Wall clock time and date at job start Tue Mar 31 2020 05:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46509 * 109.46847 * 2 1 4 4 C 1.46498 * 120.00020 * 72.39758 * 3 2 1 5 5 C 1.50705 * 109.47120 * 89.99937 * 4 3 2 6 6 H 1.07998 * 120.00107 * 359.97438 * 5 4 3 7 7 C 1.37873 * 119.99632 * 179.97438 * 5 4 3 8 8 N 1.31512 * 120.00486 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99596 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47093 * 90.00327 * 9 7 5 11 11 H 1.48504 * 109.47041 * 210.00124 * 9 7 5 12 12 H 1.48497 * 109.47448 * 329.99930 * 9 7 5 13 13 C 1.34779 * 119.99622 * 252.39247 * 3 2 1 14 14 O 1.21558 * 119.99500 * 181.55820 * 13 3 2 15 15 C 1.47778 * 120.00063 * 1.56615 * 13 3 2 16 16 C 1.39580 * 120.13009 * 26.75570 * 15 13 3 17 17 C 1.38398 * 119.80369 * 179.81613 * 16 15 13 18 18 O 1.35928 * 119.96441 * 180.18585 * 17 16 15 19 19 C 1.38881 * 120.06932 * 0.44101 * 17 16 15 20 20 C 1.38194 * 120.26065 * 359.78882 * 19 17 16 21 21 C 1.38166 * 120.19376 * 0.02562 * 20 19 17 22 22 Cl 1.73601 * 120.03415 * 179.97438 * 21 20 19 23 23 H 1.09003 * 109.47228 * 300.00062 * 1 2 3 24 24 H 1.09000 * 109.47220 * 60.00279 * 1 2 3 25 25 H 1.09003 * 109.46773 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47460 * 239.99974 * 2 1 3 27 27 H 1.09000 * 109.47220 * 119.99720 * 2 1 3 28 28 H 1.09003 * 109.46783 * 209.99902 * 4 3 2 29 29 H 1.08998 * 109.46927 * 330.00169 * 4 3 2 30 30 H 0.97005 * 120.00069 * 179.97438 * 8 7 5 31 31 H 1.07996 * 120.09453 * 0.02562 * 16 15 13 32 32 H 0.96696 * 114.00286 * 270.25511 * 18 17 16 33 33 H 1.08001 * 119.87177 * 179.76918 * 19 17 16 34 34 H 1.07999 * 119.90144 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 1.9007 2.1998 1.2093 5 6 3.1372 2.0291 2.0537 6 1 3.9311 1.3759 1.7228 7 6 3.2550 2.7068 3.2485 8 7 2.2881 3.5018 3.6517 9 14 4.7874 2.4946 4.2955 10 1 5.7980 3.5104 3.9054 11 1 4.4366 2.6701 5.7278 12 1 5.3459 1.1348 4.0857 13 6 2.5758 1.8989 -1.1126 14 8 3.0066 3.0356 -1.1041 15 6 2.6631 1.0847 -2.3427 16 6 1.7404 0.0632 -2.5738 17 6 1.8262 -0.6926 -3.7300 18 8 0.9270 -1.6857 -3.9601 19 6 2.8331 -0.4410 -4.6527 20 6 3.7510 0.5665 -4.4245 21 6 3.6732 1.3303 -3.2757 22 17 4.8288 2.5945 -2.9929 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.7935 3.2479 0.9296 29 1 1.0260 1.8842 1.7780 30 1 2.3708 3.9784 4.4926 31 1 0.9598 -0.1345 -1.8541 32 1 1.1931 -2.5464 -3.6088 33 1 2.8993 -1.0353 -5.5521 34 1 4.5320 0.7569 -5.1458 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233429841.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:00 Heat of formation + Delta-G solvation = -49.689345 kcal Electronic energy + Delta-G solvation = -20216.024525 eV Core-core repulsion = 16947.526937 eV Total energy + Delta-G solvation = -3268.497588 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.69843 -39.90261 -38.03776 -37.21472 -36.83933 -35.02572 -32.76808 -31.60772 -30.49539 -29.17598 -25.72848 -24.83263 -23.75886 -23.33183 -20.85037 -19.06746 -18.58792 -18.13139 -17.89619 -17.26333 -16.76992 -16.31026 -16.04563 -15.66527 -15.57230 -14.75970 -14.49734 -14.19778 -13.99418 -13.48735 -13.45876 -13.31215 -13.12534 -13.00904 -12.68036 -12.56408 -12.42957 -12.17621 -11.99450 -11.88721 -11.70824 -11.55259 -10.65815 -10.54674 -10.07064 -9.61476 -9.43585 -8.23595 -6.37814 -0.32557 -0.00311 1.16536 1.34402 1.37978 1.47213 1.80699 2.18037 2.39971 2.56827 3.05822 3.11389 3.50178 3.67822 4.01865 4.03296 4.21676 4.29436 4.34650 4.53806 4.71238 4.81857 4.86751 4.93006 5.01060 5.07950 5.14451 5.22860 5.37298 5.52384 5.55160 5.81232 6.04956 6.65242 6.72273 6.85318 7.24403 7.40009 8.83588 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.018894 B = 0.005832 C = 0.004844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.589481 B = 4799.772881 C = 5778.528584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.067 3.933 3 N -0.593 5.593 4 C 0.264 3.736 5 C -0.541 4.541 6 H 0.050 0.950 7 C 0.010 3.990 8 N -0.927 5.927 9 Si 0.965 3.035 10 H -0.282 1.282 11 H -0.272 1.272 12 H -0.262 1.262 13 C 0.530 3.470 14 O -0.566 6.566 15 C -0.123 4.123 16 C -0.137 4.137 17 C 0.116 3.884 18 O -0.494 6.494 19 C -0.100 4.100 20 C -0.095 4.095 21 C -0.023 4.023 22 Cl -0.064 7.064 23 H 0.046 0.954 24 H 0.060 0.940 25 H 0.107 0.893 26 H 0.123 0.877 27 H 0.069 0.931 28 H -0.002 1.002 29 H 0.029 0.971 30 H 0.267 0.733 31 H 0.178 0.822 32 H 0.418 0.582 33 H 0.180 0.820 34 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.065 -15.367 -16.821 22.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.055 4.055 3 N -0.323 5.323 4 C 0.143 3.857 5 C -0.580 4.580 6 H 0.068 0.932 7 C -0.189 4.189 8 N -0.567 5.567 9 Si 0.789 3.211 10 H -0.208 1.208 11 H -0.197 1.197 12 H -0.187 1.187 13 C 0.318 3.682 14 O -0.446 6.446 15 C -0.127 4.127 16 C -0.155 4.155 17 C 0.071 3.929 18 O -0.308 6.308 19 C -0.119 4.119 20 C -0.114 4.114 21 C -0.050 4.050 22 Cl -0.035 7.035 23 H 0.065 0.935 24 H 0.079 0.921 25 H 0.125 0.875 26 H 0.141 0.859 27 H 0.088 0.912 28 H 0.016 0.984 29 H 0.047 0.953 30 H 0.076 0.924 31 H 0.195 0.805 32 H 0.278 0.722 33 H 0.198 0.802 34 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -1.135 -14.131 -16.867 22.034 hybrid contribution 1.038 0.470 1.390 1.797 sum -0.097 -13.661 -15.477 20.644 Atomic orbital electron populations 1.22194 0.94132 1.04285 1.01960 1.22646 0.95858 0.82054 1.04911 1.48136 1.57993 1.14560 1.11637 1.18734 0.96219 0.89631 0.81078 1.21664 1.04025 1.27376 1.04933 0.93179 1.25811 0.99782 0.94414 0.98898 1.70043 1.34275 1.29469 1.22893 0.85459 0.78970 0.78811 0.77842 1.20799 1.19702 1.18659 1.18735 0.78624 0.86798 0.84012 1.90772 1.48444 1.20488 1.84882 1.19721 0.98589 0.99090 0.95292 1.22645 0.99706 0.94500 0.98651 1.18342 0.90149 0.92474 0.91906 1.84809 1.43893 1.21071 1.81002 1.21914 0.91779 0.97426 1.00752 1.21222 1.00965 0.94383 0.94788 1.21310 0.93068 0.93897 0.96770 1.98406 1.57763 1.51084 1.96216 0.93462 0.92141 0.87483 0.85930 0.91227 0.98405 0.95264 0.92373 0.80529 0.72184 0.80246 0.81385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.34 9.11 71.98 0.66 -3.68 16 2 C 0.07 2.11 5.63 86.38 0.49 2.60 16 3 N -0.59 -26.41 2.51 -829.63 -2.08 -28.49 16 4 C 0.26 14.64 5.08 85.63 0.43 15.07 16 5 C -0.54 -32.05 9.39 25.60 0.24 -31.81 16 6 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 7 C 0.01 0.59 5.46 84.65 0.46 1.05 16 8 N -0.93 -56.90 13.29 21.45 0.28 -56.62 16 9 Si 0.96 45.89 29.54 68.60 2.03 47.91 16 10 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 11 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 12 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 13 C 0.53 24.05 7.33 86.77 0.64 24.69 16 14 O -0.57 -30.87 14.22 -3.90 -0.06 -30.92 16 15 C -0.12 -4.16 5.57 -20.08 -0.11 -4.27 16 16 C -0.14 -3.38 7.39 22.63 0.17 -3.22 16 17 C 0.12 2.08 6.70 22.46 0.15 2.23 16 18 O -0.49 -6.21 13.50 -92.74 -1.25 -7.46 16 19 C -0.10 -1.53 9.98 22.41 0.22 -1.30 16 20 C -0.10 -1.91 9.81 22.24 0.22 -1.70 16 21 C -0.02 -0.69 6.34 22.60 0.14 -0.55 16 22 Cl -0.06 -2.30 26.40 -2.72 -0.07 -2.37 16 23 H 0.05 1.45 7.26 -2.39 -0.02 1.44 16 24 H 0.06 1.52 7.11 -2.39 -0.02 1.51 16 25 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 26 H 0.12 3.12 3.84 -3.72 -0.01 3.11 16 27 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 28 H 0.00 -0.14 7.44 -2.39 -0.02 -0.16 16 29 H 0.03 1.62 7.15 -2.39 -0.02 1.61 16 30 H 0.27 15.36 8.31 -92.70 -0.77 14.59 16 31 H 0.18 4.07 2.87 -2.91 -0.01 4.06 16 32 H 0.42 0.89 9.06 -74.06 -0.67 0.22 16 33 H 0.18 1.35 8.06 -2.91 -0.02 1.32 16 34 H 0.17 2.42 8.06 -2.91 -0.02 2.40 16 Total: -1.00 -80.23 301.80 3.03 -77.20 By element: Atomic # 1 Polarization: 1.16 SS G_CDS: 0.48 Total: 1.64 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: 3.71 Total: -0.89 kcal Atomic # 7 Polarization: -83.31 SS G_CDS: -1.80 Total: -85.11 kcal Atomic # 8 Polarization: -37.08 SS G_CDS: -1.31 Total: -38.39 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.91 kcal Atomic # 17 Polarization: -2.30 SS G_CDS: -0.07 Total: -2.37 kcal Total: -80.23 3.03 -77.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233429841.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.509 kcal (2) G-P(sol) polarization free energy of solvation -80.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds