Wall clock time and date at job start Tue Mar 31 2020 05:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42898 * 109.47204 * 2 1 4 4 C 1.35922 * 117.00241 * 180.02562 * 3 2 1 5 5 C 1.38712 * 120.05692 * 0.02562 * 4 3 2 6 6 C 1.38152 * 119.95539 * 179.70611 * 5 4 3 7 7 C 1.38279 * 120.07551 * 0.55242 * 6 5 4 8 8 C 1.50700 * 119.93762 * 179.72726 * 7 6 5 9 9 N 1.46498 * 109.46769 * 269.72042 * 8 7 6 10 10 C 1.34777 * 119.99828 * 179.72341 * 9 8 7 11 11 O 1.21693 * 120.00014 * 0.28042 * 10 9 8 12 12 C 1.46373 * 120.00147 * 180.27610 * 10 9 8 13 13 H 1.08002 * 120.00141 * 0.02562 * 12 10 9 14 14 C 1.40050 * 120.00087 * 179.97438 * 12 10 9 15 15 N 1.30674 * 120.00151 * 0.02562 * 14 12 10 16 16 Si 1.86803 * 119.99913 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.46768 * 60.00340 * 16 14 12 18 18 H 1.48504 * 109.47036 * 180.02562 * 16 14 12 19 19 H 1.48493 * 109.47374 * 300.00617 * 16 14 12 20 20 C 1.38245 * 120.11907 * 359.44392 * 7 6 5 21 21 C 1.38251 * 120.04216 * 0.28137 * 20 7 6 22 22 Cl 1.73597 * 120.03727 * 180.02562 * 21 20 7 23 23 H 1.08994 * 109.47462 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.47173 * 300.00208 * 1 2 3 25 25 H 1.09003 * 109.47091 * 60.00007 * 1 2 3 26 26 H 1.09000 * 109.46956 * 239.99543 * 2 1 3 27 27 H 1.09003 * 109.47091 * 119.99993 * 2 1 3 28 28 H 1.08002 * 120.02160 * 359.97438 * 5 4 3 29 29 H 1.08000 * 119.96120 * 180.27209 * 6 5 4 30 30 H 1.09004 * 109.47210 * 149.72400 * 8 7 6 31 31 H 1.08994 * 109.47121 * 29.72369 * 8 7 6 32 32 H 0.97001 * 120.00384 * 0.02562 * 9 8 7 33 33 H 0.96991 * 119.99824 * 179.97438 * 15 14 12 34 34 H 1.07998 * 119.97619 * 180.25560 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3538 1.5254 -0.0005 5 6 4.1999 0.4262 -0.0016 6 6 5.5692 0.6097 -0.0083 7 6 6.0972 1.8877 -0.0024 8 6 7.5913 2.0842 -0.0035 9 7 8.0765 2.1473 1.3774 10 6 9.3911 2.3144 1.6227 11 8 10.1745 2.4180 0.6972 12 6 9.8767 2.3715 3.0024 13 1 9.1816 2.2793 3.8238 14 6 11.2429 2.5446 3.2573 15 7 12.0841 2.6557 2.2635 16 14 11.8625 2.6181 5.0181 17 1 11.5253 1.3507 5.7147 18 1 13.3356 2.8062 5.0170 19 1 11.2191 3.7562 5.7221 20 6 5.2568 2.9854 -0.0014 21 6 3.8858 2.8075 -0.0004 22 17 2.8307 4.1860 0.0002 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.7885 -0.5724 -0.0016 29 1 6.2280 -0.2461 -0.0136 30 1 7.8351 3.0142 -0.5171 31 1 8.0671 1.2494 -0.5180 32 1 7.4521 2.0645 2.1151 33 1 13.0302 2.7759 2.4401 34 1 5.6717 3.9825 -0.0010 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258727409.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:21 Heat of formation + Delta-G solvation = -90.953636 kcal Electronic energy + Delta-G solvation = -18955.965684 eV Core-core repulsion = 15685.678742 eV Total energy + Delta-G solvation = -3270.286942 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.33494 -39.60260 -38.64310 -37.45018 -35.25276 -34.43421 -32.81604 -31.91889 -31.10429 -28.59338 -26.33484 -24.99891 -23.15685 -22.31820 -21.64622 -19.49446 -19.24756 -17.50641 -17.35287 -17.12242 -16.86501 -16.12412 -15.86778 -15.57068 -15.14233 -14.83062 -14.67873 -14.50386 -14.18426 -13.41621 -13.33717 -13.28371 -13.14222 -12.77224 -12.75452 -12.62238 -12.54950 -12.37747 -12.05139 -12.00607 -11.77921 -11.64963 -10.90851 -10.00568 -9.89498 -9.48916 -9.19019 -8.27414 -6.84642 0.07676 0.15634 1.13274 1.41608 1.44921 1.56634 2.11271 2.25373 2.45672 2.48176 3.33496 3.60859 3.66474 3.72808 3.91156 4.08781 4.15601 4.20761 4.27105 4.39486 4.52485 4.75785 4.80859 4.86926 4.93219 4.96789 5.10113 5.26712 5.33035 5.49269 5.55772 5.88261 6.20782 6.26269 6.28065 6.87791 7.54281 8.49395 8.67993 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.026136 B = 0.003294 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.060624 B = 8498.925649 C = 8689.749414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.041 3.959 3 O -0.319 6.319 4 C 0.139 3.861 5 C -0.189 4.189 6 C -0.055 4.055 7 C -0.124 4.124 8 C 0.180 3.820 9 N -0.750 5.750 10 C 0.539 3.461 11 O -0.632 6.632 12 C -0.573 4.573 13 H 0.087 0.913 14 C 0.029 3.971 15 N -0.822 5.822 16 Si 0.998 3.002 17 H -0.253 1.253 18 H -0.274 1.274 19 H -0.256 1.256 20 C -0.060 4.060 21 C -0.083 4.083 22 Cl -0.062 7.062 23 H 0.102 0.898 24 H 0.060 0.940 25 H 0.061 0.939 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.168 0.832 29 H 0.145 0.855 30 H 0.043 0.957 31 H 0.051 0.949 32 H 0.394 0.606 33 H 0.275 0.725 34 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.525 -6.221 -2.168 23.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.033 4.033 3 O -0.233 6.233 4 C 0.092 3.908 5 C -0.207 4.207 6 C -0.073 4.073 7 C -0.125 4.125 8 C 0.056 3.944 9 N -0.404 5.404 10 C 0.343 3.657 11 O -0.519 6.519 12 C -0.610 4.610 13 H 0.105 0.895 14 C -0.186 4.186 15 N -0.451 5.451 16 Si 0.817 3.183 17 H -0.177 1.177 18 H -0.199 1.199 19 H -0.180 1.180 20 C -0.079 4.079 21 C -0.111 4.111 22 Cl -0.034 7.034 23 H 0.120 0.880 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.096 0.904 27 H 0.094 0.906 28 H 0.186 0.814 29 H 0.163 0.837 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.227 0.773 33 H 0.085 0.915 34 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -22.069 -5.864 -2.940 23.023 hybrid contribution 0.326 0.228 0.675 0.783 sum -21.742 -5.636 -2.265 22.575 Atomic orbital electron populations 1.21801 0.91480 1.04206 1.03107 1.23189 0.96972 0.80321 1.02853 1.86151 1.17377 1.31811 1.87942 1.18743 0.83888 0.92187 0.95960 1.21431 0.93034 0.98802 1.07473 1.21182 0.95100 0.96657 0.94386 1.19679 0.94043 0.93676 1.05094 1.19692 0.89015 1.00295 0.85407 1.45884 1.08158 1.79985 1.06415 1.18595 0.80405 0.76124 0.90546 1.90557 1.56349 1.57244 1.47766 1.21400 0.94202 1.53819 0.91574 0.89517 1.26971 0.96601 0.91284 1.03772 1.70177 1.03807 1.35867 1.35276 0.85074 0.77228 0.80245 0.75760 1.17727 1.19920 1.17967 1.20842 0.90109 1.00020 0.96952 1.20191 0.90926 0.86846 1.13108 1.98346 1.65907 1.41885 1.97220 0.87983 0.92050 0.91948 0.90428 0.90586 0.81423 0.83701 0.93902 0.93101 0.77281 0.91532 0.84540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 10.28 71.98 0.74 -0.71 16 2 C 0.04 0.52 5.46 71.98 0.39 0.91 16 3 O -0.32 -6.72 9.60 -92.67 -0.89 -7.61 16 4 C 0.14 3.26 6.68 22.52 0.15 3.41 16 5 C -0.19 -3.82 9.04 22.36 0.20 -3.61 16 6 C -0.05 -1.32 9.69 22.26 0.22 -1.11 16 7 C -0.12 -3.67 5.25 -19.85 -0.10 -3.78 16 8 C 0.18 6.97 5.80 85.63 0.50 7.46 16 9 N -0.75 -33.80 5.54 -471.15 -2.61 -36.41 16 10 C 0.54 31.36 7.75 86.36 0.67 32.03 16 11 O -0.63 -42.48 15.02 -4.33 -0.06 -42.55 16 12 C -0.57 -32.58 9.54 24.83 0.24 -32.35 16 13 H 0.09 4.41 7.85 -2.91 -0.02 4.39 16 14 C 0.03 1.61 5.50 85.30 0.47 2.08 16 15 N -0.82 -50.49 11.83 21.84 0.26 -50.23 16 16 Si 1.00 40.92 29.56 68.60 2.03 42.95 16 17 H -0.25 -9.72 7.11 99.48 0.71 -9.02 16 18 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 19 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 20 C -0.06 -1.71 9.48 22.27 0.21 -1.50 16 21 C -0.08 -2.22 6.33 22.41 0.14 -2.07 16 22 Cl -0.06 -1.59 28.50 -2.72 -0.08 -1.67 16 23 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 24 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 25 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.08 0.78 7.66 -2.39 -0.02 0.76 16 27 H 0.08 0.80 7.66 -2.39 -0.02 0.78 16 28 H 0.17 2.23 6.30 -2.91 -0.02 2.21 16 29 H 0.15 3.17 8.06 -2.91 -0.02 3.14 16 30 H 0.04 1.78 8.08 -2.38 -0.02 1.76 16 31 H 0.05 2.05 8.08 -2.39 -0.02 2.03 16 32 H 0.39 15.66 8.44 -92.71 -0.78 14.88 16 33 H 0.27 15.30 8.29 -92.71 -0.77 14.53 16 34 H 0.14 3.90 8.06 -2.91 -0.02 3.88 16 Total: -1.00 -75.77 315.09 2.81 -72.96 By element: Atomic # 1 Polarization: 21.44 SS G_CDS: 0.35 Total: 21.79 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: 3.82 Total: 0.77 kcal Atomic # 7 Polarization: -84.29 SS G_CDS: -2.35 Total: -86.64 kcal Atomic # 8 Polarization: -49.20 SS G_CDS: -0.95 Total: -50.15 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 2.03 Total: 42.95 kcal Atomic # 17 Polarization: -1.59 SS G_CDS: -0.08 Total: -1.67 kcal Total: -75.77 2.81 -72.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258727409.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.996 kcal (2) G-P(sol) polarization free energy of solvation -75.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds