Wall clock time and date at job start Tue Mar 31 2020 05:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46493 * 109.47373 * 2 1 4 4 C 1.36879 * 120.00307 * 67.39083 * 3 2 1 5 5 H 1.08000 * 120.00168 * 238.78126 * 4 3 2 6 6 C 1.39040 * 119.99922 * 58.77648 * 4 3 2 7 7 N 1.31360 * 120.00175 * 39.49021 * 6 4 3 8 8 Si 1.86803 * 119.99935 * 219.49227 * 6 4 3 9 9 H 1.48501 * 109.46938 * 90.00170 * 8 6 4 10 10 H 1.48504 * 109.47153 * 209.99630 * 8 6 4 11 11 H 1.48499 * 109.47432 * 329.99915 * 8 6 4 12 12 C 1.34780 * 120.00175 * 247.39653 * 3 2 1 13 13 O 1.21602 * 120.00200 * 191.59710 * 12 3 2 14 14 C 1.47676 * 119.99942 * 11.59337 * 12 3 2 15 15 C 1.39695 * 120.11602 * 26.08786 * 14 12 3 16 16 C 1.37903 * 119.97017 * 180.02562 * 15 14 12 17 17 C 1.38427 * 120.20000 * 0.02562 * 16 15 14 18 18 Cl 1.73601 * 119.88753 * 180.02562 * 17 16 15 19 19 C 1.38970 * 120.22954 * 0.02562 * 17 16 15 20 20 O 1.35936 * 119.98725 * 179.97438 * 19 17 16 21 21 C 1.42895 * 116.99859 * 179.97438 * 20 19 17 22 22 C 1.38393 * 120.02564 * 359.67467 * 19 17 16 23 23 H 1.09003 * 109.46858 * 102.56747 * 1 2 3 24 24 H 1.08995 * 109.47008 * 222.56508 * 1 2 3 25 25 H 1.08998 * 109.46882 * 342.57090 * 1 2 3 26 26 H 1.09002 * 109.47029 * 119.99952 * 2 1 3 27 27 H 1.09002 * 109.47382 * 239.99790 * 2 1 3 28 28 H 0.97005 * 120.00427 * 180.02562 * 7 6 4 29 29 H 1.08005 * 120.01335 * 0.02626 * 15 14 12 30 30 H 1.07997 * 119.89624 * 180.02562 * 16 15 14 31 31 H 1.09002 * 109.47060 * 180.02562 * 21 20 19 32 32 H 1.09001 * 109.47421 * 300.00181 * 21 20 19 33 33 H 1.08999 * 109.47452 * 60.00244 * 21 20 19 34 34 H 1.07996 * 120.09708 * 180.29534 * 22 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 1.8169 2.1783 1.0943 5 1 1.2691 3.1038 0.9947 6 6 2.3174 1.7967 2.3340 7 7 3.5027 1.2369 2.4198 8 14 1.3044 2.0800 3.8777 9 1 0.4507 0.8923 4.1344 10 1 2.2122 2.2959 5.0329 11 1 0.4449 3.2768 3.6932 12 6 2.6660 1.8670 -1.0776 13 8 3.2533 2.9293 -1.0061 14 6 2.6624 1.1090 -2.3450 15 6 1.6154 0.2303 -2.6332 16 6 1.6153 -0.4764 -3.8174 17 6 2.6506 -0.3183 -4.7226 18 17 2.6420 -1.2114 -6.2113 19 6 3.6969 0.5529 -4.4439 20 8 4.7112 0.7039 -5.3361 21 6 5.7535 1.6163 -4.9851 22 6 3.7033 1.2714 -3.2611 23 1 -0.3633 -0.2236 -1.0031 24 1 -0.3633 -0.7569 0.6951 25 1 -0.3633 0.9805 0.3078 26 1 1.8933 -0.5138 0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 3.8518 0.9703 3.2847 29 1 0.8064 0.1044 -1.9288 30 1 0.8051 -1.1551 -4.0392 31 1 6.4970 1.6424 -5.7817 32 1 5.3333 2.6126 -4.8479 33 1 6.2250 1.2901 -4.0581 34 1 4.5134 1.9523 -3.0455 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159736597.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:27 Heat of formation + Delta-G solvation = -43.644096 kcal Electronic energy + Delta-G solvation = -20190.370216 eV Core-core repulsion = 16922.134769 eV Total energy + Delta-G solvation = -3268.235446 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.62123 -40.27295 -38.27350 -37.30853 -37.01440 -34.34438 -32.03802 -31.61358 -30.90499 -28.49072 -27.12327 -24.66361 -23.72498 -23.32510 -21.40378 -19.31282 -18.52383 -18.06484 -17.44284 -17.05741 -16.89318 -16.80083 -16.14377 -15.58778 -15.19958 -15.00218 -14.79705 -14.55159 -14.21181 -13.75934 -13.46854 -13.20811 -12.92789 -12.74482 -12.61239 -12.50320 -12.46664 -12.31175 -12.18251 -12.09644 -11.75988 -11.60349 -10.84761 -10.41251 -9.98036 -9.33412 -9.23621 -8.41480 -6.19910 -0.28314 0.21668 1.08745 1.38015 1.43247 1.55403 1.96269 2.15975 2.28192 2.61909 2.85230 2.99204 3.66632 3.80526 3.98712 4.06305 4.24412 4.30526 4.30787 4.36344 4.55396 4.62032 4.67210 4.72857 4.83755 4.99913 5.12190 5.23444 5.31345 5.47645 5.48876 5.57829 6.12888 6.27026 6.61875 7.17772 7.33117 8.05284 8.56231 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.027446 B = 0.004879 C = 0.004325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.922266 B = 5737.142964 C = 6472.840724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.084 3.916 3 N -0.439 5.439 4 C -0.374 4.374 5 H 0.061 0.939 6 C 0.034 3.966 7 N -0.860 5.860 8 Si 0.966 3.034 9 H -0.253 1.253 10 H -0.284 1.284 11 H -0.265 1.265 12 C 0.485 3.515 13 O -0.618 6.618 14 C -0.086 4.086 15 C -0.138 4.138 16 C -0.066 4.066 17 C -0.064 4.064 18 Cl -0.047 7.047 19 C 0.127 3.873 20 O -0.312 6.312 21 C 0.018 3.982 22 C -0.165 4.165 23 H 0.086 0.914 24 H 0.076 0.924 25 H 0.055 0.945 26 H 0.041 0.959 27 H 0.096 0.904 28 H 0.274 0.726 29 H 0.173 0.827 30 H 0.182 0.818 31 H 0.135 0.865 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.734 -8.125 -12.309 15.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.038 4.038 3 N -0.157 5.157 4 C -0.501 4.501 5 H 0.078 0.922 6 C -0.176 4.176 7 N -0.492 5.492 8 Si 0.787 3.213 9 H -0.177 1.177 10 H -0.210 1.210 11 H -0.189 1.189 12 C 0.276 3.724 13 O -0.504 6.504 14 C -0.090 4.090 15 C -0.156 4.156 16 C -0.084 4.084 17 C -0.092 4.092 18 Cl -0.018 7.018 19 C 0.080 3.920 20 O -0.226 6.226 21 C -0.076 4.076 22 C -0.185 4.185 23 H 0.104 0.896 24 H 0.095 0.905 25 H 0.075 0.925 26 H 0.060 0.940 27 H 0.113 0.887 28 H 0.084 0.916 29 H 0.190 0.810 30 H 0.199 0.801 31 H 0.153 0.847 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -3.260 -7.874 -12.432 15.072 hybrid contribution 0.435 0.700 1.131 1.400 sum -2.824 -7.173 -11.300 13.679 Atomic orbital electron populations 1.22206 0.93709 1.03109 1.02823 1.22171 0.96199 0.83538 1.01907 1.43548 1.47703 1.11800 1.12681 1.18892 1.37248 1.07975 0.85974 0.92178 1.26412 0.93507 0.94919 1.02767 1.70365 1.13705 1.37546 1.27592 0.85420 0.79087 0.79927 0.76819 1.17737 1.21030 1.18869 1.19363 0.79773 0.87066 0.86208 1.90561 1.46685 1.27251 1.85944 1.20206 0.96597 0.97892 0.94274 1.22235 0.99431 0.95637 0.98270 1.21202 0.97190 0.99179 0.90798 1.20494 0.96869 0.99743 0.92088 1.98347 1.98384 1.73310 1.31757 1.18565 0.89392 0.95122 0.88887 1.86101 1.31611 1.62376 1.42469 1.23366 0.88776 0.91852 1.03623 1.21218 1.01120 1.02465 0.93731 0.89596 0.90502 0.92541 0.94041 0.88653 0.91612 0.81050 0.80052 0.84744 0.92552 0.92672 0.85192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.90 9.69 71.98 0.70 -4.20 16 2 C 0.08 3.32 5.42 86.38 0.47 3.79 16 3 N -0.44 -22.21 2.53 -639.00 -1.62 -23.82 16 4 C -0.37 -20.90 7.55 84.10 0.63 -20.27 16 5 H 0.06 3.55 8.05 -2.91 -0.02 3.53 16 6 C 0.03 1.79 4.88 84.96 0.41 2.20 16 7 N -0.86 -48.83 13.86 21.68 0.30 -48.53 16 8 Si 0.97 40.60 29.69 68.60 2.04 42.64 16 9 H -0.25 -9.76 7.11 99.48 0.71 -9.06 16 10 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 11 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 12 C 0.49 25.35 7.36 86.74 0.64 25.99 16 13 O -0.62 -38.08 16.63 -4.04 -0.07 -38.15 16 14 C -0.09 -3.49 5.42 -20.10 -0.11 -3.60 16 15 C -0.14 -4.25 7.43 22.54 0.17 -4.08 16 16 C -0.07 -1.62 9.80 22.24 0.22 -1.40 16 17 C -0.06 -1.77 6.34 22.49 0.14 -1.63 16 18 Cl -0.05 -1.10 28.49 -2.72 -0.08 -1.18 16 19 C 0.13 4.00 6.67 22.48 0.15 4.15 16 20 O -0.31 -8.80 9.94 -92.82 -0.92 -9.73 16 21 C 0.02 0.41 9.81 113.37 1.11 1.52 16 22 C -0.17 -6.17 8.58 22.64 0.19 -5.98 16 23 H 0.09 1.96 6.17 -2.39 -0.01 1.95 16 24 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 25 H 0.06 1.98 7.28 -2.39 -0.02 1.97 16 26 H 0.04 1.79 7.84 -2.39 -0.02 1.77 16 27 H 0.10 3.31 4.45 -2.39 -0.01 3.30 16 28 H 0.27 14.32 8.31 -92.70 -0.77 13.54 16 29 H 0.17 4.84 2.84 -2.91 -0.01 4.83 16 30 H 0.18 2.97 8.06 -2.91 -0.02 2.95 16 31 H 0.13 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.06 1.30 7.65 -2.39 -0.02 1.28 16 33 H 0.05 1.28 7.67 -2.39 -0.02 1.26 16 34 H 0.13 5.09 6.09 -2.91 -0.02 5.07 16 Total: -1.00 -72.83 302.10 5.52 -67.31 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: 1.14 Total: 14.98 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: 4.73 Total: -3.51 kcal Atomic # 7 Polarization: -71.04 SS G_CDS: -1.32 Total: -72.36 kcal Atomic # 8 Polarization: -46.89 SS G_CDS: -0.99 Total: -47.88 kcal Atomic # 14 Polarization: 40.60 SS G_CDS: 2.04 Total: 42.64 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -0.08 Total: -1.18 kcal Total: -72.83 5.52 -67.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159736597.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.665 kcal (2) G-P(sol) polarization free energy of solvation -72.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds