Wall clock time and date at job start Tue Mar 31 2020 06:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86794 * 120.00232 * 2 1 4 4 H 1.48505 * 109.47158 * 270.00042 * 3 2 1 5 5 H 1.48502 * 109.47383 * 29.99778 * 3 2 1 6 6 H 1.48498 * 109.47413 * 150.00139 * 3 2 1 7 7 C 1.37882 * 119.99566 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99674 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99964 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46780 * 179.97438 * 9 7 2 11 11 N 1.46506 * 109.46814 * 179.97438 * 10 9 7 12 12 C 1.34777 * 119.99439 * 179.97438 * 11 10 9 13 13 O 1.21587 * 120.00751 * 0.02562 * 12 11 10 14 14 N 1.34784 * 119.99540 * 180.02562 * 12 11 10 15 15 C 1.46504 * 119.99528 * 179.97438 * 14 12 11 16 16 C 1.50705 * 109.46496 * 180.02562 * 15 14 12 17 17 C 1.38705 * 120.40098 * 90.00564 * 16 15 14 18 18 C 1.38565 * 118.43594 * 180.02562 * 17 16 15 19 19 C 1.38398 * 119.14885 * 359.97438 * 18 17 16 20 20 Cl 1.73605 * 119.63252 * 180.02562 * 19 18 17 21 21 N 1.31943 * 120.73083 * 359.97438 * 19 18 17 22 22 C 1.31905 * 121.70686 * 0.04743 * 21 19 18 23 23 H 0.97006 * 119.99501 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47774 * 59.99665 * 9 7 2 25 25 H 1.08994 * 109.47040 * 299.99325 * 9 7 2 26 26 H 1.08996 * 109.47334 * 59.99865 * 10 9 7 27 27 H 1.08998 * 109.47318 * 299.99588 * 10 9 7 28 28 H 0.96995 * 120.00388 * 0.02562 * 11 10 9 29 29 H 0.96995 * 120.00286 * 0.02562 * 14 12 11 30 30 H 1.09003 * 109.46585 * 60.00717 * 15 14 12 31 31 H 1.08993 * 109.47576 * 299.99771 * 15 14 12 32 32 H 1.08001 * 120.78816 * 359.97438 * 17 16 15 33 33 H 1.08000 * 120.42478 * 179.72686 * 18 17 16 34 34 H 1.08007 * 119.60917 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0027 11 7 1.5125 -4.9308 -0.0033 12 6 2.1864 -6.0980 -0.0047 13 8 3.4023 -6.0982 -0.0051 14 7 1.5124 -7.2652 -0.0057 15 6 2.2450 -8.5340 -0.0079 16 6 1.2656 -9.6794 -0.0092 17 6 0.8091 -10.2111 -1.2062 18 6 -0.0913 -11.2634 -1.1600 19 6 -0.5019 -11.7457 0.0705 20 17 -1.6291 -13.0640 0.1431 21 7 -0.0453 -11.2153 1.1891 22 6 0.8120 -10.2129 1.1816 23 1 -0.4850 0.8401 0.0004 24 1 0.6245 -2.5563 -0.8919 25 1 0.6241 -2.5575 0.8880 26 1 2.8718 -3.6052 0.8872 27 1 2.8718 -3.6037 -0.8927 28 1 0.5426 -4.9308 -0.0033 29 1 0.5425 -7.2652 -0.0058 30 1 2.8722 -8.5928 0.8817 31 1 2.8710 -8.5907 -0.8983 32 1 1.1468 -9.8139 -2.1521 33 1 -0.4709 -11.6988 -2.0725 34 1 1.1634 -9.8042 2.1176 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273152139.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:09 Heat of formation + Delta-G solvation = -36.746058 kcal Electronic energy + Delta-G solvation = -18366.411307 eV Core-core repulsion = 15130.767733 eV Total energy + Delta-G solvation = -3235.643574 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.53902 -40.77549 -37.78081 -36.82410 -36.01831 -34.80209 -33.64550 -32.56418 -31.19590 -27.67710 -26.25769 -24.87530 -23.33425 -22.76223 -21.95764 -19.56542 -18.48295 -18.40498 -17.91117 -17.35543 -16.63670 -16.49212 -16.12906 -15.64805 -15.25873 -15.17272 -15.11415 -14.58078 -14.25633 -14.24897 -13.85351 -13.19133 -12.92797 -12.85851 -12.71180 -12.50693 -12.36771 -12.20377 -11.67162 -11.50394 -11.26875 -11.00348 -10.72541 -10.58964 -10.33461 -10.02535 -9.70807 -8.22657 -6.32550 -0.30427 0.09828 0.74663 1.43443 1.43794 1.55201 1.80160 2.19201 2.42184 2.57043 3.12436 3.36504 3.46196 3.53058 3.78003 3.86340 3.94562 4.48532 4.50970 4.56151 4.65821 4.71052 4.82421 4.90321 5.11146 5.33557 5.38822 5.45263 5.54082 5.62317 5.80986 6.03864 6.19214 6.59657 6.81174 7.12769 7.36811 7.61192 8.89225 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.039392 B = 0.002322 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.639250 B =12057.966843 C =12464.175687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.006 3.994 3 Si 0.965 3.035 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.545 4.545 8 H 0.060 0.940 9 C 0.023 3.977 10 C 0.161 3.839 11 N -0.734 5.734 12 C 0.700 3.300 13 O -0.637 6.637 14 N -0.731 5.731 15 C 0.189 3.811 16 C -0.148 4.148 17 C -0.035 4.035 18 C -0.150 4.150 19 C 0.162 3.838 20 Cl -0.034 7.034 21 N -0.507 5.507 22 C 0.134 3.866 23 H 0.265 0.735 24 H 0.009 0.991 25 H 0.008 0.992 26 H 0.044 0.956 27 H 0.045 0.955 28 H 0.406 0.594 29 H 0.409 0.591 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.172 0.828 33 H 0.172 0.828 34 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.426 -25.154 -2.673 25.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.193 4.193 3 Si 0.789 3.211 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.190 1.190 7 C -0.583 4.583 8 H 0.078 0.922 9 C -0.015 4.015 10 C 0.036 3.964 11 N -0.388 5.388 12 C 0.400 3.600 13 O -0.519 6.519 14 N -0.388 5.388 15 C 0.065 3.935 16 C -0.151 4.151 17 C -0.061 4.061 18 C -0.170 4.170 19 C -0.002 4.002 20 Cl -0.006 7.006 21 N -0.218 5.218 22 C -0.023 4.023 23 H 0.074 0.926 24 H 0.027 0.973 25 H 0.026 0.974 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.242 0.758 29 H 0.245 0.755 30 H 0.096 0.904 31 H 0.100 0.900 32 H 0.190 0.810 33 H 0.189 0.811 34 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -1.853 -25.506 -1.862 25.641 hybrid contribution -0.543 1.103 -0.559 1.351 sum -2.396 -24.403 -2.421 24.640 Atomic orbital electron populations 1.70063 1.07536 1.27944 1.51161 1.25873 0.95793 1.03099 0.94507 0.85450 0.78638 0.78484 0.78508 1.19764 1.20652 1.19029 1.21481 0.93649 0.91905 1.51299 0.92202 1.19131 0.94276 0.91724 0.96321 1.21068 0.94549 0.81053 0.99713 1.45228 1.10402 1.04490 1.78712 1.16096 0.85079 0.81109 0.77689 1.90879 1.13587 1.87259 1.60126 1.44977 1.10168 1.03320 1.80302 1.19910 0.91668 0.78041 1.03921 1.20874 1.00456 0.99088 0.94673 1.21913 0.92247 0.92464 0.99498 1.22138 0.98961 0.98031 0.97910 1.22030 0.94480 0.92788 0.90908 1.98416 1.58685 1.44752 1.98700 1.67059 1.12105 1.11487 1.31152 1.22918 0.90517 0.89750 0.99149 0.92597 0.97312 0.97376 0.93779 0.93656 0.75839 0.75528 0.90366 0.90044 0.81010 0.81071 0.80437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.99 13.29 21.45 0.28 -53.70 16 2 C 0.01 0.33 5.46 84.66 0.46 0.79 16 3 Si 0.96 43.26 29.54 68.60 2.03 45.29 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 5 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 6 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 7 C -0.54 -30.10 9.11 25.60 0.23 -29.87 16 8 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 9 C 0.02 1.14 5.09 29.85 0.15 1.29 16 10 C 0.16 6.76 5.61 86.38 0.48 7.25 16 11 N -0.73 -24.37 5.56 -478.52 -2.66 -27.03 16 12 C 0.70 22.17 8.57 179.05 1.53 23.71 16 13 O -0.64 -25.60 16.34 -3.99 -0.07 -25.67 16 14 N -0.73 -15.06 5.55 -482.28 -2.68 -17.74 16 15 C 0.19 3.13 5.82 85.63 0.50 3.63 16 16 C -0.15 -1.94 5.26 -19.77 -0.10 -2.05 16 17 C -0.03 -0.36 9.86 22.46 0.22 -0.14 16 18 C -0.15 -1.69 9.88 22.39 0.22 -1.46 16 19 C 0.16 2.66 7.27 84.71 0.62 3.28 16 20 Cl -0.03 -0.54 29.11 -2.72 -0.08 -0.61 16 21 N -0.51 -9.64 10.34 -186.69 -1.93 -11.57 16 22 C 0.13 2.05 10.86 84.66 0.92 2.96 16 23 H 0.27 14.52 8.31 -92.70 -0.77 13.75 16 24 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 25 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 26 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.41 11.40 8.49 -92.71 -0.79 10.61 16 29 H 0.41 6.47 8.48 -92.71 -0.79 5.69 16 30 H 0.08 1.39 8.09 -2.39 -0.02 1.37 16 31 H 0.08 1.38 8.09 -2.39 -0.02 1.36 16 32 H 0.17 1.01 8.06 -2.91 -0.02 0.98 16 33 H 0.17 1.05 8.06 -2.91 -0.02 1.03 16 34 H 0.18 2.19 8.06 -2.91 -0.02 2.17 16 Total: -1.00 -70.02 319.79 -0.30 -70.32 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -0.43 Total: 11.32 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: 5.24 Total: 9.40 kcal Atomic # 7 Polarization: -103.05 SS G_CDS: -6.98 Total: -110.04 kcal Atomic # 8 Polarization: -25.60 SS G_CDS: -0.07 Total: -25.67 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -0.08 Total: -0.61 kcal Total: -70.02 -0.30 -70.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273152139.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.569 kcal (2) G-P(sol) polarization free energy of solvation -70.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds