Wall clock time and date at job start Tue Mar 31 2020 05:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35675 * 116.99893 * 2 1 4 4 C 1.38782 * 119.63563 * 179.97438 * 3 2 1 5 5 C 1.38590 * 119.27138 * 179.97438 * 4 3 2 6 6 C 1.38495 * 118.57026 * 0.02562 * 5 4 3 7 7 C 1.38982 * 119.22122 * 359.97438 * 6 5 4 8 8 N 1.39006 * 119.66867 * 179.97438 * 7 6 5 9 9 N 1.40095 * 119.99721 * 180.02562 * 8 7 6 10 10 C 1.34775 * 119.99750 * 180.02562 * 9 8 7 11 11 O 1.21281 * 120.00166 * 359.97438 * 10 9 8 12 12 C 1.50707 * 119.99910 * 180.02562 * 10 9 8 13 13 S 1.81005 * 109.46805 * 180.02562 * 12 10 9 14 14 C 1.76204 * 99.99496 * 179.97438 * 13 12 10 15 15 H 1.07998 * 120.00560 * 0.02562 * 14 13 12 16 16 C 1.38800 * 119.99433 * 179.97438 * 14 13 12 17 17 N 1.31630 * 120.00477 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99533 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47304 * 59.99949 * 18 16 14 20 20 H 1.48507 * 109.46955 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47199 * 299.99590 * 18 16 14 22 22 N 1.32318 * 119.63905 * 359.72765 * 3 2 1 23 23 H 1.09006 * 109.46808 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47352 * 299.99708 * 1 2 3 25 25 H 1.08999 * 109.47144 * 59.99732 * 1 2 3 26 26 H 1.08000 * 120.36472 * 359.96291 * 4 3 2 27 27 H 1.08004 * 120.71679 * 180.02562 * 5 4 3 28 28 H 1.08006 * 120.39050 * 179.97438 * 6 5 4 29 29 H 0.96996 * 119.99579 * 0.02562 * 8 7 6 30 30 H 0.96997 * 120.00115 * 0.02562 * 9 8 7 31 31 H 1.08996 * 109.46914 * 299.99362 * 12 10 9 32 32 H 1.08992 * 109.47144 * 59.99800 * 12 10 9 33 33 H 0.96996 * 119.99685 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4313 1.2727 0.0005 5 6 4.0526 2.5116 0.0000 6 6 3.2623 3.6489 -0.0005 7 6 1.8790 3.5139 -0.0010 8 7 1.0769 4.6492 -0.0010 9 7 -0.3182 4.5211 -0.0010 10 6 -1.0959 5.6218 -0.0015 11 8 -0.5880 6.7232 -0.0015 12 6 -2.5967 5.4841 -0.0009 13 16 -3.3533 7.1284 -0.0026 14 6 -5.0576 6.6808 -0.0023 15 1 -5.3424 5.6390 -0.0009 16 6 -6.0341 7.6672 -0.0028 17 7 -5.6871 8.9369 -0.0030 18 14 -7.8409 7.1926 -0.0018 19 1 -8.1414 6.3908 1.2114 20 1 -8.6753 8.4211 -0.0020 21 1 -8.1422 6.3889 -1.2135 22 7 1.3173 2.3140 -0.0055 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 4.0195 0.3670 0.0016 27 1 5.1299 2.5884 0.0000 28 1 3.7156 4.6292 -0.0005 29 1 1.4832 5.5300 -0.0010 30 1 -0.7243 3.6403 -0.0006 31 1 -2.9118 4.9387 -0.8904 32 1 -2.9112 4.9399 0.8895 33 1 -6.3696 9.6261 -0.0030 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272887955.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:29 Heat of formation + Delta-G solvation = 4.770357 kcal Electronic energy + Delta-G solvation = -18745.397117 eV Core-core repulsion = 15513.597536 eV Total energy + Delta-G solvation = -3231.799580 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.078 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.85675 -39.42414 -38.20046 -35.73334 -32.57514 -32.47963 -32.09728 -29.90580 -28.26301 -26.84370 -25.52139 -23.44253 -22.93625 -20.97942 -19.07276 -18.11183 -17.77745 -16.82727 -16.23815 -16.15995 -16.06034 -15.29467 -15.26643 -14.84904 -14.40896 -14.12673 -14.08871 -13.52534 -13.37967 -12.66856 -12.55429 -12.45951 -11.97868 -11.88002 -11.10577 -11.07679 -11.03731 -10.83002 -10.06181 -10.02356 -9.89637 -9.71381 -9.11329 -9.04423 -8.33399 -7.51321 -6.57444 -6.26854 -3.98672 1.12147 1.17523 1.86337 2.86238 2.87794 3.14758 3.20884 3.25820 3.36777 3.65458 3.73179 4.14852 4.58077 4.77925 4.86770 5.02829 5.06569 5.08608 5.12216 5.13314 5.31771 5.44125 5.54765 5.71525 5.75021 6.02022 6.06971 6.09821 6.64956 6.88711 7.23894 7.51800 7.54760 7.86891 8.29799 8.49567 9.18455 10.80500 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.029154 B = 0.003175 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.191604 B = 8818.019080 C = 9757.764635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.307 6.307 3 C 0.372 3.628 4 C -0.256 4.256 5 C 0.005 3.995 6 C -0.270 4.270 7 C 0.446 3.554 8 N -0.512 5.512 9 N -0.526 5.526 10 C 0.532 3.468 11 O -0.520 6.520 12 C -0.144 4.144 13 S -0.051 6.051 14 C -0.539 4.539 15 H 0.074 0.926 16 C 0.075 3.925 17 N -0.868 5.868 18 Si 0.920 3.080 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.273 1.273 22 N -0.603 5.603 23 H 0.096 0.904 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.137 0.863 27 H 0.142 0.858 28 H 0.137 0.863 29 H 0.443 0.557 30 H 0.428 0.572 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.339 -16.444 0.020 23.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.214 6.214 3 C 0.192 3.808 4 C -0.279 4.279 5 C -0.020 4.020 6 C -0.297 4.297 7 C 0.210 3.790 8 N -0.240 5.240 9 N -0.275 5.275 10 C 0.318 3.682 11 O -0.393 6.393 12 C -0.296 4.296 13 S 0.175 5.825 14 C -0.687 4.687 15 H 0.092 0.908 16 C -0.135 4.135 17 N -0.503 5.503 18 Si 0.746 3.254 19 H -0.199 1.199 20 H -0.208 1.208 21 H -0.199 1.199 22 N -0.338 5.338 23 H 0.114 0.886 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.155 0.845 27 H 0.160 0.840 28 H 0.155 0.845 29 H 0.288 0.712 30 H 0.269 0.731 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 16.105 -14.731 0.013 21.826 hybrid contribution -1.219 -1.464 0.004 1.905 sum 14.887 -16.195 0.016 21.998 Atomic orbital electron populations 1.22882 0.77121 1.03045 1.02662 1.86257 1.23034 1.24549 1.87535 1.19367 0.89007 0.83333 0.89081 1.20716 0.91549 0.99475 1.16202 1.21040 0.99991 0.90430 0.90560 1.20996 0.91110 1.00760 1.16817 1.17737 0.87117 0.84497 0.89684 1.43319 0.94069 1.06649 1.79944 1.45052 0.93598 1.10901 1.77923 1.20641 0.88709 0.83077 0.75789 1.90721 1.74796 1.25265 1.48476 1.23463 0.91354 1.09222 1.05553 1.85444 1.02125 0.98140 1.96773 1.22831 0.90923 0.95548 1.59390 0.90792 1.24995 0.99678 0.94431 0.94392 1.69999 1.34366 0.99319 1.46568 0.86201 0.82307 0.78015 0.78852 1.19886 1.20783 1.19880 1.66444 1.41040 0.97633 1.28690 0.88612 0.92158 0.92151 0.84467 0.83990 0.84512 0.71206 0.73059 0.88647 0.88644 0.92032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.38 101.05 1.05 1.37 16 2 O -0.31 -3.31 10.47 -18.73 -0.20 -3.51 16 3 C 0.37 4.26 7.48 -17.14 -0.13 4.13 16 4 C -0.26 -2.40 10.04 -39.25 -0.39 -2.80 16 5 C 0.01 0.04 10.16 -39.36 -0.40 -0.36 16 6 C -0.27 -2.56 9.93 -39.21 -0.39 -2.95 16 7 C 0.45 5.35 7.59 -155.00 -1.18 4.17 16 8 N -0.51 -6.71 6.42 31.11 0.20 -6.51 16 9 N -0.53 -7.61 6.29 31.22 0.20 -7.41 16 10 C 0.53 9.70 7.96 -10.98 -0.09 9.61 16 11 O -0.52 -11.25 15.70 5.56 0.09 -11.17 16 12 C -0.14 -2.80 6.16 36.01 0.22 -2.58 16 13 S -0.05 -1.34 20.57 -107.50 -2.21 -3.56 16 14 C -0.54 -15.01 9.50 30.94 0.29 -14.71 16 15 H 0.07 1.93 7.80 -52.49 -0.41 1.53 16 16 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 17 N -0.87 -25.76 13.22 55.49 0.73 -25.02 16 18 Si 0.92 21.05 29.55 -169.99 -5.02 16.03 16 19 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 22 N -0.60 -7.44 8.22 -12.51 -0.10 -7.54 16 23 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.06 0.53 8.11 -51.93 -0.42 0.11 16 25 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 26 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 27 H 0.14 0.68 8.06 -52.48 -0.42 0.26 16 28 H 0.14 1.01 8.06 -52.48 -0.42 0.59 16 29 H 0.44 5.56 7.99 -182.60 -1.46 4.10 16 30 H 0.43 5.46 7.95 -182.60 -1.45 4.01 16 31 H 0.10 1.69 8.14 -51.92 -0.42 1.27 16 32 H 0.10 1.69 8.14 -51.92 -0.42 1.27 16 33 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 313.31 15.07 4.72 4.72 Total: -1.00 -33.79 313.31 -8.54 -42.32 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -5.83 Total: 3.75 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: -1.11 Total: -2.10 kcal Atomic # 7 Polarization: -47.51 SS G_CDS: 1.03 Total: -46.49 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: -0.11 Total: -14.67 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: -1.34 SS G_CDS: -2.21 Total: -3.56 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -33.79 -8.54 -42.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272887955.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.092 kcal (2) G-P(sol) polarization free energy of solvation -33.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds