Wall clock time and date at job start Tue Mar 31 2020 05:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35675 * 116.99893 * 2 1 4 4 C 1.38782 * 119.63563 * 179.97438 * 3 2 1 5 5 C 1.38590 * 119.27138 * 179.97438 * 4 3 2 6 6 C 1.38495 * 118.57026 * 0.02562 * 5 4 3 7 7 C 1.38982 * 119.22122 * 359.97438 * 6 5 4 8 8 N 1.39006 * 119.66867 * 179.97438 * 7 6 5 9 9 N 1.40095 * 119.99721 * 180.02562 * 8 7 6 10 10 C 1.34775 * 119.99750 * 180.02562 * 9 8 7 11 11 O 1.21281 * 120.00166 * 359.97438 * 10 9 8 12 12 C 1.50707 * 119.99910 * 180.02562 * 10 9 8 13 13 S 1.81005 * 109.46805 * 180.02562 * 12 10 9 14 14 C 1.76204 * 99.99496 * 179.97438 * 13 12 10 15 15 H 1.07998 * 120.00560 * 0.02562 * 14 13 12 16 16 C 1.38800 * 119.99433 * 179.97438 * 14 13 12 17 17 N 1.31630 * 120.00477 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99533 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47304 * 59.99949 * 18 16 14 20 20 H 1.48507 * 109.46955 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47199 * 299.99590 * 18 16 14 22 22 N 1.32318 * 119.63905 * 359.72765 * 3 2 1 23 23 H 1.09006 * 109.46808 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47352 * 299.99708 * 1 2 3 25 25 H 1.08999 * 109.47144 * 59.99732 * 1 2 3 26 26 H 1.08000 * 120.36472 * 359.96291 * 4 3 2 27 27 H 1.08004 * 120.71679 * 180.02562 * 5 4 3 28 28 H 1.08006 * 120.39050 * 179.97438 * 6 5 4 29 29 H 0.96996 * 119.99579 * 0.02562 * 8 7 6 30 30 H 0.96997 * 120.00115 * 0.02562 * 9 8 7 31 31 H 1.08996 * 109.46914 * 299.99362 * 12 10 9 32 32 H 1.08992 * 109.47144 * 59.99800 * 12 10 9 33 33 H 0.96996 * 119.99685 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4313 1.2727 0.0005 5 6 4.0526 2.5116 0.0000 6 6 3.2623 3.6489 -0.0005 7 6 1.8790 3.5139 -0.0010 8 7 1.0769 4.6492 -0.0010 9 7 -0.3182 4.5211 -0.0010 10 6 -1.0959 5.6218 -0.0015 11 8 -0.5880 6.7232 -0.0015 12 6 -2.5967 5.4841 -0.0009 13 16 -3.3533 7.1284 -0.0026 14 6 -5.0576 6.6808 -0.0023 15 1 -5.3424 5.6390 -0.0009 16 6 -6.0341 7.6672 -0.0028 17 7 -5.6871 8.9369 -0.0030 18 14 -7.8409 7.1926 -0.0018 19 1 -8.1414 6.3908 1.2114 20 1 -8.6753 8.4211 -0.0020 21 1 -8.1422 6.3889 -1.2135 22 7 1.3173 2.3140 -0.0055 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 4.0195 0.3670 0.0016 27 1 5.1299 2.5884 0.0000 28 1 3.7156 4.6292 -0.0005 29 1 1.4832 5.5300 -0.0010 30 1 -0.7243 3.6403 -0.0006 31 1 -2.9118 4.9387 -0.8904 32 1 -2.9112 4.9399 0.8895 33 1 -6.3696 9.6261 -0.0030 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272887955.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:29 Heat of formation + Delta-G solvation = -20.198246 kcal Electronic energy + Delta-G solvation = -18746.479836 eV Core-core repulsion = 15513.597536 eV Total energy + Delta-G solvation = -3232.882300 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.078 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.69837 -40.72536 -39.06329 -36.84945 -34.59291 -33.57682 -33.05163 -31.08537 -29.33177 -27.78228 -27.51703 -24.27561 -23.77677 -22.26005 -20.26476 -19.46603 -19.12174 -18.12142 -17.04543 -17.04197 -16.88012 -16.84744 -16.64955 -16.37289 -16.04305 -15.08509 -15.03638 -14.91601 -14.53726 -14.14374 -13.87285 -13.18451 -13.12351 -12.99364 -12.86246 -12.66021 -12.64259 -11.93420 -11.78777 -11.29308 -11.13362 -10.88075 -10.78286 -10.31877 -10.00574 -8.69461 -8.46540 -8.35520 -6.13887 0.32716 0.41550 0.67830 1.34638 1.43953 1.45310 1.50896 1.64272 2.13609 2.26007 2.71676 2.85696 2.99083 3.22378 3.61784 3.92265 4.09289 4.22681 4.24983 4.40835 4.43885 4.45190 4.47141 4.58968 4.79329 5.02221 5.33681 5.36732 5.41866 5.67348 5.91602 6.19182 6.32169 6.42031 6.90982 7.06075 7.23872 8.73364 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.029154 B = 0.003175 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.191604 B = 8818.019080 C = 9757.764635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.316 6.316 3 C 0.345 3.655 4 C -0.251 4.251 5 C 0.013 3.987 6 C -0.265 4.265 7 C 0.422 3.578 8 N -0.520 5.520 9 N -0.506 5.506 10 C 0.535 3.465 11 O -0.560 6.560 12 C -0.121 4.121 13 S -0.137 6.137 14 C -0.550 4.550 15 H 0.085 0.915 16 C 0.015 3.985 17 N -0.911 5.911 18 Si 0.998 3.002 19 H -0.262 1.262 20 H -0.280 1.280 21 H -0.262 1.262 22 N -0.618 5.618 23 H 0.121 0.879 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.158 0.842 27 H 0.182 0.818 28 H 0.158 0.842 29 H 0.444 0.556 30 H 0.437 0.563 31 H 0.116 0.884 32 H 0.116 0.884 33 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.127 -18.780 0.022 25.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.223 6.223 3 C 0.167 3.833 4 C -0.274 4.274 5 C -0.012 4.012 6 C -0.291 4.291 7 C 0.187 3.813 8 N -0.250 5.250 9 N -0.254 5.254 10 C 0.321 3.679 11 O -0.437 6.437 12 C -0.273 4.273 13 S 0.090 5.910 14 C -0.697 4.697 15 H 0.103 0.897 16 C -0.190 4.190 17 N -0.547 5.547 18 Si 0.820 3.180 19 H -0.187 1.187 20 H -0.205 1.205 21 H -0.186 1.186 22 N -0.353 5.353 23 H 0.139 0.861 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.175 0.825 27 H 0.200 0.800 28 H 0.176 0.824 29 H 0.289 0.711 30 H 0.280 0.720 31 H 0.134 0.866 32 H 0.134 0.866 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 16.927 -17.152 0.015 24.098 hybrid contribution -1.251 -0.912 0.003 1.548 sum 15.676 -18.064 0.018 23.917 Atomic orbital electron populations 1.23013 0.76281 1.04559 1.02037 1.86248 1.23968 1.24417 1.87685 1.19758 0.90003 0.83247 0.90331 1.21131 0.90933 1.00979 1.14375 1.21529 1.01816 0.89187 0.88716 1.21357 0.90068 1.02462 1.15249 1.18052 0.87938 0.84064 0.91210 1.43398 0.92760 1.07314 1.81535 1.44617 0.94818 1.10130 1.75798 1.20252 0.88432 0.83241 0.76002 1.90706 1.75246 1.26865 1.50878 1.23244 0.91977 1.04612 1.07489 1.85579 1.03486 1.04837 1.97085 1.23200 0.91221 0.96215 1.59098 0.89660 1.26112 1.05003 0.94226 0.93669 1.70164 1.36040 1.00666 1.47860 0.85009 0.75641 0.77869 0.79517 1.18656 1.20475 1.18641 1.66335 1.41991 0.98076 1.28920 0.86099 0.92746 0.92753 0.82479 0.80036 0.82445 0.71124 0.71987 0.86611 0.86603 0.91936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.57 10.38 113.37 1.18 1.75 16 2 O -0.32 -6.43 10.47 -89.92 -0.94 -7.37 16 3 C 0.35 7.41 7.48 84.75 0.63 8.05 16 4 C -0.25 -4.03 10.04 22.48 0.23 -3.81 16 5 C 0.01 0.16 10.16 22.42 0.23 0.39 16 6 C -0.27 -4.37 9.93 22.51 0.22 -4.15 16 7 C 0.42 9.58 7.59 133.00 1.01 10.59 16 8 N -0.52 -13.30 6.42 -55.48 -0.36 -13.65 16 9 N -0.51 -14.38 6.29 -173.53 -1.09 -15.47 16 10 C 0.53 19.54 7.96 87.66 0.70 20.24 16 11 O -0.56 -24.85 15.70 -3.03 -0.05 -24.90 16 12 C -0.12 -4.65 6.16 71.24 0.44 -4.21 16 13 S -0.14 -7.40 20.57 -56.49 -1.16 -8.56 16 14 C -0.55 -30.76 9.50 67.95 0.65 -30.12 16 15 H 0.09 4.40 7.80 -2.91 -0.02 4.37 16 16 C 0.01 0.83 5.49 84.86 0.47 1.30 16 17 N -0.91 -55.25 13.22 21.65 0.29 -54.96 16 18 Si 1.00 42.93 29.55 68.60 2.03 44.96 16 19 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 20 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 21 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 22 N -0.62 -14.62 8.22 -306.33 -2.52 -17.13 16 23 H 0.12 1.24 8.14 -2.38 -0.02 1.23 16 24 H 0.05 0.91 8.11 -2.39 -0.02 0.89 16 25 H 0.05 0.91 8.10 -2.39 -0.02 0.90 16 26 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16 27 H 0.18 0.84 8.06 -2.91 -0.02 0.82 16 28 H 0.16 1.88 8.06 -2.91 -0.02 1.86 16 29 H 0.44 11.05 7.99 -213.33 -1.71 9.34 16 30 H 0.44 10.77 7.95 -213.33 -1.70 9.07 16 31 H 0.12 3.98 8.14 -2.40 -0.02 3.96 16 32 H 0.12 3.98 8.14 -2.40 -0.02 3.96 16 33 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -74.99 313.31 -0.30 -75.28 By element: Atomic # 1 Polarization: 24.01 SS G_CDS: -2.24 Total: 21.77 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: 5.75 Total: 0.04 kcal Atomic # 7 Polarization: -97.54 SS G_CDS: -3.68 Total: -101.22 kcal Atomic # 8 Polarization: -31.28 SS G_CDS: -0.99 Total: -32.26 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Atomic # 16 Polarization: -7.40 SS G_CDS: -1.16 Total: -8.56 kcal Total: -74.99 -0.30 -75.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272887955.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.085 kcal (2) G-P(sol) polarization free energy of solvation -74.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds