Wall clock time and date at job start Tue Mar 31 2020 05:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42896 * 114.00002 * 2 1 4 4 H 1.08997 * 109.47390 * 328.29388 * 3 2 1 5 5 C 1.53007 * 109.47030 * 208.29985 * 3 2 1 6 6 N 1.46497 * 109.47186 * 65.28993 * 5 3 2 7 7 C 1.34777 * 119.99760 * 175.45838 * 6 5 3 8 8 O 1.21687 * 119.99995 * 359.97438 * 7 6 5 9 9 C 1.46375 * 119.99685 * 180.02562 * 7 6 5 10 10 H 1.07996 * 120.00155 * 0.02562 * 9 7 6 11 11 C 1.40054 * 119.99762 * 179.97438 * 9 7 6 12 12 N 1.30668 * 120.00122 * 0.02562 * 11 9 7 13 13 Si 1.86799 * 119.99834 * 179.97438 * 11 9 7 14 14 H 1.48505 * 109.46903 * 90.00390 * 13 11 9 15 15 H 1.48500 * 109.47238 * 210.00051 * 13 11 9 16 16 H 1.48497 * 109.47307 * 330.00617 * 13 11 9 17 17 C 1.50695 * 109.47218 * 88.30110 * 3 2 1 18 18 C 1.38248 * 119.98830 * 219.99799 * 17 3 2 19 19 C 1.38213 * 120.01231 * 179.97438 * 18 17 3 20 20 C 1.38347 * 119.99146 * 0.02562 * 19 18 17 21 21 Cl 1.73593 * 120.01803 * 180.02562 * 20 19 18 22 22 C 1.38357 * 119.97176 * 0.27524 * 20 19 18 23 23 C 1.38217 * 119.98327 * 359.40337 * 22 20 19 24 24 H 1.08992 * 109.47374 * 184.67807 * 1 2 3 25 25 H 1.09001 * 109.46403 * 304.67501 * 1 2 3 26 26 H 1.08996 * 109.46912 * 64.66808 * 1 2 3 27 27 H 1.08997 * 109.47090 * 185.29460 * 5 3 2 28 28 H 1.09008 * 109.46870 * 305.29128 * 5 3 2 29 29 H 0.96999 * 119.99972 * 355.45516 * 6 5 3 30 30 H 0.97001 * 120.00687 * 179.97438 * 12 11 9 31 31 H 1.08000 * 119.99025 * 359.97438 * 18 17 3 32 32 H 1.08001 * 119.99961 * 180.02562 * 19 18 17 33 33 H 1.07993 * 120.00894 * 179.72732 * 22 20 19 34 34 H 1.08004 * 119.99501 * 180.31974 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3594 1.9930 -0.5401 5 6 3.3781 1.2547 -0.6839 6 7 3.2046 0.9143 -2.0982 7 6 4.2697 0.9022 -2.9239 8 8 5.3754 1.1745 -2.4948 9 6 4.0962 0.5625 -4.3371 10 1 3.1148 0.3221 -4.7182 11 6 5.2030 0.5505 -5.1953 12 7 6.3904 0.8419 -4.7343 13 14 4.9818 0.1164 -6.9986 14 1 4.7065 1.3520 -7.7750 15 1 6.2208 -0.5234 -7.5094 16 1 3.8422 -0.8245 -7.1452 17 6 2.1761 1.7815 1.4201 18 6 1.9094 3.0990 1.7429 19 6 2.0608 3.5360 3.0453 20 6 2.4799 2.6549 4.0261 21 17 2.6697 3.2029 5.6623 22 6 2.7527 1.3379 3.7014 23 6 2.5945 0.9004 2.3998 24 1 -0.3634 -1.0241 0.0838 25 1 -0.3632 0.5847 0.8452 26 1 -0.3633 0.4397 -0.9288 27 1 3.8620 2.2279 -0.6011 28 1 3.9976 0.4986 -0.2015 29 1 2.3232 0.6975 -2.4402 30 1 7.1571 0.8332 -5.3286 31 1 1.5827 3.7869 0.9770 32 1 1.8520 4.5653 3.2973 33 1 3.0841 0.6507 4.4656 34 1 2.8024 -0.1289 2.1472 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274710170.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:55 Heat of formation + Delta-G solvation = -71.182745 kcal Electronic energy + Delta-G solvation = -19269.278435 eV Core-core repulsion = 15999.848823 eV Total energy + Delta-G solvation = -3269.429612 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.88703 -37.98356 -36.92615 -36.50269 -33.50493 -32.36381 -31.46569 -31.18931 -28.26762 -26.54159 -25.61942 -23.24098 -22.88574 -20.93663 -19.67736 -17.53843 -17.15913 -16.70168 -15.99715 -15.36691 -15.07661 -14.93564 -14.65831 -13.94645 -13.86135 -13.61180 -13.56824 -13.44379 -12.98990 -12.34834 -11.87801 -11.80719 -11.66230 -11.53108 -11.29205 -11.11650 -11.01731 -10.93937 -10.66084 -10.43808 -10.21425 -9.70377 -9.16546 -8.83649 -8.74731 -7.60295 -7.48743 -6.16657 -4.61861 0.96070 1.17192 1.96023 3.15286 3.22049 3.25657 3.45260 3.79868 4.11658 4.50339 4.61498 4.65796 4.75245 5.00072 5.19245 5.24415 5.26773 5.35773 5.44712 5.48063 5.56082 5.68244 5.80056 5.82566 6.05464 6.10055 6.31522 6.36558 6.47983 6.65518 7.23839 7.45307 7.94757 8.09674 8.34640 9.04443 9.55449 10.62127 10.80636 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.030431 B = 0.003303 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.904019 B = 8476.344877 C = 9032.529141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.369 6.369 3 C 0.119 3.881 4 H 0.075 0.925 5 C 0.144 3.856 6 N -0.763 5.763 7 C 0.555 3.445 8 O -0.582 6.582 9 C -0.545 4.545 10 H 0.067 0.933 11 C 0.087 3.913 12 N -0.768 5.768 13 Si 0.908 3.092 14 H -0.272 1.272 15 H -0.279 1.279 16 H -0.265 1.265 17 C -0.100 4.100 18 C -0.097 4.097 19 C -0.113 4.113 20 C -0.035 4.035 21 Cl -0.078 7.078 22 C -0.113 4.113 23 C -0.078 4.078 24 H 0.084 0.916 25 H 0.038 0.962 26 H 0.043 0.957 27 H 0.066 0.934 28 H 0.056 0.944 29 H 0.381 0.619 30 H 0.268 0.732 31 H 0.133 0.867 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.617 2.638 14.663 19.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.287 6.287 3 C 0.061 3.939 4 H 0.093 0.907 5 C 0.018 3.982 6 N -0.419 5.419 7 C 0.359 3.641 8 O -0.464 6.464 9 C -0.582 4.582 10 H 0.085 0.915 11 C -0.133 4.133 12 N -0.397 5.397 13 Si 0.733 3.267 14 H -0.198 1.198 15 H -0.205 1.205 16 H -0.189 1.189 17 C -0.101 4.101 18 C -0.115 4.115 19 C -0.132 4.132 20 C -0.061 4.061 21 Cl -0.049 7.049 22 C -0.132 4.132 23 C -0.096 4.096 24 H 0.103 0.897 25 H 0.056 0.944 26 H 0.062 0.938 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.213 0.787 30 H 0.079 0.921 31 H 0.151 0.849 32 H 0.150 0.850 33 H 0.151 0.849 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -11.449 2.742 15.100 19.146 hybrid contribution -0.726 0.003 -0.779 1.065 sum -12.175 2.744 14.321 18.996 Atomic orbital electron populations 1.22793 0.81470 1.02600 0.99885 1.88027 1.19308 1.26723 1.94680 1.21356 0.96634 0.85180 0.90714 0.90740 1.20918 0.92012 1.00831 0.84390 1.46044 1.11480 1.77442 1.06952 1.18217 0.82335 0.77313 0.86225 1.90602 1.24734 1.53588 1.77522 1.20869 0.94966 1.50032 0.92293 0.91453 1.25710 0.94623 0.92971 0.99947 1.70020 0.99173 1.34908 1.35601 0.86376 0.78448 0.79139 0.82787 1.19789 1.20476 1.18921 1.20513 0.99083 0.94010 0.96519 1.21036 0.99341 0.95349 0.95810 1.20986 1.00546 0.99567 0.92109 1.20955 1.04502 0.94872 0.85818 1.98361 1.96143 1.90059 1.20354 1.21080 1.00764 0.94010 0.97363 1.21037 0.96648 1.00615 0.91296 0.89707 0.94367 0.93818 0.91572 0.92575 0.78737 0.92129 0.84915 0.84956 0.84928 0.84331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.79 101.05 1.09 1.40 16 2 O -0.37 -5.29 9.59 -35.23 -0.34 -5.63 16 3 C 0.12 1.70 2.34 -27.88 -0.07 1.64 16 4 H 0.07 0.96 7.71 -51.93 -0.40 0.56 16 5 C 0.14 2.77 5.32 -4.04 -0.02 2.74 16 6 N -0.76 -17.17 5.50 -61.72 -0.34 -17.51 16 7 C 0.56 15.93 7.75 -12.99 -0.10 15.83 16 8 O -0.58 -19.03 15.02 5.20 0.08 -18.95 16 9 C -0.54 -15.46 9.54 -35.63 -0.34 -15.80 16 10 H 0.07 1.75 7.85 -52.49 -0.41 1.33 16 11 C 0.09 2.44 5.50 -17.37 -0.10 2.35 16 12 N -0.77 -23.20 11.83 55.55 0.66 -22.54 16 13 Si 0.91 20.17 29.56 -169.99 -5.02 15.15 16 14 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 15 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 16 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 17 C -0.10 -1.28 4.84 -104.62 -0.51 -1.79 16 18 C -0.10 -1.09 9.67 -39.59 -0.38 -1.48 16 19 C -0.11 -1.21 9.83 -39.55 -0.39 -1.60 16 20 C -0.03 -0.39 6.32 -39.50 -0.25 -0.64 16 21 Cl -0.08 -0.80 28.96 -51.86 -1.50 -2.30 16 22 C -0.11 -1.28 9.83 -39.55 -0.39 -1.67 16 23 C -0.08 -0.96 9.35 -39.59 -0.37 -1.34 16 24 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.04 0.36 8.07 -51.93 -0.42 -0.06 16 26 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 28 H 0.06 1.17 8.14 -51.92 -0.42 0.75 16 29 H 0.38 7.60 8.43 -40.82 -0.34 7.26 16 30 H 0.27 7.33 8.29 -40.82 -0.34 6.99 16 31 H 0.13 1.26 8.04 -52.49 -0.42 0.84 16 32 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 33 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 34 H 0.14 1.71 7.78 -52.48 -0.41 1.30 16 LS Contribution 317.70 15.07 4.79 4.79 Total: -1.00 -34.41 317.70 -7.58 -41.99 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -4.08 Total: 5.36 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: -1.82 Total: -0.35 kcal Atomic # 7 Polarization: -40.37 SS G_CDS: 0.32 Total: -40.05 kcal Atomic # 8 Polarization: -24.32 SS G_CDS: -0.26 Total: -24.58 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -1.50 Total: -2.30 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -34.41 -7.58 -41.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274710170.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.193 kcal (2) G-P(sol) polarization free energy of solvation -34.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds