Wall clock time and date at job start Tue Mar 31 2020 05:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 O 1.21295 * 120.00144 * 2 1 4 4 C 1.46792 * 120.00050 * 179.97438 * 2 1 3 5 5 C 1.40017 * 120.21551 * 0.27892 * 4 2 1 6 6 C 1.37778 * 119.86656 * 180.25350 * 5 4 2 7 7 Cl 1.73608 * 119.84472 * 179.74593 * 6 5 4 8 8 C 1.38728 * 120.31321 * 359.72109 * 6 5 4 9 9 C 1.38048 * 120.43998 * 0.02562 * 8 6 5 10 10 C 1.50697 * 119.93554 * 179.97438 * 9 8 6 11 11 N 1.46499 * 109.47556 * 259.97988 * 10 9 8 12 12 C 1.46501 * 120.00146 * 270.00580 * 11 10 9 13 13 C 1.36934 * 120.00013 * 89.99841 * 11 10 9 14 14 H 1.08006 * 119.99869 * 22.05103 * 13 11 10 15 15 C 1.38814 * 120.00435 * 202.05638 * 13 11 10 16 16 N 1.31621 * 119.99495 * 11.26052 * 15 13 11 17 17 Si 1.86799 * 120.00144 * 191.26627 * 15 13 11 18 18 H 1.48507 * 109.47128 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.46968 * 119.99268 * 17 15 13 20 20 H 1.48498 * 109.47281 * 239.99814 * 17 15 13 21 21 C 1.38686 * 120.12604 * 359.97438 * 9 8 6 22 22 O 1.35611 * 120.15629 * 179.97438 * 21 9 8 23 23 H 1.09003 * 109.47483 * 240.00280 * 1 2 3 24 24 H 1.09002 * 109.47418 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47082 * 120.00570 * 1 2 3 26 26 H 1.08011 * 120.07097 * 359.97438 * 5 4 2 27 27 H 1.07990 * 119.78104 * 180.02562 * 8 6 5 28 28 H 1.08997 * 109.47002 * 19.98335 * 10 9 8 29 29 H 1.09008 * 109.47013 * 139.97983 * 10 9 8 30 30 H 1.09002 * 109.47032 * 94.65151 * 12 11 10 31 31 H 1.08995 * 109.47038 * 214.65010 * 12 11 10 32 32 H 1.09000 * 109.47146 * 334.64957 * 12 11 10 33 33 H 0.96999 * 119.99302 * 180.02562 * 16 15 13 34 34 H 0.96705 * 114.00415 * 89.99600 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 6 2.2409 -1.2712 0.0006 5 6 1.5454 -2.4865 -0.0048 6 6 2.2415 -3.6754 0.0011 7 17 1.3786 -5.1818 0.0011 8 6 3.6288 -3.6746 0.0064 9 6 4.3275 -2.4839 0.0065 10 6 5.8344 -2.4963 0.0129 11 7 6.3190 -2.2566 1.3745 12 6 6.5724 -0.8880 1.8316 13 6 6.5350 -3.3119 2.2200 14 1 6.6994 -4.3009 1.8182 15 6 6.5426 -3.1106 3.5934 16 7 6.1271 -1.9660 4.0931 17 14 7.1427 -4.4641 4.7325 18 1 7.5519 -5.6432 3.9276 19 1 8.3039 -3.9724 5.5167 20 1 6.0488 -4.8530 5.6584 21 6 3.6452 -1.2765 0.0006 22 8 4.3309 -0.1065 0.0012 23 1 -0.3634 -0.5138 0.8900 24 1 -0.3634 1.0277 -0.0005 25 1 -0.3633 -0.5139 -0.8899 26 1 0.4653 -2.4919 -0.0089 27 1 4.1657 -4.6115 0.0106 28 1 6.1912 -3.4658 -0.3344 29 1 6.2069 -1.7138 -0.6483 30 1 5.6921 -0.5098 2.3514 31 1 7.4250 -0.8837 2.5105 32 1 6.7884 -0.2523 0.9729 33 1 6.1328 -1.8253 5.0528 34 1 4.5340 0.2309 -0.8821 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177088095.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:17 Heat of formation + Delta-G solvation = -36.716068 kcal Electronic energy + Delta-G solvation = -20301.142225 eV Core-core repulsion = 17033.207201 eV Total energy + Delta-G solvation = -3267.935024 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.13969 -38.26100 -36.85166 -35.78213 -35.39377 -32.42531 -31.05398 -29.52837 -29.02996 -26.05099 -25.69092 -23.59246 -22.03923 -20.82730 -19.23711 -18.00252 -16.82156 -16.46939 -16.02017 -15.32305 -14.86197 -14.79443 -14.51086 -14.16331 -13.60189 -13.40811 -13.18319 -12.86621 -12.48181 -12.26654 -12.11906 -12.08572 -11.49559 -11.19136 -11.00111 -10.88192 -10.82196 -10.64772 -10.43970 -10.23040 -9.99832 -9.95657 -9.36457 -8.63250 -8.60300 -8.14875 -6.83805 -5.78347 -3.21645 0.84325 1.42575 2.31311 2.60683 3.34561 3.41251 3.43318 3.81960 4.19767 4.45442 4.49500 4.97179 5.10947 5.23031 5.36849 5.39164 5.54206 5.54629 5.66083 5.69378 5.92839 6.04820 6.14733 6.23765 6.42753 6.55219 6.82173 6.90886 6.93585 7.43960 7.71488 7.73493 7.90718 8.06542 8.32333 9.16377 9.78214 10.27250 11.24256 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.014577 B = 0.006678 C = 0.005308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.379315 B = 4192.154174 C = 5273.626637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.395 3.605 3 O -0.445 6.445 4 C -0.199 4.199 5 C -0.076 4.076 6 C -0.054 4.054 7 Cl -0.081 7.081 8 C -0.058 4.058 9 C -0.110 4.110 10 C 0.187 3.813 11 N -0.582 5.582 12 C 0.170 3.830 13 C -0.257 4.257 14 H 0.072 0.928 15 C 0.004 3.996 16 N -0.895 5.895 17 Si 0.906 3.094 18 H -0.276 1.276 19 H -0.288 1.288 20 H -0.289 1.289 21 C 0.185 3.815 22 O -0.464 6.464 23 H 0.091 0.909 24 H 0.082 0.918 25 H 0.090 0.910 26 H 0.135 0.865 27 H 0.135 0.865 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.033 0.967 31 H 0.041 0.959 32 H 0.002 0.998 33 H 0.254 0.746 34 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.724 -0.680 -11.386 14.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.273 3.727 3 O -0.320 6.320 4 C -0.201 4.201 5 C -0.096 4.096 6 C -0.080 4.080 7 Cl -0.053 7.053 8 C -0.078 4.078 9 C -0.116 4.116 10 C 0.059 3.941 11 N -0.301 5.301 12 C 0.026 3.974 13 C -0.386 4.386 14 H 0.089 0.911 15 C -0.195 4.195 16 N -0.538 5.538 17 Si 0.735 3.265 18 H -0.201 1.201 19 H -0.215 1.215 20 H -0.216 1.216 21 C 0.138 3.862 22 O -0.273 6.273 23 H 0.110 0.890 24 H 0.100 0.900 25 H 0.108 0.892 26 H 0.153 0.847 27 H 0.153 0.847 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.021 0.979 33 H 0.064 0.936 34 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -9.419 -0.208 -10.549 14.144 hybrid contribution -0.118 -0.976 0.552 1.127 sum -9.537 -1.184 -9.997 13.867 Atomic orbital electron populations 1.22242 0.94274 1.04734 1.04312 1.22163 0.91239 0.87484 0.71858 1.90566 1.71976 1.33829 1.35606 1.20718 0.93955 0.94668 1.10780 1.20899 0.99672 0.89595 0.99437 1.20732 0.92546 0.86483 1.08276 1.98340 1.77049 1.32643 1.97236 1.21000 0.91182 0.98996 0.96643 1.21658 1.00996 0.90902 0.98028 1.19917 0.85374 0.99720 0.89089 1.44257 1.71737 1.04252 1.09833 1.20796 0.99924 0.82484 0.94211 1.19320 1.42315 0.89779 0.87207 0.91057 1.25130 0.99950 0.97214 0.97247 1.70122 1.48472 1.23681 1.11567 0.86169 0.78131 0.81277 0.80901 1.20140 1.21457 1.21624 1.18551 0.87998 0.85997 0.93641 1.84882 1.75013 1.35509 1.31911 0.89031 0.89952 0.89153 0.84738 0.84747 0.92502 0.92964 0.94865 0.93990 0.97920 0.93595 0.75972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.01 8.93 36.00 0.32 -1.69 16 2 C 0.39 5.93 7.21 -30.86 -0.22 5.71 16 3 O -0.44 -8.08 15.89 -16.37 -0.26 -8.34 16 4 C -0.20 -3.22 5.88 -104.95 -0.62 -3.84 16 5 C -0.08 -1.09 9.24 -39.08 -0.36 -1.45 16 6 C -0.05 -0.83 6.31 -39.57 -0.25 -1.08 16 7 Cl -0.08 -1.11 28.94 -51.86 -1.50 -2.61 16 8 C -0.06 -1.00 9.43 -39.47 -0.37 -1.37 16 9 C -0.11 -2.06 5.47 -104.53 -0.57 -2.63 16 10 C 0.19 3.68 5.50 -5.20 -0.03 3.65 16 11 N -0.58 -14.40 2.91 -182.50 -0.53 -14.93 16 12 C 0.17 4.29 7.95 59.85 0.48 4.77 16 13 C -0.26 -6.91 9.68 -15.06 -0.15 -7.05 16 14 H 0.07 1.85 7.84 -52.48 -0.41 1.44 16 15 C 0.00 0.12 5.14 -17.43 -0.09 0.03 16 16 N -0.90 -26.36 10.56 55.49 0.59 -25.77 16 17 Si 0.91 21.76 29.57 -169.99 -5.03 16.73 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 C 0.19 3.38 6.70 -38.59 -0.26 3.12 16 22 O -0.46 -8.45 9.55 -40.45 -0.39 -8.84 16 23 H 0.09 0.84 8.09 -51.93 -0.42 0.42 16 24 H 0.08 0.79 8.12 -51.93 -0.42 0.37 16 25 H 0.09 0.70 8.08 -51.93 -0.42 0.28 16 26 H 0.13 1.50 7.05 -52.48 -0.37 1.13 16 27 H 0.13 2.21 8.02 -52.49 -0.42 1.79 16 28 H 0.06 1.05 7.88 -51.93 -0.41 0.64 16 29 H 0.05 0.92 7.57 -51.92 -0.39 0.53 16 30 H 0.03 0.94 7.40 -51.93 -0.38 0.56 16 31 H 0.04 1.13 7.19 -51.93 -0.37 0.76 16 32 H 0.00 0.05 7.66 -51.93 -0.40 -0.35 16 33 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 34 H 0.38 5.10 9.06 45.56 0.41 5.52 16 LS Contribution 308.46 15.07 4.65 4.65 Total: -1.00 -32.44 308.46 -7.73 -40.18 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: -3.14 Total: 0.78 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: -2.12 Total: -1.84 kcal Atomic # 7 Polarization: -40.76 SS G_CDS: 0.06 Total: -40.70 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: -0.65 Total: -17.18 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.73 kcal Atomic # 17 Polarization: -1.11 SS G_CDS: -1.50 Total: -2.61 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.44 -7.73 -40.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177088095.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.461 kcal (2) G-P(sol) polarization free energy of solvation -32.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds