Wall clock time and date at job start Tue Mar 31 2020 05:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47412 * 2 1 4 4 C 1.50708 * 109.47136 * 240.00163 * 2 1 3 5 5 H 1.08000 * 120.00007 * 239.99702 * 4 2 1 6 6 C 1.37878 * 119.99648 * 60.00299 * 4 2 1 7 7 N 1.31520 * 120.00122 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99839 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47086 * 359.97438 * 8 6 4 10 10 H 1.48492 * 109.47295 * 119.99470 * 8 6 4 11 11 H 1.48499 * 109.46774 * 239.99636 * 8 6 4 12 12 N 1.46504 * 109.47578 * 120.00134 * 2 1 3 13 13 C 1.34770 * 120.00046 * 275.00118 * 12 2 1 14 14 O 1.21281 * 120.00277 * 359.97438 * 13 12 2 15 15 C 1.50696 * 119.99809 * 179.97438 * 13 12 2 16 16 H 1.08999 * 109.47358 * 305.00091 * 15 13 12 17 17 O 1.42903 * 109.47131 * 184.99731 * 15 13 12 18 18 C 1.50707 * 109.47163 * 65.00534 * 15 13 12 19 19 C 1.38233 * 120.00684 * 94.99560 * 18 15 13 20 20 C 1.38228 * 120.00965 * 180.02562 * 19 18 15 21 21 C 1.38258 * 120.02540 * 359.97438 * 20 19 18 22 22 C 1.38195 * 120.01734 * 359.97438 * 21 20 19 23 23 C 1.38328 * 120.00242 * 274.72318 * 18 15 13 24 24 Cl 1.73605 * 120.01318 * 359.97438 * 23 18 15 25 25 H 1.08997 * 109.47215 * 59.99808 * 1 2 3 26 26 H 1.09004 * 109.46744 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.46687 * 299.99711 * 1 2 3 28 28 H 0.97005 * 119.99689 * 180.02562 * 7 6 4 29 29 H 0.97004 * 119.99665 * 94.99431 * 12 2 1 30 30 H 0.96700 * 114.00311 * 300.00591 * 17 15 13 31 31 H 1.07995 * 119.99601 * 0.02562 * 19 18 15 32 32 H 1.07997 * 119.98064 * 179.97438 * 20 19 18 33 33 H 1.08001 * 119.98990 * 179.97438 * 21 20 19 34 34 H 1.08002 * 120.01017 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9428 0.8299 -2.6034 8 14 2.3213 -1.1201 -4.0081 9 1 3.1463 -2.2868 -3.6040 10 1 1.1661 -1.5864 -4.8161 11 1 3.1465 -0.1871 -4.8165 12 7 2.0184 -0.6906 1.1962 13 6 2.1472 -0.0184 2.3571 14 8 1.8591 1.1585 2.4115 15 6 2.6491 -0.7289 3.5876 16 1 2.0277 -1.6033 3.7811 17 8 2.5875 0.1566 4.7075 18 6 4.0753 -1.1645 3.3696 19 6 5.1162 -0.3674 3.8079 20 6 6.4243 -0.7665 3.6075 21 6 6.6924 -1.9633 2.9692 22 6 5.6527 -2.7614 2.5315 23 6 4.3429 -2.3646 2.7359 24 17 3.0360 -3.3697 2.1921 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 0.7082 1.1611 -3.4844 29 1 2.2491 -1.6318 1.1525 30 1 3.1181 0.9584 4.6046 31 1 4.9073 0.5673 4.3069 32 1 7.2372 -0.1433 3.9498 33 1 7.7147 -2.2744 2.8125 34 1 5.8622 -3.6964 2.0332 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271100789.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:06 Heat of formation + Delta-G solvation = -94.197913 kcal Electronic energy + Delta-G solvation = -20287.849694 eV Core-core repulsion = 17017.422070 eV Total energy + Delta-G solvation = -3270.427624 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.52855 -39.93203 -37.90735 -37.51460 -36.58465 -34.47304 -32.83393 -31.78767 -30.90363 -27.96250 -27.35911 -23.75075 -23.70716 -22.60090 -21.34828 -19.67929 -18.91456 -17.88635 -17.57668 -17.08887 -16.92741 -16.20716 -15.94526 -15.54836 -15.04089 -14.89759 -14.64361 -14.55112 -14.43240 -13.86574 -13.37722 -13.06820 -12.95124 -12.90404 -12.81085 -12.54999 -12.42421 -12.31650 -12.21901 -12.14030 -11.76442 -11.14496 -10.80403 -10.63096 -9.93582 -9.86844 -9.71892 -8.20536 -6.38358 0.02463 0.20309 0.96562 1.41898 1.42495 1.54616 1.56287 2.25662 2.44707 2.61746 3.09313 3.19159 3.35487 3.70001 3.81736 3.95462 4.16552 4.34763 4.44690 4.57340 4.68511 4.84151 4.86453 5.03081 5.14983 5.27807 5.35654 5.39329 5.53796 5.61213 5.78608 5.82213 6.04421 6.35052 6.67410 6.81307 7.23809 7.39138 8.86177 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.016921 B = 0.006295 C = 0.005437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.325794 B = 4446.966727 C = 5148.946607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.266 3.734 3 H 0.002 0.998 4 C -0.546 4.546 5 H 0.067 0.933 6 C 0.017 3.983 7 N -0.915 5.915 8 Si 0.970 3.030 9 H -0.260 1.260 10 H -0.276 1.276 11 H -0.280 1.280 12 N -0.699 5.699 13 C 0.473 3.527 14 O -0.585 6.585 15 C 0.142 3.858 16 H 0.138 0.862 17 O -0.533 6.533 18 C -0.128 4.128 19 C -0.106 4.106 20 C -0.106 4.106 21 C -0.099 4.099 22 C -0.111 4.111 23 C -0.046 4.046 24 Cl -0.066 7.066 25 H 0.071 0.929 26 H 0.038 0.962 27 H 0.013 0.987 28 H 0.267 0.733 29 H 0.399 0.601 30 H 0.391 0.609 31 H 0.147 0.853 32 H 0.165 0.835 33 H 0.169 0.831 34 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.438 -8.711 11.884 19.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.163 3.837 3 H 0.020 0.980 4 C -0.584 4.584 5 H 0.085 0.915 6 C -0.183 4.183 7 N -0.554 5.554 8 Si 0.794 3.206 9 H -0.184 1.184 10 H -0.202 1.202 11 H -0.206 1.206 12 N -0.354 5.354 13 C 0.258 3.742 14 O -0.467 6.467 15 C 0.079 3.921 16 H 0.156 0.844 17 O -0.340 6.340 18 C -0.129 4.129 19 C -0.124 4.124 20 C -0.124 4.124 21 C -0.116 4.116 22 C -0.129 4.129 23 C -0.072 4.072 24 Cl -0.037 7.037 25 H 0.090 0.910 26 H 0.057 0.943 27 H 0.032 0.968 28 H 0.076 0.924 29 H 0.240 0.760 30 H 0.242 0.758 31 H 0.164 0.836 32 H 0.182 0.818 33 H 0.187 0.813 34 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 11.637 -8.334 11.963 18.654 hybrid contribution -0.027 -0.100 -1.252 1.256 sum 11.610 -8.433 10.711 17.906 Atomic orbital electron populations 1.21919 0.98183 0.99464 0.99854 1.18444 0.91280 0.92081 0.81889 0.97989 1.21478 1.32713 1.13448 0.90779 0.91457 1.25781 0.94771 0.95552 1.02188 1.70052 1.36793 1.23837 1.24671 0.85328 0.78286 0.78636 0.78364 1.18406 1.20173 1.20558 1.46804 1.64046 1.14874 1.09676 1.21862 0.78347 0.87738 0.86234 1.90634 1.53014 1.17576 1.85464 1.20621 0.93844 0.93281 0.84336 0.84443 1.86560 1.74187 1.35744 1.37487 1.20102 0.95635 0.95251 1.01946 1.21196 0.92429 0.99606 0.99158 1.21651 0.96413 0.96941 0.97379 1.21639 1.00314 0.93689 0.95998 1.21401 0.89602 1.01979 0.99922 1.20964 0.90439 0.93234 1.02606 1.98359 1.49188 1.67924 1.88220 0.90996 0.94272 0.96804 0.92390 0.76039 0.75804 0.83580 0.81758 0.81308 0.82717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.17 9.26 71.98 0.67 -6.51 16 2 C 0.27 14.47 2.56 44.25 0.11 14.58 16 3 H 0.00 0.14 7.58 -2.39 -0.02 0.12 16 4 C -0.55 -29.90 8.73 25.60 0.22 -29.68 16 5 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 6 C 0.02 0.95 5.30 84.65 0.45 1.39 16 7 N -0.92 -52.95 11.32 21.45 0.24 -52.71 16 8 Si 0.97 42.35 29.54 68.60 2.03 44.38 16 9 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 10 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 11 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 12 N -0.70 -31.69 5.02 -446.09 -2.24 -33.93 16 13 C 0.47 20.31 7.12 87.66 0.62 20.93 16 14 O -0.59 -29.54 15.99 15.96 0.26 -29.28 16 15 C 0.14 4.61 3.22 29.10 0.09 4.70 16 16 H 0.14 4.19 7.11 -2.39 -0.02 4.17 16 17 O -0.53 -16.19 12.64 -129.99 -1.64 -17.83 16 18 C -0.13 -3.54 5.02 -19.84 -0.10 -3.64 16 19 C -0.11 -2.36 9.30 22.27 0.21 -2.16 16 20 C -0.11 -1.78 10.05 22.27 0.22 -1.56 16 21 C -0.10 -1.58 10.04 22.26 0.22 -1.35 16 22 C -0.11 -2.26 9.83 22.29 0.22 -2.04 16 23 C -0.05 -1.20 6.16 22.32 0.14 -1.07 16 24 Cl -0.07 -1.81 24.34 -2.72 -0.07 -1.87 16 25 H 0.07 4.09 6.07 -2.39 -0.01 4.08 16 26 H 0.04 1.91 8.14 -2.38 -0.02 1.89 16 27 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.27 14.48 8.31 -92.70 -0.77 13.71 16 29 H 0.40 16.19 4.80 -92.71 -0.44 15.74 16 30 H 0.39 9.96 7.07 -74.06 -0.52 9.44 16 31 H 0.15 2.73 6.41 -2.91 -0.02 2.71 16 32 H 0.16 1.64 8.06 -2.91 -0.02 1.62 16 33 H 0.17 1.48 8.06 -2.91 -0.02 1.45 16 34 H 0.16 2.51 8.06 -2.91 -0.02 2.48 16 Total: -1.00 -70.36 302.29 1.84 -68.53 By element: Atomic # 1 Polarization: 28.94 SS G_CDS: 0.18 Total: 29.12 kcal Atomic # 6 Polarization: -9.47 SS G_CDS: 3.08 Total: -6.39 kcal Atomic # 7 Polarization: -84.64 SS G_CDS: -2.00 Total: -86.64 kcal Atomic # 8 Polarization: -45.73 SS G_CDS: -1.39 Total: -47.12 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Atomic # 17 Polarization: -1.81 SS G_CDS: -0.07 Total: -1.87 kcal Total: -70.36 1.84 -68.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271100789.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.671 kcal (2) G-P(sol) polarization free energy of solvation -70.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds