Wall clock time and date at job start Tue Mar 31 2020 05:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.46957 * 2 1 4 4 C 1.52995 * 109.47310 * 120.00151 * 2 1 3 5 5 N 1.46495 * 109.47539 * 184.99658 * 4 2 1 6 6 C 1.34777 * 120.00539 * 179.97438 * 5 4 2 7 7 O 1.21694 * 119.99567 * 0.02562 * 6 5 4 8 8 C 1.46368 * 120.00335 * 180.02562 * 6 5 4 9 9 H 1.08007 * 119.99865 * 6.07146 * 8 6 5 10 10 C 1.40050 * 120.00424 * 186.07089 * 8 6 5 11 11 N 1.30673 * 119.99510 * 353.83568 * 10 8 6 12 12 Si 1.86801 * 120.00320 * 173.82905 * 10 8 6 13 13 H 1.48503 * 109.46798 * 94.98624 * 12 10 8 14 14 H 1.48493 * 109.47242 * 214.98449 * 12 10 8 15 15 H 1.48502 * 109.47058 * 334.98787 * 12 10 8 16 16 O 1.42905 * 109.46872 * 239.99943 * 2 1 3 17 17 C 1.35902 * 116.99847 * 84.84909 * 16 2 1 18 18 C 1.38759 * 120.05045 * 174.79022 * 17 16 2 19 19 C 1.38130 * 119.97250 * 179.72264 * 18 17 16 20 20 C 1.38269 * 120.06437 * 0.26001 * 19 18 17 21 21 C 1.38364 * 120.10030 * 0.04231 * 20 19 18 22 22 Cl 1.73604 * 119.98429 * 179.97438 * 21 20 19 23 23 C 1.38279 * 120.02867 * 359.95706 * 21 20 19 24 24 H 1.09000 * 109.47071 * 299.99585 * 1 2 3 25 25 H 1.09003 * 109.47317 * 60.00035 * 1 2 3 26 26 H 1.09004 * 109.47385 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47294 * 305.00275 * 4 2 1 28 28 H 1.09008 * 109.47082 * 64.99934 * 4 2 1 29 29 H 0.97006 * 119.99815 * 0.02562 * 5 4 2 30 30 H 0.97005 * 119.99900 * 179.97438 * 11 10 8 31 31 H 1.08006 * 120.01078 * 0.02562 * 18 17 16 32 32 H 1.08000 * 119.96515 * 180.28163 * 19 18 17 33 33 H 1.08007 * 119.94647 * 180.02562 * 20 19 18 34 34 H 1.08005 * 120.03002 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5000 -0.6180 1.3109 6 6 4.1730 -1.1827 2.3329 7 8 3.5678 -1.7789 3.2043 8 6 5.6317 -1.0790 2.3948 9 1 6.1606 -0.4688 1.6777 10 6 6.3417 -1.7711 3.3840 11 7 5.6974 -2.4113 4.3235 12 14 8.2095 -1.7792 3.3602 13 1 8.7204 -0.7027 4.2464 14 1 8.7050 -3.0936 3.8419 15 1 8.6879 -1.5477 1.9736 16 8 2.0063 -0.6737 -1.1668 17 6 2.1094 0.0618 -2.3050 18 6 2.6657 -0.4982 -3.4462 19 6 2.7645 0.2489 -4.6037 20 6 2.3145 1.5562 -4.6249 21 6 1.7650 2.1194 -3.4869 22 17 1.2015 3.7612 -3.5167 23 6 1.6641 1.3751 -2.3259 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.6054 -0.2618 2.1369 28 1 1.7516 -1.7716 1.2055 29 1 3.9824 -0.1424 0.6165 30 1 6.1890 -2.8910 5.0084 31 1 3.0168 -1.5195 -3.4307 32 1 3.1933 -0.1885 -5.4932 33 1 2.3923 2.1385 -5.5312 34 1 1.2348 1.8147 -1.4376 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187339296.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:11 Heat of formation + Delta-G solvation = -65.488907 kcal Electronic energy + Delta-G solvation = -19321.666169 eV Core-core repulsion = 16052.483461 eV Total energy + Delta-G solvation = -3269.182708 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.42814 -38.15310 -37.08533 -36.47535 -33.84393 -32.43535 -31.42553 -30.80239 -29.78705 -26.97927 -24.98314 -23.49094 -22.60793 -20.90005 -19.70009 -18.57393 -17.32153 -16.34623 -16.03805 -15.53231 -15.32284 -15.03471 -14.66777 -13.99973 -13.96335 -13.78252 -13.30676 -13.15583 -12.82033 -12.38784 -12.16133 -12.02139 -11.81320 -11.50329 -11.39463 -11.16759 -11.14223 -10.96143 -10.78779 -10.58850 -10.42909 -10.20975 -9.06721 -8.84130 -8.34179 -7.62983 -7.53572 -6.19408 -4.63022 0.96453 1.17625 1.90197 3.13121 3.14459 3.21790 3.26027 3.47939 4.10576 4.57686 4.60189 4.60801 4.75043 4.87341 4.93921 5.09363 5.14425 5.30528 5.36918 5.45880 5.60703 5.70166 5.77427 5.97533 6.03717 6.08755 6.16762 6.24028 6.40346 6.50259 7.36164 7.44289 7.91000 8.05969 8.32836 9.03140 9.51268 10.59486 10.77704 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.020654 B = 0.003719 C = 0.003485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.333272 B = 7526.362752 C = 8032.687764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.070 3.930 3 H 0.077 0.923 4 C 0.139 3.861 5 N -0.766 5.766 6 C 0.555 3.445 7 O -0.582 6.582 8 C -0.545 4.545 9 H 0.067 0.933 10 C 0.088 3.912 11 N -0.768 5.768 12 Si 0.907 3.093 13 H -0.273 1.273 14 H -0.279 1.279 15 H -0.264 1.264 16 O -0.294 6.294 17 C 0.155 3.845 18 C -0.150 4.150 19 C -0.068 4.068 20 C -0.157 4.157 21 C 0.006 3.994 22 Cl -0.073 7.073 23 C -0.208 4.208 24 H 0.077 0.923 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.381 0.619 30 H 0.268 0.732 31 H 0.138 0.862 32 H 0.137 0.863 33 H 0.132 0.868 34 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.026 8.289 -17.163 20.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.014 3.986 3 H 0.095 0.905 4 C 0.014 3.986 5 N -0.422 5.422 6 C 0.360 3.640 7 O -0.465 6.465 8 C -0.582 4.582 9 H 0.086 0.914 10 C -0.132 4.132 11 N -0.397 5.397 12 Si 0.731 3.269 13 H -0.198 1.198 14 H -0.204 1.204 15 H -0.188 1.188 16 O -0.207 6.207 17 C 0.108 3.892 18 C -0.168 4.168 19 C -0.086 4.086 20 C -0.176 4.176 21 C -0.021 4.021 22 Cl -0.044 7.044 23 C -0.227 4.227 24 H 0.095 0.905 25 H 0.081 0.919 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.079 0.921 29 H 0.212 0.788 30 H 0.079 0.921 31 H 0.156 0.844 32 H 0.155 0.845 33 H 0.149 0.851 34 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -8.496 7.661 -16.280 19.897 hybrid contribution 0.970 0.623 -0.294 1.189 sum -7.527 8.284 -16.573 19.999 Atomic orbital electron populations 1.22316 0.94434 1.03812 1.02912 1.22923 0.94513 0.97113 0.84028 0.90494 1.20991 0.84942 1.00087 0.92610 1.46090 1.04067 1.62498 1.29497 1.18214 0.88251 0.78046 0.79536 1.90599 1.70083 1.46120 1.39710 1.20867 0.90096 1.31601 1.15650 0.91440 1.25699 0.99892 0.93594 0.93965 1.70029 1.36470 1.23685 1.09487 0.86372 0.83182 0.78078 0.79223 1.19833 1.20378 1.18830 1.86287 1.80316 1.37824 1.16237 1.18951 0.93400 0.89366 0.87512 1.20634 1.03217 1.01890 0.91091 1.20906 0.97220 0.92969 0.97545 1.20916 1.02896 0.96228 0.97579 1.20636 1.00174 0.86054 0.95228 1.98371 1.87876 1.19391 1.98763 1.21202 1.08055 0.94461 0.98977 0.90451 0.91938 0.90963 0.91141 0.92087 0.78768 0.92123 0.84408 0.84492 0.85053 0.84151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.00 9.17 37.16 0.34 -1.66 16 2 C 0.07 1.00 2.26 -26.74 -0.06 0.93 16 3 H 0.08 1.02 6.29 -51.93 -0.33 0.69 16 4 C 0.14 2.61 5.34 -4.05 -0.02 2.59 16 5 N -0.77 -17.27 5.50 -61.72 -0.34 -17.61 16 6 C 0.56 15.94 7.74 -12.99 -0.10 15.84 16 7 O -0.58 -18.93 15.05 5.19 0.08 -18.85 16 8 C -0.55 -15.56 9.53 -35.63 -0.34 -15.90 16 9 H 0.07 1.77 7.86 -52.48 -0.41 1.36 16 10 C 0.09 2.48 5.49 -17.37 -0.10 2.39 16 11 N -0.77 -23.16 11.85 55.55 0.66 -22.50 16 12 Si 0.91 20.26 29.56 -169.99 -5.03 15.23 16 13 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 14 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 15 H -0.26 -5.72 7.11 56.52 0.40 -5.32 16 16 O -0.29 -4.43 9.75 -19.43 -0.19 -4.62 16 17 C 0.15 2.03 6.60 -39.22 -0.26 1.77 16 18 C -0.15 -1.73 9.99 -39.43 -0.39 -2.12 16 19 C -0.07 -0.65 10.04 -39.61 -0.40 -1.04 16 20 C -0.16 -1.54 9.83 -39.52 -0.39 -1.93 16 21 C 0.01 0.06 6.32 -39.52 -0.25 -0.19 16 22 Cl -0.07 -0.75 28.95 -51.86 -1.50 -2.25 16 23 C -0.21 -2.50 8.03 -39.40 -0.32 -2.81 16 24 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.06 0.64 6.94 -51.93 -0.36 0.28 16 26 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 28 H 0.06 1.24 8.14 -51.92 -0.42 0.82 16 29 H 0.38 7.79 8.45 -40.82 -0.35 7.44 16 30 H 0.27 7.31 8.29 -40.82 -0.34 6.97 16 31 H 0.14 1.49 8.06 -52.48 -0.42 1.07 16 32 H 0.14 0.91 8.06 -52.49 -0.42 0.48 16 33 H 0.13 1.03 8.06 -52.48 -0.42 0.60 16 34 H 0.14 1.59 5.44 -52.48 -0.29 1.30 16 LS Contribution 312.33 15.07 4.71 4.71 Total: -1.00 -34.18 312.33 -7.72 -41.90 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -3.82 Total: 6.14 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: -2.28 Total: -2.15 kcal Atomic # 7 Polarization: -40.43 SS G_CDS: 0.32 Total: -40.11 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: -0.11 Total: -23.47 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.03 Total: 15.23 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -1.50 Total: -2.25 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -34.18 -7.72 -41.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187339296.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.588 kcal (2) G-P(sol) polarization free energy of solvation -34.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds