.027446 B = 0.004879 C = 0.004325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.922266 B = 5737.142964 C = 6472.840724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.085 3.915 3 N -0.430 5.430 4 C -0.348 4.348 5 H 0.084 0.916 6 C 0.073 3.927 7 N -0.816 5.816 8 Si 0.891 3.109 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.265 1.265 12 C 0.500 3.500 13 O -0.558 6.558 14 C -0.058 4.058 15 C -0.144 4.144 16 C -0.085 4.085 17 C -0.066 4.066 18 Cl -0.070 7.070 19 C 0.126 3.874 20 O -0.309 6.309 21 C 0.024 3.976 22 C -0.154 4.154 23 H 0.049 0.951 24 H 0.054 0.946 25 H 0.076 0.924 26 H 0.063 0.937 27 H 0.075 0.925 28 H 0.269 0.731 29 H 0.162 0.838 30 H 0.139 0.861 31 H 0.100 0.900 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.028 -5.918 -11.054 12.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.038 4.038 3 N -0.150 5.150 4 C -0.474 4.474 5 H 0.102 0.898 6 C -0.140 4.140 7 N -0.446 5.446 8 Si 0.716 3.284 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.189 1.189 12 C 0.289 3.711 13 O -0.440 6.440 14 C -0.062 4.062 15 C -0.163 4.163 16 C -0.103 4.103 17 C -0.094 4.094 18 Cl -0.041 7.041 19 C 0.080 3.920 20 O -0.222 6.222 21 C -0.071 4.071 22 C -0.174 4.174 23 H 0.068 0.932 24 H 0.073 0.927 25 H 0.095 0.905 26 H 0.081 0.919 27 H 0.093 0.907 28 H 0.079 0.921 29 H 0.179 0.821 30 H 0.157 0.843 31 H 0.118 0.882 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -1.529 -5.629 -11.170 12.601 hybrid contribution -0.185 0.032 0.931 0.950 sum -1.714 -5.597 -10.239 11.794 Atomic orbital electron populations 1.22284 0.96938 1.03519 0.99938 1.21984 0.93566 0.86321 1.01947 1.43238 1.47960 1.10442 1.13328 1.18881 1.36633 1.07483 0.84406 0.89837 1.25540 0.93072 0.95480 0.99928 1.70316 1.12198 1.35678 1.26446 0.86540 0.80952 0.79429 0.81486 1.19919 1.21114 1.18929 1.18565 0.80848 0.87402 0.84326 1.90629 1.44225 1.24618 1.84531 1.20556 0.93972 0.95929 0.95760 1.22187 1.00484 0.96494 0.97102 1.20820 0.96834 1.00092 0.92598 1.20233 0.97384 1.00543 0.91199 1.98332 1.98477 1.74103 1.33215 1.18523 0.88558 0.95369 0.89534 1.86101 1.31472 1.61792 1.42869 1.23114 0.88987 0.92629 1.02334 1.21307 1.01477 1.01799 0.92815 0.93246 0.92721 0.90458 0.91889 0.90703 0.92132 0.82131 0.84340 0.88203 0.92223 0.92258 0.83826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.75 9.69 37.16 0.36 -2.39 16 2 C 0.09 1.70 5.42 -4.05 -0.02 1.68 16 3 N -0.43 -10.51 2.53 -115.95 -0.29 -10.80 16 4 C -0.35 -9.31 7.55 -15.00 -0.11 -9.43 16 5 H 0.08 2.32 8.05 -52.49 -0.42 1.90 16 6 C 0.07 1.90 4.88 -17.46 -0.09 1.81 16 7 N -0.82 -22.44 13.86 55.50 0.77 -21.67 16 8 Si 0.89 19.47 29.69 -169.99 -5.05 14.42 16 9 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16 10 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 12 C 0.50 12.44 7.36 -12.40 -0.09 12.35 16 13 O -0.56 -16.06 16.63 5.28 0.09 -15.97 16 14 C -0.06 -1.17 5.42 -104.99 -0.57 -1.73 16 15 C -0.14 -2.38 7.43 -39.16 -0.29 -2.67 16 16 C -0.08 -1.21 9.80 -39.63 -0.39 -1.60 16 17 C -0.07 -1.01 6.34 -39.24 -0.25 -1.26 16 18 Cl -0.07 -0.95 28.49 -51.86 -1.48 -2.43 16 19 C 0.13 2.06 6.67 -39.25 -0.26 1.80 16 20 O -0.31 -4.58 9.94 -19.54 -0.19 -4.78 16 21 C 0.02 0.28 9.81 101.05 0.99 1.27 16 22 C -0.15 -2.82 8.58 -39.01 -0.33 -3.15 16 23 H 0.05 0.66 6.17 -51.93 -0.32 0.34 16 24 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.08 1.40 7.28 -51.93 -0.38 1.02 16 26 H 0.06 1.35 7.84 -51.93 -0.41 0.95 16 27 H 0.08 1.34 4.45 -51.93 -0.23 1.11 16 28 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 29 H 0.16 2.49 2.84 -52.48 -0.15 2.34 16 30 H 0.14 1.55 8.06 -52.49 -0.42 1.13 16 31 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.68 7.65 -51.93 -0.40 0.28 16 33 H 0.06 0.68 7.67 -51.93 -0.40 0.28 16 34 H 0.14 2.63 6.09 -52.49 -0.32 2.31 16 LS Contribution 302.10 15.07 4.55 4.55 Total: -1.00 -31.51 302.10 -6.08 -37.60 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -3.43 Total: 2.39 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: -1.05 Total: -3.32 kcal Atomic # 7 Polarization: -32.95 SS G_CDS: 0.48 Total: -32.47 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: -0.11 Total: -20.75 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.05 Total: 14.42 kcal Atomic # 17 Polarization: -0.95 SS G_CDS: -1.48 Total: -2.43 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.51 -6.08 -37.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159736597.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.834 kcal (2) G-P(sol) polarization free energy of solvation -31.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds