Wall clock time and date at job start Tue Mar 31 2020 05:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.46967 * 2 1 4 4 C 1.36921 * 120.00467 * 84.25125 * 3 2 1 5 5 H 1.08007 * 119.99866 * 315.20509 * 4 3 2 6 6 C 1.38995 * 120.00251 * 135.48043 * 4 3 2 7 7 N 1.31401 * 120.00252 * 159.10780 * 6 4 3 8 8 Si 1.86804 * 120.00064 * 339.10332 * 6 4 3 9 9 H 1.48499 * 109.46679 * 95.46787 * 8 6 4 10 10 H 1.48496 * 109.47181 * 215.46812 * 8 6 4 11 11 H 1.48496 * 109.47076 * 335.46827 * 8 6 4 12 12 C 1.34784 * 119.99563 * 264.25240 * 3 2 1 13 13 O 1.21664 * 119.99719 * 179.97438 * 12 3 2 14 14 C 1.47136 * 120.00086 * 359.97438 * 12 3 2 15 15 C 1.40056 * 120.24275 * 270.00243 * 14 12 3 16 16 F 1.35100 * 120.06936 * 0.02562 * 15 14 12 17 17 C 1.38060 * 119.85799 * 180.02562 * 15 14 12 18 18 C 1.38534 * 120.34360 * 359.97438 * 17 15 14 19 19 C 1.38001 * 120.49392 * 359.97438 * 18 17 15 20 20 C 1.38958 * 120.13086 * 359.76736 * 19 18 17 21 21 S 1.76199 * 120.17628 * 180.25716 * 20 19 18 22 22 C 1.81409 * 102.99736 * 0.24927 * 21 20 19 23 23 H 1.09004 * 109.46542 * 186.35803 * 1 2 3 24 24 H 1.08998 * 109.46861 * 306.35309 * 1 2 3 25 25 H 1.08989 * 109.47291 * 66.35803 * 1 2 3 26 26 H 1.08993 * 109.47660 * 239.99746 * 2 1 3 27 27 H 1.09000 * 109.47207 * 119.99254 * 2 1 3 28 28 H 0.96995 * 120.00051 * 180.02562 * 7 6 4 29 29 H 1.07997 * 119.82638 * 180.02562 * 17 15 14 30 30 H 1.08000 * 119.75406 * 179.97438 * 18 17 15 31 31 H 1.07993 * 119.93568 * 179.97438 * 19 18 17 32 32 H 1.09000 * 109.47204 * 179.97438 * 22 21 20 33 33 H 1.08996 * 109.47246 * 300.00250 * 22 21 20 34 34 H 1.09005 * 109.46829 * 60.00309 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1345 2.0664 1.1798 5 1 1.3392 2.0243 1.9093 6 6 3.2735 2.8207 1.4361 7 7 3.2373 3.7819 2.3313 8 14 4.8559 2.4678 0.5082 9 1 4.9583 3.3791 -0.6599 10 1 6.0167 2.6848 1.4085 11 1 4.8505 1.0592 0.0382 12 6 2.3531 1.9776 -1.1614 13 8 2.7582 3.1248 -1.1615 14 6 2.2287 1.2412 -2.4292 15 6 3.3042 0.4873 -2.9155 16 9 4.4617 0.4329 -2.2209 17 6 3.1790 -0.2002 -4.1062 18 6 1.9945 -0.1488 -4.8228 19 6 0.9254 0.5887 -4.3564 20 6 1.0275 1.2840 -3.1577 21 16 -0.3391 2.2205 -2.5577 22 6 -1.6056 1.9543 -3.8289 23 1 -0.3632 -1.0214 0.1138 24 1 -0.3633 0.6092 0.8277 25 1 -0.3633 0.4121 -0.9413 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5137 0.8900 28 1 4.0320 4.3085 2.5099 29 1 4.0085 -0.7817 -4.4805 30 1 1.9071 -0.6899 -5.7533 31 1 0.0063 0.6228 -4.9225 32 1 -2.5118 2.4960 -3.5580 33 1 -1.2385 2.3168 -4.7891 34 1 -1.8276 0.8897 -3.9032 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281927587.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:33 Heat of formation + Delta-G solvation = -31.069300 kcal Electronic energy + Delta-G solvation = -21038.680668 eV Core-core repulsion = 17785.407002 eV Total energy + Delta-G solvation = -3253.273666 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.078 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.66969 -39.47680 -37.83774 -34.83089 -32.36966 -31.13323 -30.86023 -29.56680 -28.75017 -25.30596 -23.34645 -22.89767 -22.00352 -19.68619 -18.18357 -17.40308 -16.57956 -16.11115 -15.66774 -15.47942 -15.18654 -14.83103 -14.19119 -13.95984 -13.71327 -13.60963 -13.21113 -13.03234 -12.83841 -12.59153 -12.34569 -12.22198 -12.02928 -11.85394 -11.45535 -11.05447 -10.71488 -10.45621 -10.20913 -10.03144 -9.83835 -9.58688 -8.78411 -8.54906 -8.44457 -7.54893 -7.22795 -6.18459 -3.93463 1.05629 1.13723 1.53201 2.47281 3.30506 3.46533 3.58661 3.69840 3.77200 4.29719 4.46667 4.61043 4.76125 4.97887 4.98950 5.04534 5.12669 5.24045 5.34887 5.55457 5.57504 5.69968 5.94416 6.00560 6.03790 6.14939 6.19635 6.22178 6.36744 6.59152 6.82252 6.90969 7.87572 8.03495 8.79183 8.91925 9.45125 9.83207 10.87247 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.018058 B = 0.009115 C = 0.007324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.149901 B = 3071.165055 C = 3822.016357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.099 3.901 3 N -0.442 5.442 4 C -0.348 4.348 5 H 0.097 0.903 6 C 0.098 3.902 7 N -0.859 5.859 8 Si 0.889 3.111 9 H -0.258 1.258 10 H -0.303 1.303 11 H -0.265 1.265 12 C 0.487 3.513 13 O -0.529 6.529 14 C -0.110 4.110 15 C 0.134 3.866 16 F -0.125 7.125 17 C -0.165 4.165 18 C -0.071 4.071 19 C -0.150 4.150 20 C -0.042 4.042 21 S -0.049 6.049 22 C -0.166 4.166 23 H 0.049 0.951 24 H 0.063 0.937 25 H 0.066 0.934 26 H 0.051 0.949 27 H 0.073 0.927 28 H 0.272 0.728 29 H 0.138 0.862 30 H 0.134 0.866 31 H 0.131 0.869 32 H 0.108 0.892 33 H 0.082 0.918 34 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.023 -10.348 -14.444 19.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.024 4.024 3 N -0.162 5.162 4 C -0.473 4.473 5 H 0.114 0.886 6 C -0.112 4.112 7 N -0.493 5.493 8 Si 0.718 3.282 9 H -0.184 1.184 10 H -0.231 1.231 11 H -0.189 1.189 12 C 0.275 3.725 13 O -0.411 6.411 14 C -0.121 4.121 15 C 0.112 3.888 16 F -0.104 7.104 17 C -0.187 4.187 18 C -0.091 4.091 19 C -0.175 4.175 20 C -0.157 4.157 21 S 0.197 5.803 22 C -0.335 4.335 23 H 0.068 0.932 24 H 0.082 0.918 25 H 0.085 0.915 26 H 0.069 0.931 27 H 0.092 0.908 28 H 0.082 0.918 29 H 0.156 0.844 30 H 0.152 0.848 31 H 0.149 0.851 32 H 0.127 0.873 33 H 0.101 0.899 34 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.980 -8.880 -13.265 17.422 hybrid contribution 1.231 -0.971 -1.444 2.132 sum -5.748 -9.852 -14.709 18.613 Atomic orbital electron populations 1.22347 0.96417 1.00703 1.03722 1.21571 0.94631 0.85168 1.01061 1.43527 1.57541 1.10115 1.05061 1.18729 1.04591 1.29350 0.94653 0.88572 1.25278 0.98780 0.93068 0.94115 1.69766 1.29840 1.16158 1.33497 0.86715 0.81120 0.80200 0.80175 1.18362 1.23147 1.18913 1.17821 0.85250 0.86754 0.82714 1.90705 1.47866 1.17085 1.85402 1.20033 0.92552 1.00362 0.99126 1.17706 0.81991 0.97708 0.91420 1.91589 1.45867 1.94596 1.78301 1.21021 1.00031 1.02931 0.94685 1.20837 0.91732 0.97495 0.99077 1.21086 1.00250 1.00391 0.95741 1.21793 0.96685 1.00082 0.97101 1.86604 1.04674 1.60082 1.28970 1.23827 1.01652 1.05828 1.02166 0.93207 0.91838 0.91484 0.93066 0.90827 0.91795 0.84419 0.84782 0.85100 0.87309 0.89875 0.89818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.98 10.20 37.16 0.38 -2.60 16 2 C 0.10 2.01 6.02 -4.04 -0.02 1.99 16 3 N -0.44 -11.21 2.12 -116.13 -0.25 -11.45 16 4 C -0.35 -10.12 9.62 -15.00 -0.14 -10.26 16 5 H 0.10 2.88 8.06 -52.48 -0.42 2.46 16 6 C 0.10 2.98 4.79 -17.46 -0.08 2.90 16 7 N -0.86 -26.93 13.96 55.50 0.77 -26.16 16 8 Si 0.89 25.08 24.60 -169.99 -4.18 20.90 16 9 H -0.26 -7.73 6.48 56.52 0.37 -7.37 16 10 H -0.30 -8.26 7.11 56.52 0.40 -7.86 16 11 H -0.26 -7.16 6.00 56.52 0.34 -6.82 16 12 C 0.49 12.55 3.93 -12.65 -0.05 12.50 16 13 O -0.53 -15.97 13.11 5.22 0.07 -15.90 16 14 C -0.11 -2.30 3.85 -104.73 -0.40 -2.70 16 15 C 0.13 2.53 6.88 -38.97 -0.27 2.26 16 16 F -0.13 -2.68 15.25 2.25 0.03 -2.65 16 17 C -0.16 -2.28 10.00 -39.54 -0.40 -2.68 16 18 C -0.07 -0.82 10.02 -39.56 -0.40 -1.22 16 19 C -0.15 -1.91 9.36 -39.40 -0.37 -2.28 16 20 C -0.04 -0.72 5.90 -38.44 -0.23 -0.95 16 21 S -0.05 -0.81 19.21 -107.50 -2.07 -2.88 16 22 C -0.17 -1.63 9.15 101.05 0.92 -0.70 16 23 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 25 H 0.07 1.12 5.22 -51.93 -0.27 0.85 16 26 H 0.05 0.96 6.35 -51.93 -0.33 0.63 16 27 H 0.07 1.44 8.09 -51.93 -0.42 1.02 16 28 H 0.27 8.05 8.31 -40.82 -0.34 7.71 16 29 H 0.14 1.51 8.06 -52.49 -0.42 1.08 16 30 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 31 H 0.13 1.24 5.89 -52.49 -0.31 0.93 16 32 H 0.11 0.91 8.14 -51.92 -0.42 0.48 16 33 H 0.08 0.71 7.74 -51.93 -0.40 0.31 16 34 H 0.08 0.68 7.76 -51.92 -0.40 0.28 16 LS Contribution 295.53 15.07 4.45 4.45 Total: -1.00 -35.97 295.53 -6.12 -42.09 By element: Atomic # 1 Polarization: -0.77 SS G_CDS: -3.90 Total: -4.67 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: -1.06 Total: -3.74 kcal Atomic # 7 Polarization: -38.14 SS G_CDS: 0.53 Total: -37.61 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: 0.07 Total: -15.90 kcal Atomic # 9 Polarization: -2.68 SS G_CDS: 0.03 Total: -2.65 kcal Atomic # 14 Polarization: 25.08 SS G_CDS: -4.18 Total: 20.90 kcal Atomic # 16 Polarization: -0.81 SS G_CDS: -2.07 Total: -2.88 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -35.97 -6.12 -42.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281927587.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.021 kcal (2) G-P(sol) polarization free energy of solvation -35.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds