Wall clock time and date at job start Tue Mar 31 2020 06:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86794 * 120.00232 * 2 1 4 4 H 1.48505 * 109.47158 * 270.00042 * 3 2 1 5 5 H 1.48502 * 109.47383 * 29.99778 * 3 2 1 6 6 H 1.48498 * 109.47413 * 150.00139 * 3 2 1 7 7 C 1.37882 * 119.99566 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99674 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99964 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46780 * 179.97438 * 9 7 2 11 11 N 1.46506 * 109.46814 * 179.97438 * 10 9 7 12 12 C 1.34777 * 119.99439 * 179.97438 * 11 10 9 13 13 O 1.21587 * 120.00751 * 0.02562 * 12 11 10 14 14 N 1.34784 * 119.99540 * 180.02562 * 12 11 10 15 15 C 1.46504 * 119.99528 * 179.97438 * 14 12 11 16 16 C 1.50705 * 109.46496 * 180.02562 * 15 14 12 17 17 C 1.38705 * 120.40098 * 90.00564 * 16 15 14 18 18 C 1.38565 * 118.43594 * 180.02562 * 17 16 15 19 19 C 1.38398 * 119.14885 * 359.97438 * 18 17 16 20 20 Cl 1.73605 * 119.63252 * 180.02562 * 19 18 17 21 21 N 1.31943 * 120.73083 * 359.97438 * 19 18 17 22 22 C 1.31905 * 121.70686 * 0.04743 * 21 19 18 23 23 H 0.97006 * 119.99501 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47774 * 59.99665 * 9 7 2 25 25 H 1.08994 * 109.47040 * 299.99325 * 9 7 2 26 26 H 1.08996 * 109.47334 * 59.99865 * 10 9 7 27 27 H 1.08998 * 109.47318 * 299.99588 * 10 9 7 28 28 H 0.96995 * 120.00388 * 0.02562 * 11 10 9 29 29 H 0.96995 * 120.00286 * 0.02562 * 14 12 11 30 30 H 1.09003 * 109.46585 * 60.00717 * 15 14 12 31 31 H 1.08993 * 109.47576 * 299.99771 * 15 14 12 32 32 H 1.08001 * 120.78816 * 359.97438 * 17 16 15 33 33 H 1.08000 * 120.42478 * 179.72686 * 18 17 16 34 34 H 1.08007 * 119.60917 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0027 11 7 1.5125 -4.9308 -0.0033 12 6 2.1864 -6.0980 -0.0047 13 8 3.4023 -6.0982 -0.0051 14 7 1.5124 -7.2652 -0.0057 15 6 2.2450 -8.5340 -0.0079 16 6 1.2656 -9.6794 -0.0092 17 6 0.8091 -10.2111 -1.2062 18 6 -0.0913 -11.2634 -1.1600 19 6 -0.5019 -11.7457 0.0705 20 17 -1.6291 -13.0640 0.1431 21 7 -0.0453 -11.2153 1.1891 22 6 0.8120 -10.2129 1.1816 23 1 -0.4850 0.8401 0.0004 24 1 0.6245 -2.5563 -0.8919 25 1 0.6241 -2.5575 0.8880 26 1 2.8718 -3.6052 0.8872 27 1 2.8718 -3.6037 -0.8927 28 1 0.5426 -4.9308 -0.0033 29 1 0.5425 -7.2652 -0.0058 30 1 2.8722 -8.5928 0.8817 31 1 2.8710 -8.5907 -0.8983 32 1 1.1468 -9.8139 -2.1521 33 1 -0.4709 -11.6988 -2.0725 34 1 1.1634 -9.8042 2.1176 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273152139.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:09 Heat of formation + Delta-G solvation = -13.500320 kcal Electronic energy + Delta-G solvation = -18365.403296 eV Core-core repulsion = 15130.767733 eV Total energy + Delta-G solvation = -3234.635563 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.85437 -39.53111 -37.13750 -35.55578 -34.63666 -33.05207 -32.78861 -31.68188 -29.50369 -26.63572 -24.52807 -24.29511 -22.48904 -21.08877 -20.62882 -18.32406 -17.83846 -17.26782 -16.46674 -16.14640 -15.39897 -15.28663 -14.86124 -14.53710 -14.37770 -13.86375 -13.74657 -13.68961 -13.47692 -12.70053 -12.30658 -12.18939 -12.07211 -11.73253 -11.20499 -11.04334 -10.64284 -10.48715 -10.34156 -10.10745 -10.04260 -9.61510 -9.39426 -9.25253 -9.14782 -8.50691 -8.29374 -6.10323 -4.12985 0.31929 0.65639 1.35941 2.85593 3.28973 3.29752 3.35474 3.40155 3.51245 3.95766 4.16554 4.36219 4.38253 4.39618 4.54536 4.66850 5.03206 5.26903 5.27269 5.35364 5.46411 5.72153 5.96645 6.25602 6.37337 6.43250 6.75193 6.95032 7.13827 7.21451 7.54703 7.61556 7.88749 8.23340 8.36881 8.89159 8.94726 9.51847 11.01336 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.039392 B = 0.002322 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.639250 B =12057.966843 C =12464.175687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.521 4.521 8 H 0.060 0.940 9 C 0.013 3.987 10 C 0.140 3.860 11 N -0.737 5.737 12 C 0.699 3.301 13 O -0.596 6.596 14 N -0.752 5.752 15 C 0.186 3.814 16 C -0.153 4.153 17 C -0.042 4.042 18 C -0.156 4.156 19 C 0.178 3.822 20 Cl -0.031 7.031 21 N -0.479 5.479 22 C 0.140 3.860 23 H 0.262 0.738 24 H 0.022 0.978 25 H 0.022 0.978 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.394 0.606 29 H 0.395 0.605 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.150 0.850 33 H 0.148 0.852 34 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.601 -24.749 -1.976 24.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.560 4.560 8 H 0.078 0.922 9 C -0.025 4.025 10 C 0.017 3.983 11 N -0.390 5.390 12 C 0.399 3.601 13 O -0.475 6.475 14 N -0.410 5.410 15 C 0.061 3.939 16 C -0.155 4.155 17 C -0.068 4.068 18 C -0.177 4.177 19 C 0.013 3.987 20 Cl -0.003 7.003 21 N -0.189 5.189 22 C -0.018 4.018 23 H 0.071 0.929 24 H 0.040 0.960 25 H 0.041 0.959 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.227 0.773 29 H 0.229 0.771 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.167 0.833 33 H 0.166 0.834 34 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -1.982 -25.046 -1.164 25.151 hybrid contribution -0.454 1.070 -0.771 1.395 sum -2.435 -23.976 -1.935 24.177 Atomic orbital electron populations 1.69960 1.06099 1.26873 1.50422 1.25004 0.94902 0.99437 0.95006 0.86503 0.79842 0.82963 0.78193 1.20566 1.21185 1.19706 1.21050 0.93277 0.90339 1.51286 0.92193 1.19327 0.94256 0.91086 0.97816 1.21614 0.95646 0.80321 1.00715 1.45547 1.09909 1.05290 1.78291 1.16035 0.85604 0.80387 0.78054 1.90903 1.11689 1.86590 1.58327 1.45151 1.09480 1.04181 1.82162 1.19849 0.91423 0.78778 1.03805 1.21092 1.00567 0.99562 0.94316 1.21635 0.93121 0.93072 0.99017 1.21888 0.99546 0.98416 0.97812 1.21762 0.94115 0.92496 0.90288 1.98421 1.58565 1.44608 1.98676 1.67092 1.11093 1.10555 1.30185 1.22738 0.90741 0.89974 0.98347 0.92852 0.95996 0.95949 0.92696 0.92719 0.77339 0.77141 0.90186 0.90333 0.83274 0.83425 0.81352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.99 13.29 55.43 0.74 -25.25 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.52 -14.33 9.11 -34.44 -0.31 -14.64 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 10 C 0.14 2.93 5.61 -4.04 -0.02 2.91 16 11 N -0.74 -12.50 5.56 -65.22 -0.36 -12.86 16 12 C 0.70 11.46 8.57 -86.91 -0.74 10.71 16 13 O -0.60 -12.17 16.34 5.29 0.09 -12.08 16 14 N -0.75 -8.45 5.55 -66.41 -0.37 -8.82 16 15 C 0.19 1.72 5.82 -5.19 -0.03 1.69 16 16 C -0.15 -1.16 5.26 -104.48 -0.55 -1.71 16 17 C -0.04 -0.28 9.86 -39.29 -0.39 -0.66 16 18 C -0.16 -1.06 9.88 -39.40 -0.39 -1.45 16 19 C 0.18 1.58 7.27 -17.44 -0.13 1.46 16 20 Cl -0.03 -0.26 29.11 -51.86 -1.51 -1.77 16 21 N -0.48 -4.79 10.34 -10.36 -0.11 -4.90 16 22 C 0.14 1.16 10.86 -17.55 -0.19 0.97 16 23 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 24 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 28 H 0.39 5.72 8.49 -40.82 -0.35 5.38 16 29 H 0.40 3.59 8.48 -40.82 -0.35 3.24 16 30 H 0.08 0.77 8.09 -51.93 -0.42 0.35 16 31 H 0.08 0.75 8.09 -51.93 -0.42 0.33 16 32 H 0.15 0.71 8.06 -52.49 -0.42 0.29 16 33 H 0.15 0.68 8.06 -52.49 -0.42 0.26 16 34 H 0.17 1.13 8.06 -52.48 -0.42 0.70 16 LS Contribution 319.79 15.07 4.82 4.82 Total: -1.00 -32.85 319.79 -8.76 -41.60 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -4.03 Total: 2.05 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: -2.99 Total: 0.97 kcal Atomic # 7 Polarization: -51.73 SS G_CDS: -0.10 Total: -51.83 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: 0.09 Total: -12.08 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 17 Polarization: -0.26 SS G_CDS: -1.51 Total: -1.77 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.85 -8.76 -41.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273152139.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.104 kcal (2) G-P(sol) polarization free energy of solvation -32.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds