Wall clock time and date at job start Tue Mar 31 2020 05:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47183 * 2 1 4 4 C 1.50705 * 109.46981 * 240.00428 * 2 1 3 5 5 H 1.08004 * 119.99712 * 239.99577 * 4 2 1 6 6 C 1.37869 * 120.00479 * 59.99894 * 4 2 1 7 7 N 1.31520 * 119.99538 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00316 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47043 * 90.00039 * 8 6 4 10 10 H 1.48503 * 109.47036 * 209.99813 * 8 6 4 11 11 H 1.48494 * 109.47143 * 329.99614 * 8 6 4 12 12 N 1.46501 * 109.47321 * 120.00465 * 2 1 3 13 13 C 1.46495 * 120.00097 * 60.00014 * 12 2 1 14 14 C 1.34784 * 119.99473 * 240.00036 * 12 2 1 15 15 O 1.21557 * 120.00073 * 5.12766 * 14 12 2 16 16 C 1.47781 * 119.99621 * 185.12672 * 14 12 2 17 17 C 1.39580 * 120.12767 * 22.45728 * 16 14 12 18 18 C 1.38397 * 119.80646 * 179.81046 * 17 16 14 19 19 O 1.35925 * 119.96991 * 180.20760 * 18 17 16 20 20 C 1.38882 * 120.06346 * 0.44632 * 18 17 16 21 21 C 1.38188 * 120.26623 * 359.78626 * 20 18 17 22 22 C 1.38166 * 120.19327 * 0.02562 * 21 20 18 23 23 Cl 1.73601 * 120.03790 * 179.97438 * 22 21 20 24 24 H 1.09002 * 109.46709 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46950 * 299.99676 * 1 2 3 26 26 H 1.08996 * 109.47420 * 60.00216 * 1 2 3 27 27 H 0.97003 * 119.99633 * 179.97438 * 7 6 4 28 28 H 1.08995 * 109.47206 * 84.03991 * 13 12 2 29 29 H 1.08999 * 109.47299 * 324.03017 * 13 12 2 30 30 H 1.09008 * 109.46890 * 204.03756 * 13 12 2 31 31 H 1.07997 * 120.10013 * 0.02562 * 17 16 14 32 32 H 0.96701 * 114.00344 * 270.24074 * 19 18 17 33 33 H 1.08007 * 119.86462 * 179.76342 * 20 18 17 34 34 H 1.08007 * 119.90794 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6033 8 14 2.3213 -1.1203 -4.0080 9 1 1.3427 -2.1616 -4.4120 10 1 2.4865 -0.1412 -5.1123 11 1 3.6293 -1.7582 -3.7124 12 7 2.0184 -0.6907 1.1961 13 6 1.6645 -2.0933 1.4279 14 6 2.7933 -0.0356 2.0833 15 8 3.0103 1.1519 1.9403 16 6 3.3791 -0.7611 3.2298 17 6 3.5443 -2.1459 3.1721 18 6 4.0972 -2.8181 4.2481 19 8 4.2635 -4.1661 4.1939 20 6 4.4777 -2.1174 5.3852 21 6 4.3110 -0.7470 5.4472 22 6 3.7637 -0.0645 4.3778 23 17 3.5555 1.6570 4.4603 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 0.7087 1.1614 -3.4844 28 1 2.3553 -2.7370 0.8834 29 1 0.6478 -2.2739 1.0790 30 1 1.7272 -2.3124 2.4938 31 1 3.2447 -2.6908 2.2891 32 1 3.5042 -4.6695 4.5182 33 1 4.9054 -2.6458 6.2246 34 1 4.6086 -0.2079 6.3346 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235411576.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:15 Heat of formation + Delta-G solvation = -50.315359 kcal Electronic energy + Delta-G solvation = -20189.258637 eV Core-core repulsion = 16920.733903 eV Total energy + Delta-G solvation = -3268.524734 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.59027 -39.95151 -38.04845 -37.14191 -36.89924 -34.99678 -32.87706 -30.74621 -30.60418 -27.98957 -27.31597 -25.21368 -23.74072 -22.68069 -20.78513 -19.03216 -18.44420 -18.01091 -17.79830 -17.15644 -16.75189 -16.43152 -15.90579 -15.75022 -15.17471 -14.78636 -14.43958 -14.23183 -13.95390 -13.57667 -13.49093 -13.28412 -13.01094 -12.81867 -12.71217 -12.50010 -12.20740 -12.16819 -12.09344 -11.99638 -11.60129 -11.17833 -10.61973 -10.44880 -10.10748 -9.60793 -9.32131 -8.15343 -6.32353 -0.33045 0.02745 1.17054 1.41027 1.43040 1.52747 1.81193 2.22877 2.43883 2.57686 3.11966 3.13536 3.54331 3.70025 4.06179 4.18018 4.32305 4.38292 4.61169 4.67897 4.79173 4.85848 4.87733 4.94586 5.02308 5.06584 5.20122 5.45112 5.52682 5.60034 5.64748 6.01742 6.13726 6.73354 6.75123 6.85686 7.26362 7.43109 8.89110 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.020030 B = 0.005440 C = 0.004648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.568538 B = 5145.516474 C = 6022.873774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.264 3.736 3 H 0.010 0.990 4 C -0.539 4.539 5 H 0.062 0.938 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.966 3.034 9 H -0.266 1.266 10 H -0.286 1.286 11 H -0.271 1.271 12 N -0.592 5.592 13 C 0.068 3.932 14 C 0.529 3.471 15 O -0.573 6.573 16 C -0.124 4.124 17 C -0.128 4.128 18 C 0.113 3.887 19 O -0.497 6.497 20 C -0.099 4.099 21 C -0.097 4.097 22 C -0.020 4.020 23 Cl -0.060 7.060 24 H 0.050 0.950 25 H 0.018 0.982 26 H 0.069 0.931 27 H 0.265 0.735 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.101 0.899 31 H 0.168 0.832 32 H 0.417 0.583 33 H 0.179 0.821 34 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.702 -11.513 17.700 21.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.162 3.838 3 H 0.028 0.972 4 C -0.577 4.577 5 H 0.080 0.920 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.791 3.209 9 H -0.191 1.191 10 H -0.212 1.212 11 H -0.196 1.196 12 N -0.322 5.322 13 C -0.074 4.074 14 C 0.318 3.682 15 O -0.454 6.454 16 C -0.128 4.128 17 C -0.146 4.146 18 C 0.068 3.932 19 O -0.311 6.311 20 C -0.118 4.118 21 C -0.115 4.115 22 C -0.047 4.047 23 Cl -0.031 7.031 24 H 0.069 0.931 25 H 0.037 0.963 26 H 0.087 0.913 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.119 0.881 31 H 0.185 0.815 32 H 0.277 0.723 33 H 0.196 0.804 34 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 4.208 -10.505 17.234 20.617 hybrid contribution -0.384 0.274 -1.114 1.210 sum 3.824 -10.231 16.120 19.471 Atomic orbital electron populations 1.21876 0.97070 1.00216 0.99945 1.18568 0.91742 0.92239 0.81235 0.97183 1.21553 1.32030 1.13131 0.91004 0.92027 1.25739 0.95044 0.95612 1.02025 1.70032 1.37256 1.23847 1.24460 0.85436 0.78843 0.78257 0.78357 1.19068 1.21217 1.19617 1.48105 1.48597 1.13361 1.22151 1.22477 1.01840 0.80849 1.02207 1.18768 0.79594 0.86722 0.83141 1.90760 1.62036 1.16503 1.76093 1.19689 1.04474 0.94462 0.94148 1.22601 0.97923 0.92180 1.01939 1.18366 0.97298 0.84837 0.92724 1.84817 1.45754 1.12917 1.87572 1.21900 0.98309 0.93183 0.98403 1.21214 0.98248 0.94494 0.97548 1.21290 1.01968 0.85779 0.95703 1.98399 1.95607 1.10944 1.98173 0.93146 0.96304 0.91250 0.92615 0.91549 0.90909 0.88059 0.81501 0.72255 0.80395 0.81321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.50 8.93 71.98 0.64 -5.86 16 2 C 0.26 14.01 2.63 44.25 0.12 14.13 16 3 H 0.01 0.65 6.91 -2.39 -0.02 0.63 16 4 C -0.54 -29.51 8.37 25.60 0.21 -29.29 16 5 H 0.06 3.26 7.48 -2.91 -0.02 3.24 16 6 C 0.02 0.85 5.30 84.65 0.45 1.30 16 7 N -0.92 -53.31 11.32 21.45 0.24 -53.07 16 8 Si 0.97 43.24 29.54 68.60 2.03 45.27 16 9 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 10 H -0.29 -12.79 7.11 99.48 0.71 -12.09 16 11 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 12 N -0.59 -25.92 2.75 -830.27 -2.29 -28.20 16 13 C 0.07 2.15 7.97 127.77 1.02 3.17 16 14 C 0.53 23.46 7.40 86.77 0.64 24.10 16 15 O -0.57 -30.17 13.78 -3.90 -0.05 -30.23 16 16 C -0.12 -4.13 5.55 -20.08 -0.11 -4.24 16 17 C -0.13 -3.26 7.49 22.63 0.17 -3.09 16 18 C 0.11 2.12 6.70 22.46 0.15 2.27 16 19 O -0.50 -7.06 13.50 -92.70 -1.25 -8.32 16 20 C -0.10 -1.54 9.98 22.41 0.22 -1.32 16 21 C -0.10 -1.90 9.81 22.24 0.22 -1.68 16 22 C -0.02 -0.58 6.34 22.60 0.14 -0.44 16 23 Cl -0.06 -2.05 26.29 -2.72 -0.07 -2.12 16 24 H 0.05 2.21 6.70 -2.39 -0.02 2.20 16 25 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.07 3.77 6.07 -2.39 -0.01 3.75 16 27 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 28 H 0.07 1.98 7.00 -2.39 -0.02 1.97 16 29 H 0.07 2.27 6.46 -2.39 -0.02 2.25 16 30 H 0.10 2.49 4.98 -2.38 -0.01 2.48 16 31 H 0.17 4.13 4.23 -2.91 -0.01 4.12 16 32 H 0.42 1.46 9.06 -74.06 -0.67 0.78 16 33 H 0.18 1.42 8.06 -2.91 -0.02 1.39 16 34 H 0.17 2.32 8.06 -2.91 -0.02 2.30 16 Total: -1.00 -74.69 296.43 2.97 -71.72 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: 0.49 Total: 5.92 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: 3.88 Total: -0.97 kcal Atomic # 7 Polarization: -79.23 SS G_CDS: -2.04 Total: -81.27 kcal Atomic # 8 Polarization: -37.24 SS G_CDS: -1.31 Total: -38.54 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Atomic # 17 Polarization: -2.05 SS G_CDS: -0.07 Total: -2.12 kcal Total: -74.69 2.97 -71.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235411576.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.404 kcal (2) G-P(sol) polarization free energy of solvation -74.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds