Wall clock time and date at job start Tue Mar 31 2020 06:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99776 * 2 1 4 4 H 1.48499 * 109.47195 * 240.00555 * 3 2 1 5 5 H 1.48502 * 109.47070 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47049 * 120.00374 * 3 2 1 7 7 C 1.37877 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99839 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00078 * 359.97438 * 7 2 1 10 10 C 1.52992 * 109.47176 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47192 * 179.97438 * 10 9 7 12 12 N 1.46496 * 109.47162 * 180.02562 * 11 10 9 13 13 C 1.34783 * 120.00248 * 179.97438 * 12 11 10 14 14 O 1.21573 * 119.99298 * 359.97438 * 13 12 11 15 15 N 1.34769 * 120.00159 * 180.27410 * 13 12 11 16 16 C 1.39396 * 120.00060 * 174.63856 * 15 13 12 17 17 C 1.38989 * 119.69480 * 185.07950 * 16 15 13 18 18 C 1.38498 * 119.08910 * 179.97438 * 17 16 15 19 19 Cl 1.73595 * 120.76318 * 179.97438 * 18 17 16 20 20 C 1.38987 * 118.46769 * 359.97438 * 18 17 16 21 21 C 1.38011 * 119.29441 * 359.97438 * 20 18 17 22 22 N 1.31966 * 120.86406 * 359.73148 * 21 20 18 23 23 H 0.97001 * 120.00480 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.46927 * 59.99846 * 9 7 2 25 25 H 1.09002 * 109.46688 * 300.00064 * 9 7 2 26 26 H 1.09004 * 109.47283 * 60.00106 * 10 9 7 27 27 H 1.08994 * 109.47545 * 299.99950 * 10 9 7 28 28 H 1.08995 * 109.47462 * 59.99938 * 11 10 9 29 29 H 1.09002 * 109.47145 * 299.99813 * 11 10 9 30 30 H 0.97001 * 120.00303 * 0.02562 * 12 11 10 31 31 H 0.97008 * 120.00014 * 354.64267 * 15 13 12 32 32 H 1.08000 * 120.45228 * 0.02562 * 17 16 15 33 33 H 1.08001 * 120.35362 * 179.97438 * 20 18 17 34 34 H 1.08007 * 119.56736 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1027 1.6965 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 6 1.4804 -4.9871 -0.0012 12 7 2.4325 -6.1005 -0.0018 13 6 1.9833 -7.3713 -0.0009 14 8 0.7880 -7.5934 0.0010 15 7 2.8591 -8.3956 0.0042 16 6 2.3982 -9.7062 0.1179 17 6 3.3098 -10.7495 0.2291 18 6 2.8380 -12.0467 0.3420 19 17 3.9378 -13.3825 0.4825 20 6 1.4637 -12.2544 0.3401 21 6 0.6171 -11.1704 0.2273 22 7 1.0961 -9.9448 0.1270 23 1 -0.4851 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6249 -2.5571 0.8897 26 1 2.8728 -3.6047 0.8877 27 1 2.8714 -3.6039 -0.8922 28 1 0.8528 -5.0448 -0.8904 29 1 0.8548 -5.0450 0.8895 30 1 3.3861 -5.9233 -0.0021 31 1 3.8103 -8.2208 -0.0714 32 1 4.3714 -10.5512 0.2282 33 1 1.0627 -13.2535 0.4261 34 1 -0.4516 -11.3267 0.2250 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286727972.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:25 Heat of formation + Delta-G solvation = 1.561891 kcal Electronic energy + Delta-G solvation = -18469.027249 eV Core-core repulsion = 15235.044833 eV Total energy + Delta-G solvation = -3233.982416 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.05345 -39.43951 -37.14719 -35.71907 -34.84045 -33.33980 -32.39758 -31.38720 -30.12199 -26.74143 -24.29952 -23.89257 -22.72241 -20.94485 -20.45990 -18.74525 -18.12535 -16.67092 -16.38003 -16.18246 -15.84319 -15.28386 -14.72415 -14.66626 -14.39852 -14.10475 -13.89801 -13.84265 -12.73663 -12.66172 -12.29141 -11.84537 -11.81273 -11.51308 -10.97906 -10.84864 -10.75753 -10.63859 -10.43346 -9.88030 -9.82795 -9.55617 -9.30382 -9.14707 -8.90417 -8.52687 -8.37781 -6.02456 -4.05825 0.71430 0.78341 1.48399 2.38586 3.10652 3.31346 3.36308 3.37957 3.62995 3.88287 4.31010 4.43740 4.53413 4.54913 4.75486 5.14803 5.24011 5.33138 5.57861 5.63110 5.77243 5.85354 6.14592 6.32797 6.42392 6.58537 6.61109 6.85756 6.98378 7.61324 7.62321 7.75000 7.95982 8.02450 8.36524 8.60338 9.00574 9.58283 11.08735 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.057366 B = 0.002281 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.975571 B =12273.241029 C =12726.592150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.120 4.120 11 C 0.135 3.865 12 N -0.736 5.736 13 C 0.688 3.312 14 O -0.527 6.527 15 N -0.671 5.671 16 C 0.402 3.598 17 C -0.210 4.210 18 C 0.037 3.963 19 Cl -0.054 7.054 20 C -0.207 4.207 21 C 0.153 3.847 22 N -0.469 5.469 23 H 0.262 0.738 24 H 0.020 0.980 25 H 0.020 0.980 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.394 0.606 31 H 0.414 0.586 32 H 0.145 0.855 33 H 0.145 0.855 34 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.502 -26.186 0.540 27.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.722 3.278 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.158 4.158 11 C 0.012 3.988 12 N -0.392 5.392 13 C 0.388 3.612 14 O -0.397 6.397 15 N -0.319 5.319 16 C 0.169 3.831 17 C -0.235 4.235 18 C 0.002 3.998 19 Cl -0.025 7.025 20 C -0.230 4.230 21 C -0.006 4.006 22 N -0.183 5.183 23 H 0.072 0.928 24 H 0.038 0.962 25 H 0.038 0.962 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.228 0.772 31 H 0.250 0.750 32 H 0.163 0.837 33 H 0.163 0.837 34 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 6.723 -25.496 0.493 26.372 hybrid contribution 2.168 0.302 0.044 2.189 sum 8.891 -25.194 0.537 26.722 Atomic orbital electron populations 1.69954 1.06049 1.26833 1.50380 1.25033 0.94868 0.99306 0.95273 0.86635 0.79551 0.83092 0.78566 1.20253 1.21271 1.20259 1.21156 0.92934 0.90936 1.51151 0.92707 1.19025 0.93841 0.90747 0.97748 1.21898 0.99830 0.93208 1.00892 1.21585 0.91204 0.83855 1.02174 1.45458 1.10729 1.04088 1.78886 1.16084 0.85434 0.80607 0.79123 1.91056 1.12883 1.82831 1.52941 1.42830 1.10720 1.03057 1.75285 1.18042 0.88996 0.84003 0.92081 1.21242 1.01096 0.90668 1.10496 1.20898 0.91181 0.88697 0.98993 1.98398 1.62870 1.45242 1.95953 1.22006 0.91596 1.02030 1.07335 1.22793 1.00677 0.85723 0.91438 1.67798 1.12485 1.23430 1.14603 0.92842 0.96202 0.96200 0.92705 0.92693 0.91669 0.91684 0.77234 0.74970 0.83679 0.83743 0.81382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.70 13.29 55.43 0.74 -25.97 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.52 -14.48 9.11 -34.44 -0.31 -14.79 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 9 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 10 C -0.12 -2.29 5.27 -26.73 -0.14 -2.43 16 11 C 0.13 2.32 5.67 -4.04 -0.02 2.30 16 12 N -0.74 -10.15 5.56 -65.23 -0.36 -10.52 16 13 C 0.69 10.39 8.52 -86.92 -0.74 9.65 16 14 O -0.53 -10.32 14.60 5.30 0.08 -10.24 16 15 N -0.67 -7.37 5.39 -15.82 -0.09 -7.45 16 16 C 0.40 4.72 7.42 -154.71 -1.15 3.57 16 17 C -0.21 -1.84 9.76 -39.21 -0.38 -2.23 16 18 C 0.04 0.32 6.37 -39.21 -0.25 0.07 16 19 Cl -0.05 -0.40 29.02 -51.86 -1.50 -1.90 16 20 C -0.21 -1.68 9.93 -39.39 -0.39 -2.07 16 21 C 0.15 1.53 11.17 -17.58 -0.20 1.33 16 22 N -0.47 -6.47 7.88 -12.38 -0.10 -6.57 16 23 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 24 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 27 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 28 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.39 4.10 8.49 -40.82 -0.35 3.75 16 31 H 0.41 2.77 8.72 -40.82 -0.36 2.41 16 32 H 0.15 0.89 8.06 -52.49 -0.42 0.46 16 33 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 34 H 0.17 1.25 8.06 -52.48 -0.42 0.83 16 LS Contribution 316.55 15.07 4.77 4.77 Total: -1.00 -34.50 316.55 -9.36 -43.86 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -4.05 Total: 0.29 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: -3.82 Total: -2.61 kcal Atomic # 7 Polarization: -50.70 SS G_CDS: 0.19 Total: -50.51 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.08 Total: -10.24 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -1.50 Total: -1.90 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -34.50 -9.36 -43.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286727972.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.421 kcal (2) G-P(sol) polarization free energy of solvation -34.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds