Wall clock time and date at job start Tue Mar 31 2020 05:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35930 * 116.99986 * 2 1 4 4 C 1.38707 * 120.05650 * 359.72179 * 3 2 1 5 5 C 1.38150 * 119.95366 * 180.29946 * 4 3 2 6 6 C 1.38282 * 120.07704 * 359.95953 * 5 4 3 7 7 C 1.50697 * 119.93922 * 180.02562 * 6 5 4 8 8 C 1.53000 * 109.47110 * 270.01854 * 7 6 5 9 9 C 1.50702 * 109.47108 * 180.02562 * 8 7 6 10 10 O 1.21293 * 120.00203 * 359.97438 * 9 8 7 11 11 N 1.34774 * 119.99899 * 180.02562 * 9 8 7 12 12 C 1.37095 * 119.99856 * 179.97438 * 11 9 8 13 13 H 1.08000 * 120.00456 * 359.97438 * 12 11 9 14 14 C 1.38955 * 120.00094 * 179.97438 * 12 11 9 15 15 N 1.31409 * 120.00190 * 179.97438 * 14 12 11 16 16 Si 1.86798 * 119.99881 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47174 * 89.99795 * 16 14 12 18 18 H 1.48500 * 109.47238 * 209.99827 * 16 14 12 19 19 H 1.48501 * 109.46909 * 330.00037 * 16 14 12 20 20 C 1.38249 * 120.12038 * 0.03767 * 6 5 4 21 21 C 1.38253 * 120.04031 * 359.97438 * 20 6 5 22 22 Cl 1.73601 * 120.03985 * 179.97438 * 21 20 6 23 23 H 1.08997 * 109.46894 * 300.00228 * 1 2 3 24 24 H 1.09001 * 109.46908 * 60.00014 * 1 2 3 25 25 H 1.09002 * 109.46907 * 180.02562 * 1 2 3 26 26 H 1.07998 * 120.02447 * 0.27659 * 4 3 2 27 27 H 1.07993 * 119.96357 * 179.97438 * 5 4 3 28 28 H 1.08998 * 109.47317 * 30.02322 * 7 6 5 29 29 H 1.09000 * 109.47154 * 150.01851 * 7 6 5 30 30 H 1.08998 * 109.46958 * 299.99787 * 8 7 6 31 31 H 1.08992 * 109.47366 * 59.99952 * 8 7 6 32 32 H 0.97002 * 120.00123 * 359.97438 * 11 9 8 33 33 H 0.97002 * 120.00285 * 180.02562 * 15 14 12 34 34 H 1.07993 * 119.97937 * 180.02562 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2111 0.0000 4 6 1.2919 2.3752 -0.0058 5 6 1.9213 3.6050 -0.0121 6 6 3.3022 3.6767 -0.0117 7 6 3.9856 5.0198 -0.0179 8 6 4.2172 5.4675 -1.4625 9 6 4.9011 6.8103 -1.4687 10 8 5.1758 7.3559 -0.4209 11 7 5.2066 7.4055 -2.6387 12 6 5.8283 8.6274 -2.6444 13 1 6.0729 9.1132 -1.7114 14 6 6.1438 9.2409 -3.8506 15 7 6.7393 10.4123 -3.8561 16 14 5.7201 8.4010 -5.4644 17 1 4.3603 8.8138 -5.8952 18 1 6.7082 8.7936 -6.5011 19 1 5.7550 6.9279 -5.2799 20 6 4.0571 2.5185 -0.0058 21 6 3.4323 1.2852 0.0002 22 17 4.3802 -0.1692 0.0069 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.2133 2.3202 -0.0059 27 1 1.3342 4.5113 -0.0170 28 1 3.3570 5.7496 0.4923 29 1 4.9434 4.9425 0.4965 30 1 4.8458 4.7376 -1.9727 31 1 3.2595 5.5447 -1.9770 32 1 4.9866 6.9694 -3.4768 33 1 6.9592 10.8407 -4.6981 34 1 5.1354 2.5772 -0.0051 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259758293.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:59 Heat of formation + Delta-G solvation = -86.447929 kcal Electronic energy + Delta-G solvation = -18887.434779 eV Core-core repulsion = 15617.343220 eV Total energy + Delta-G solvation = -3270.091560 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.24183 -40.29939 -38.76022 -37.42751 -36.08474 -34.34499 -33.71041 -31.88502 -30.44187 -28.33231 -27.02357 -24.76042 -23.70768 -22.04477 -21.18043 -20.11746 -19.20363 -17.83224 -17.52967 -16.85003 -16.71698 -16.49212 -16.16291 -15.45205 -15.35516 -14.89610 -14.86040 -14.65655 -14.24645 -14.09562 -13.86381 -13.18916 -12.98709 -12.89861 -12.61771 -12.44574 -12.40298 -12.12803 -11.97643 -11.80066 -11.78024 -11.74778 -11.51504 -10.45303 -10.24698 -9.88109 -9.07958 -8.41432 -6.02273 0.14945 0.27655 1.19421 1.31272 1.35755 1.44973 1.96848 2.23240 2.28589 2.55518 2.99202 3.15825 3.74925 3.82843 3.99348 4.16561 4.18267 4.31914 4.41656 4.43564 4.46489 4.49948 4.73815 4.77790 4.79849 5.00802 5.07538 5.21333 5.28658 5.55403 5.59823 5.66455 5.95903 6.30749 6.58193 6.87941 7.40245 7.96497 8.76251 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.025884 B = 0.003202 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.483557 B = 8742.666428 C = 8793.577655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.326 6.326 3 C 0.123 3.877 4 C -0.189 4.189 5 C -0.069 4.069 6 C -0.104 4.104 7 C -0.050 4.050 8 C -0.115 4.115 9 C 0.448 3.552 10 O -0.627 6.627 11 N -0.592 5.592 12 C -0.331 4.331 13 H 0.056 0.944 14 C -0.015 4.015 15 N -0.935 5.935 16 Si 0.963 3.037 17 H -0.255 1.255 18 H -0.275 1.275 19 H -0.232 1.232 20 C -0.075 4.075 21 C -0.084 4.084 22 Cl -0.068 7.068 23 H 0.068 0.932 24 H 0.069 0.931 25 H 0.118 0.882 26 H 0.165 0.835 27 H 0.151 0.849 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.104 0.896 31 H 0.111 0.889 32 H 0.390 0.610 33 H 0.279 0.721 34 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.323 -23.759 2.938 28.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.239 6.239 3 C 0.077 3.923 4 C -0.208 4.208 5 C -0.087 4.087 6 C -0.105 4.105 7 C -0.088 4.088 8 C -0.155 4.155 9 C 0.237 3.763 10 O -0.513 6.513 11 N -0.232 5.232 12 C -0.460 4.460 13 H 0.074 0.926 14 C -0.213 4.213 15 N -0.575 5.575 16 Si 0.783 3.217 17 H -0.180 1.180 18 H -0.201 1.201 19 H -0.156 1.156 20 C -0.094 4.094 21 C -0.111 4.111 22 Cl -0.039 7.039 23 H 0.087 0.913 24 H 0.087 0.913 25 H 0.136 0.864 26 H 0.182 0.818 27 H 0.169 0.831 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.122 0.878 31 H 0.130 0.870 32 H 0.226 0.774 33 H 0.089 0.911 34 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -14.895 -23.559 3.526 28.095 hybrid contribution 0.278 0.285 -0.789 0.884 sum -14.616 -23.274 2.736 27.619 Atomic orbital electron populations 1.23410 0.76019 1.05741 1.02626 1.86136 1.23720 1.25805 1.88278 1.18845 0.90382 0.86000 0.97120 1.21458 1.01495 0.90628 1.07204 1.21253 0.93545 0.98457 0.95420 1.19713 0.94062 0.93898 1.02829 1.20105 1.00777 0.92533 0.95416 1.21539 1.02387 0.92225 0.99326 1.21150 0.82928 0.89144 0.83050 1.90540 1.59274 1.68373 1.33081 1.42121 1.54824 1.18487 1.07816 1.19051 1.36343 0.95681 0.94934 0.92579 1.26119 0.96118 0.96430 1.02676 1.69803 1.41641 1.16953 1.29118 0.85382 0.79347 0.80143 0.76793 1.17980 1.20054 1.15556 1.20929 1.01038 0.89321 0.98091 1.20297 0.89320 0.88555 1.12941 1.98349 1.71878 1.36487 1.97228 0.91313 0.91259 0.86425 0.81791 0.83117 0.90780 0.91631 0.87771 0.87045 0.77420 0.91134 0.84044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 113.37 1.11 1.26 16 2 O -0.33 -5.99 9.96 -92.76 -0.92 -6.92 16 3 C 0.12 2.47 6.68 22.52 0.15 2.62 16 4 C -0.19 -3.05 9.04 22.36 0.20 -2.85 16 5 C -0.07 -1.24 9.69 22.26 0.22 -1.02 16 6 C -0.10 -2.30 5.13 -19.85 -0.10 -2.41 16 7 C -0.05 -1.37 4.63 29.85 0.14 -1.23 16 8 C -0.11 -3.33 5.68 29.85 0.17 -3.16 16 9 C 0.45 19.84 7.78 87.66 0.68 20.52 16 10 O -0.63 -34.09 15.56 -3.07 -0.05 -34.14 16 11 N -0.59 -27.80 5.09 -306.98 -1.56 -29.36 16 12 C -0.33 -19.38 10.16 84.04 0.85 -18.53 16 13 H 0.06 3.91 7.39 -2.91 -0.02 3.88 16 14 C -0.01 -0.82 5.50 84.93 0.47 -0.35 16 15 N -0.93 -56.40 13.96 21.66 0.30 -56.10 16 16 Si 0.96 38.74 27.74 68.60 1.90 40.65 16 17 H -0.26 -9.67 7.11 99.48 0.71 -8.97 16 18 H -0.28 -11.02 7.11 99.48 0.71 -10.32 16 19 H -0.23 -7.91 6.52 99.48 0.65 -7.26 16 20 C -0.08 -1.69 9.48 22.28 0.21 -1.48 16 21 C -0.08 -1.90 6.33 22.41 0.14 -1.76 16 22 Cl -0.07 -1.54 28.50 -2.72 -0.08 -1.62 16 23 H 0.07 0.46 7.67 -2.39 -0.02 0.44 16 24 H 0.07 0.46 7.65 -2.39 -0.02 0.45 16 25 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.16 1.61 6.30 -2.91 -0.02 1.59 16 27 H 0.15 2.17 8.06 -2.91 -0.02 2.14 16 28 H 0.07 2.12 8.04 -2.39 -0.02 2.10 16 29 H 0.06 1.98 8.04 -2.39 -0.02 1.96 16 30 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 31 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 32 H 0.39 15.18 5.76 -92.71 -0.53 14.65 16 33 H 0.28 15.38 8.31 -92.71 -0.77 14.61 16 34 H 0.14 3.03 8.06 -2.91 -0.02 3.00 16 Total: -1.00 -76.21 311.16 4.37 -71.83 By element: Atomic # 1 Polarization: 23.51 SS G_CDS: 0.54 Total: 24.05 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: 4.24 Total: -8.40 kcal Atomic # 7 Polarization: -84.20 SS G_CDS: -1.26 Total: -85.46 kcal Atomic # 8 Polarization: -40.08 SS G_CDS: -0.97 Total: -41.06 kcal Atomic # 14 Polarization: 38.74 SS G_CDS: 1.90 Total: 40.65 kcal Atomic # 17 Polarization: -1.54 SS G_CDS: -0.08 Total: -1.62 kcal Total: -76.21 4.37 -71.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259758293.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.615 kcal (2) G-P(sol) polarization free energy of solvation -76.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds